RNA id: XM_007228187.3


Basic Information

Item Value
RNA id XM_007228187.3
length 2094
RNA type mRNA
GC content 0.48
exon number 17
gene id LOC103031298
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 14801718 ~ 14812498 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCTGCACTGCCATCTCTCTCACTTCATCCGAGTGAATTTAGTGGGTGAGCAGACAGCTGGACTGAGCTTAGGACCACCGACCATCTCTGAACTGCCACAACCACCCTCACCATCATGGGGCTAACCAACGATCCCAACTACCGAAAACTGGAGCAATGGTACAAATCAAACGCTGGAGGTCTGAACATGAGGCAGATGTTCGACGGAGACAAGGACAGGTTCTCCAAATTCAGtttaaccCTCAATACAGATGATGGAGACCTACTTCTGGATTATTCAAAGAACCTCATCAATGAAGATGTGATGAAGATGCTGTTTGCCATGGCAAAGTCAATTGGAGTGGAAGAAGCCAGATCCCAGATGTTTGGTGGTGAGAAGATCAACTTTACTGAGGGCAGAGCTGTCCTCCATATTGCCCTGAGGAACCGATCTAACACTCCCATCATGGTGGATGGAAAAGATGTCATGCCTGAGGTGAACAGAGTTCTGAAGAAGATGAAAGACTTCTGTCATaGAGTGCGCAGTGGAGAGTGGAAAGGCTTCAATGGTAAGACCATCACTGATGTGGTCAACATTGGCATTGGAGGATCTGATTTGGGTCCTTTGATGGTGACAGAAGCACTAAAGCCATACTCCAAAGGTGGTCCTAACGTCTGGTTCGTCTCCAACATCGACGGGACACACATGGCTAAGACATTAGCCCAGCTGAATGCGGAAACCACTCTCTTCATCATTGCATCCAAGacattcaCTACCCAGGAGACAATTACTAATGCTGAGACCGCAAAGGAATGGTTCCTGCAGACAGCAAAGGATCCGTCTGCAGTGGCCAAGCATTTTGTGGCTCTTTCCACCAATGCGccCAAAGTGAGCGAATTTGGGATCGACACTGAGAACATGTTCGAGTTCTGGGATTGGGTTGGTGGGCGGTACTCGCTGTGGTCTGCTATTGGTTTGTCAATCGCTCTGCACGTAGGTTTCGATAACTTCGAGCAGCTTCTTGCTGGTGCCCACTGGATGGATAATCACTTCTGCTCAGCTCCACTGGAGCAGAACGCCCCTGTTCTGCTGGCTCTGCTGGGAATCTGGTATGTCAACTTCTTCCAGGCTGAGACTCATGCCTTGCTCCCCTACGACCAGTACATGCACCGCTTTGCAGCTTACTTCCAGCAGGGCGACATGGAGTCAAATGGAAAATATATCACCAAAAATGGCACGCGTGTGAACTACCACACTGGACCCATCGTATGGGGAGAACCAGGGACCAATGGACAGCATGCATTCTACCAGCTCATTCACCAAGGAACGCGTATGATTCCTGCTGACTTCCTCATTCCTGCACAGACTCAACATCCAATCAGAGATAATCTGCATCACAAGATACTGATGGCGAACTTCCTGGCTCAGACCGAGGCACTGATGAAGGGTAAGACTTCAGATGAGGCCAGAAAAGAGCTTGAGGCAGCTGGCAAGAGTGGAGAAGCTCTTGAGAAACTCCTTCCTCATAAAGTATTTGAAGGAAACAAGCCAAGCAACTCAATCATTTTCAAGAAACTCAGTCCTTTCATGCTGGGGGCACTGGTTGccATGTATGAGCACAAGATCTTTGTGCAAGGCGTAATGTGGAACATCAACAGCTATGACCAGTGGGGTGTGGAGCTGGGGAAACAGCTGGCTAAGAAGATTGAGCCTGAGCTGCAGGATGATTCTGAAGTCCATTCTCACGATTCTTCCACCAATGGGCTCATCAGCTTCTTCAAGAAAAACCGCGCTTGAATTACCTGATCCCTCTCCTTACTGCCTCACTTCTCTGATGGGAACAATGGATTACGTATTATGCCCCGACATAGTCCAGGCTTGGTAGGCCTAACTGAAGAGGAAGAGCACTTTACATATGTCACCATTTATTGTGTACTTGAGTGTCTTTGTGCATTGTGAGATTTGACTGTAAAAGTAGACCTAATAACCAGTAAGGGAATCCCCATTACTGTATGTGCTGCAAGTTCTGGAATGCTGTAACCCTTCTCAACACGTTTACCCTTTGCTTAGTCAACACTgactgaccaaaataaatgtCTAATTTGTCACCTAAAA

Function

GO:

id name namespace
GO:0006094 gluconeogenesis biological_process
GO:0006096 glycolytic process biological_process
GO:0004347 glucose-6-phosphate isomerase activity molecular_function

KEGG:

id description
K01810 GPI, pgi; glucose-6-phosphate isomerase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99198 lncRNA upstream 124924 14675873 ~ 14676794 (+) True G73566
TU99158 lncRNA upstream 154156 14646443 ~ 14647562 (+) True G73532
TU99150 lncRNA upstream 163165 14637947 ~ 14638553 (+) True G73527
TU99154 lncRNA upstream 182394 14614418 ~ 14619324 (+) True G73529
TU99136 lncRNA upstream 256205 14542198 ~ 14545513 (+) True G73514
TU99239 lncRNA downstream 31947 14844445 ~ 14844664 (+) True G73598
TU99411 lncRNA downstream 311374 15123872 ~ 15126987 (+) True G73710
XR_002650246.1 lncRNA downstream 373751 15186249 ~ 15187955 (+) True LOC111193097
TU99416 lncRNA downstream 376397 15188895 ~ 15189386 (+) True G73715
TU99417 lncRNA downstream 376397 15188895 ~ 15189386 (+) False G73715
XM_007228188.3 mRNA upstream 4485 14788767 ~ 14797233 (+) True LOC103031607
XM_007228189.3 mRNA upstream 4485 14788767 ~ 14797233 (+) False LOC103031607
XM_007228190.3 mRNA upstream 4485 14788767 ~ 14797233 (+) False LOC103031607
XM_022672174.1 mRNA upstream 4485 14788767 ~ 14797233 (+) False LOC103031607
XM_022672173.1 mRNA upstream 4485 14788767 ~ 14797233 (+) False LOC103031607
XM_007228193.3 mRNA downstream 2306 14814804 ~ 14823334 (+) True hsd17b2
XM_007228198.3 mRNA downstream 79036 14891534 ~ 14910972 (+) True rpgrip1l
XM_007228199.3 mRNA downstream 79036 14891534 ~ 14910972 (+) False rpgrip1l
XM_022672178.1 mRNA downstream 79395 14891893 ~ 14910972 (+) False rpgrip1l
XM_007228203.3 mRNA downstream 262961 15075459 ~ 15081023 (+) True irx5
TU99159 other upstream 152167 14648829 ~ 14649551 (+) True G73533
XR_002650241.1 other upstream 1903787 12871484 ~ 12897931 (+) False LOC103043719
trnar-ucg_4 other upstream 2198294 12603352 ~ 12603424 (+) True trnar-ucg_4
TU97933 other upstream 4719578 10078579 ~ 10082140 (+) True G72621
TU97487 other upstream 5652299 9142899 ~ 9149419 (+) True G72281
XR_002650242.1 other downstream 79036 14891534 ~ 14921003 (+) False rpgrip1l
TU99974 other downstream 1474178 16286676 ~ 16288329 (+) True G74169
TU100573 other downstream 3642353 18454851 ~ 18455197 (+) True G74649
TU100801 other downstream 4270318 19082816 ~ 19085556 (+) True G74832
TU101007 other downstream 4715493 19527991 ~ 19533073 (+) False LOC103044129

Expression Profile