RNA id: XM_007228189.3


Basic Information

Item Value
RNA id XM_007228189.3
length 2980
RNA type mRNA
GC content 0.46
exon number 9
gene id LOC103031607
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 14788767 ~ 14797233 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gctgctgctgctggcggGGATTAGGAGCTAAAACGGTTTGCCCTCGTGACGCCACTTCCCTGAGCTGGGCTGAAAATGAAGGCGGCCATGTTCTAGCTAGTGGAGAAGCGGGGCAGTGACTGTGTGAAAATCCTTCTTATTTAATGAAGTGAACCAGCTCTGCTGCTGAGCCTTGTCTGACACCCGAACCGGACCGGACGGGGTCTAGGGACGGAGATCTGTTCACTTTAGCTGTAATCTCGCCGACCTCTGGGCCAGAATGAGCGGAGGGACCCCGTACATCGGGAGCAAAATCAGCCTGATCTCCAAGGCCGAGATCCGCTATGAGGGCATCCTCTACACCATCGACACAGAGAACTCCACGGTCGCCCTGGCTAAGGTGCGCTCCTTTGGAACCGAGGATCGCCCCACAGACAGACCTATACTGCCTAGGGATGAGACCTATGAGTACATCATCTTCAGAGGCAGTGACATAAAAGATCTGACAGTTTGTGAACCTCCCAAACCAACTTTGCCTCAGGACCCAGCCATTGTTCAGTCATCTATGGGATCTTCTTCCGCTCCATCTTCTTTCCATTCTGGAAACTCGTACGGGCTGTTTAAAAGGGCTCCAGTCTCCCCATATAGCCAGTTCACTGCCAGCCCATTGGTTTCACCCCCATTTGGTGCTGTTGGAGCTCGCAGCAGTCCTCCACTGGAGTCCTTGCCGAAGAGCCCCCCGCTGGAATCTGCTGCACCATCAGCCGCTTCTGTCAGCTCCACTGCACCTGCACTGGTTGGCCGAAGGAGCCCCATTGCAGCACGCCTCACTGCACCTGGTAGCCAGAAGCCCCTGGACATCCCAGAGCAGAGGAGGGGTGAGGGCCAGCCTAGGCTATGGTCAGGACTCAGGCATGCTGCAGGAAATGAGGCTAGTGTAGTTCGCTCAAGCTATCATTCAGCAGGCACTGATGCGCCAAAAGTGGCCCCCCGACAAGAGTCTGATCAGTCCAGAGCTGAAAACAAGGATGCCTCTAAGCGGCAAGCAGCTACAGGCCCTCCAGCTCCCCGTCGTGGTCGTGGAGGAGGACATCGTGGGAGAGGGCGTTTCCCTGTGAGGAGAGACGGACCAATGAAGTTTGAGAAAGATTTTGACTTTGAAAGCGCTAATGCCCAGTTTAACAAGGAGGAGATTGACAAGGAATTTCAGAGCAAACTGAAGTTGAAGGATGAAAAGACTGAGAAAGCTGTAAACGGGGAAGATAAAGGTGACTCTGGGGTGGATACTCAGAATAGTGAAGGCAATGCTGAAGAGGAGGATCCACTAGGCCCCAACTGCTATTATGACAAGTCCAAGTCGTTCTTTGACAACATCTCCTGTGACGACATTAGGGAGAGGAGGCAGACCTGGGCAGAGGAAAGGCGGATGAATGCTGAGACGTTTGGGCTCCCGCTACGTCATGGTAGAGGGCGCGGAGGGTACAGAGGTCGTGGAGGCATGGGCTTCCGCAACAACCGCGGTCGTGGAGCTGGACGGGGGTCGTTTGGCGGCTCGCACATGGGTGGTGGCGGCTACAGAGGCGGGTTCAGAGGAGGACAAGGAGGAAGGGAGTTCTCAGATTTTGAATACAGGGACAACAAAGTAGCTGCATAGTGCAAATGGGAGCTGGGTCCACCAGAAGATTGAACTACGTTTTTGGTCACTACTTTTGACAACAGGAATGAATAAAAATTTGTAGATGTATATTTGTCACCAGCACTGgtatagaccacttaaaaggtGGATGTAAATGCAAGTTTTTCCATGTCTTCTTAAGAATTGGAAATGTTTCTGCCTTTTGAAATGTTAATCTGACAAGAATAGTTCCAGATGGTTGAATTTGAGTATATGCATGTTTCAGAGGGACGTaaggttttctttttgtttatttgtttatttttgggtttttcaCTACTAAACTTGTAATAGCTGTATAGTAAAAGTGTACATATGCCCACATACTGTGAGTACTTTGATCACTGAAATagctttatattattattattattgttattattattattattattattattattattatttttattattagtctaAATATAAGTTCCCACTTTAGCACCAAAATAGCCAGTTTGGGTCTCAGTTAcagctttttactgtatttttctactTACTCACAATATTCTCCCAGGTTAGGTAGTCAGTGTCATTACACTTCACCTGTGCGATCAGCTTGCATGTTGTTGGATTTCGGTGAGAGgggtttatttttgttggaTATCTTTTCAAAAGTCCGTGTGTGAGATTCATAGTTTAACAAAAACATTCATCATCTGTGTGAGCTGGTAGACATGGGCAACAGAACTCAACTCTGTTGAATAGGCATTTCTTATTGTAAAACATCAAAGTGTTCCTTTCCTTAATTATTTGCTTTGCCTCTGGAAAAAGCGCAGtctcaaacataaatataaaatatagtgaatATACTCTTGCTGCCCACTGCACTAGGCATACATGTGTTGTGACTTTGTTTGATggactgtgtttattttaattacagtcaGTTTTAAGCTGTAACCCATGCATTTTTGACACCACTGTTTGTAAGTTAGATGACTGATGGTAGCATGTCTAAAGTGATGTTTGGCCGTAATTTtacaggaacagaaaaaaacttttttaattcttgttgattttgattttggatTTTGAAGATACCTGTTTTTTGCATGATTGGGACAGTATATATTTAGAAACAGTTTTATAAATGTTCACATTTGGCTCAGAGTGGCTTAGGAGACTAAGACGCTGACAGAGTTGCCCAGAATCATGAGGTCAAATTCCAGGTCAGTGCTGTGTTGCCTTTAGCAGccagagagcaaaattggccatgttcctctggggtgggtagatggcgctctctccccacatcactcctctGTTACTGTTACTTCTATTTAtctgaataattaaataaataaataacataaatacaaA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99198 lncRNA upstream 111973 14675873 ~ 14676794 (+) True G73566
TU99158 lncRNA upstream 141205 14646443 ~ 14647562 (+) True G73532
TU99150 lncRNA upstream 150214 14637947 ~ 14638553 (+) True G73527
TU99154 lncRNA upstream 169443 14614418 ~ 14619324 (+) True G73529
TU99136 lncRNA upstream 243254 14542198 ~ 14545513 (+) True G73514
TU99239 lncRNA downstream 47212 14844445 ~ 14844664 (+) True G73598
TU99411 lncRNA downstream 326639 15123872 ~ 15126987 (+) True G73710
XR_002650246.1 lncRNA downstream 389016 15186249 ~ 15187955 (+) True LOC111193097
TU99416 lncRNA downstream 391662 15188895 ~ 15189386 (+) True G73715
TU99417 lncRNA downstream 391662 15188895 ~ 15189386 (+) False G73715
XM_007228191.3 mRNA upstream 1859 14776711 ~ 14786908 (+) True amfr
XM_007228183.3 mRNA upstream 13563 14757323 ~ 14775204 (+) True LOC103030248
XM_007228184.3 mRNA upstream 13563 14757323 ~ 14775204 (+) False LOC103030248
XM_007228185.3 mRNA upstream 34237 14745268 ~ 14754530 (+) True dus2
XM_007228173.3 mRNA upstream 151694 14627214 ~ 14637073 (+) True LOC103027493
XM_007228187.3 mRNA downstream 4485 14801718 ~ 14812498 (+) True LOC103031298
XM_007228193.3 mRNA downstream 17571 14814804 ~ 14823334 (+) True hsd17b2
XM_007228198.3 mRNA downstream 94301 14891534 ~ 14910972 (+) True rpgrip1l
XM_007228199.3 mRNA downstream 94301 14891534 ~ 14910972 (+) False rpgrip1l
XM_022672178.1 mRNA downstream 94660 14891893 ~ 14910972 (+) False rpgrip1l
TU99159 other upstream 139216 14648829 ~ 14649551 (+) True G73533
XR_002650241.1 other upstream 1890836 12871484 ~ 12897931 (+) False LOC103043719
trnar-ucg_4 other upstream 2185343 12603352 ~ 12603424 (+) True trnar-ucg_4
TU97933 other upstream 4706627 10078579 ~ 10082140 (+) True G72621
TU97487 other upstream 5639348 9142899 ~ 9149419 (+) True G72281
XR_002650242.1 other downstream 94301 14891534 ~ 14921003 (+) False rpgrip1l
TU99974 other downstream 1489443 16286676 ~ 16288329 (+) True G74169
TU100573 other downstream 3657618 18454851 ~ 18455197 (+) True G74649
TU100801 other downstream 4285583 19082816 ~ 19085556 (+) True G74832
TU101007 other downstream 4730758 19527991 ~ 19533073 (+) False LOC103044129

Expression Profile