RNA id: XM_007228193.3


Basic Information

Item Value
RNA id XM_007228193.3
length 1453
RNA type mRNA
GC content 0.45
exon number 6
gene id hsd17b2
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 14814804 ~ 14823334 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCATTCATTTGCCTGACTTTGGCTTTTTTGAGTTGTACtagataaacaaaaacaattcagttatttctttttttatttgtgtttagctCCAGGTAGGTTTACCTGAGGTGGCCCACTTCATTTTAGAAGAAGCAGACATtggaaaaaagagataaaagttaaaagTGTTCTGCAGAGAATGGAGGCAGGTGGAGGGGAAGCATGGCTGTGTCCGCTGTGTGTGCTGGTAATAGCCACCAATACCTTACTGCTCTTGCTGTGGGGTAGAGGAGGGAGCTGGGTGGCATGGTCAGTGGCATTGCTCGGGCTCACACTGTGCTGTATGGCCCCAGCTGGATGCCTGGTGTTGGCTTTGCTGAGTGTGTGCTACACTGTCTTTTACTTCACTTCAAGGAGAGAGGAGCATCTGCTGCCTGCACATAACAAATCAGTGCTGATTACAGGTTGTGATTCAGGGTTTGGCCACAGTCTTGCTAAGATTCTGGACAGTGCTGGAATAAAGGTATATGCTGGGGTGCTGAAGGAAAGTGGACCAGGAGCACAGGAGCTCAGGAGACTTTCATCTTCACAACTTACTGTCCTCCAACTGGACGTCACAGACACCAGCCAGATCTCTGCTGCCCTGCAGTTAATAAAGAGCCAGACAGGAGAGAGAGGTCTTTGGGGATTGGTAAACAATGCTGGAGTGATTGGATACCTGTGTGATGGGGAAATTCTTCCAATCAGAATACTTAGAAAAACCCTGGATGTCAATTTCATTGCCGGTGTGGAGATGACACAGACATTCCTGCCTTTGATACGACAATCTAAAGGGAGGATTGTGAACATATCCAGTCTGGCAGGGGAAGTTCCTTTTCCTGGTTTTGCTGCTTATGGATCATCTAAAGCAGCTGTGATTTCCTACTCCGGAGCTCTGAGACAAGAACTGTCCCAGTGGGGAGTGAGAGTGGCTGTTATTCAGCCTGGGGGTTTCAAGACTAACATTCTGGGCAATCAACAGGAATGGATTCAAGTTCAGAAGGAGATCCTTAGCAGTCTGCCCCAAGAAGTAAGAGAGGCATATGGGGACGAGTACATTTGCTCCCTGCAACAGCGTTTAAGCTCTATGAATACACAGGGCAGCACTGATGTTGGGCCCGTTGTGGAAGCTATAAAGCATGCACTGCTCTCAGAAACACCCAGAGCCTTCTATCATCCAGGACCAGCTGCCTGGTCTGTTCCATTCATCCACAGGTTCTGCCCAACCTGGCTATTTGATATcattttttcaaacatttttaagtattacagTGTTCCACCAGCTGGAGTGGCTTCTAAAAAATGAACAACACACAGCTTGAGCATACTGTTAAACTTTATCATGTGACctcattcattttaaagcaaTACACAAATGTTGTACAATATGAACAAAACTGTTCAAATATATGCACTTATACCACATAAATAATAA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0004303 estradiol 17-beta-dehydrogenase activity molecular_function
GO:0047035 testosterone dehydrogenase (NAD+) activity molecular_function

KEGG:

id description
K13368 HSD17B2; 17beta-estradiol 17-dehydrogenase / 3alpha(17beta)-hydroxysteroid dehydrogenase (NAD+)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99198 lncRNA upstream 138010 14675873 ~ 14676794 (+) True G73566
TU99158 lncRNA upstream 167242 14646443 ~ 14647562 (+) True G73532
TU99150 lncRNA upstream 176251 14637947 ~ 14638553 (+) True G73527
TU99154 lncRNA upstream 195480 14614418 ~ 14619324 (+) True G73529
TU99136 lncRNA upstream 269291 14542198 ~ 14545513 (+) True G73514
TU99239 lncRNA downstream 21111 14844445 ~ 14844664 (+) True G73598
TU99411 lncRNA downstream 300538 15123872 ~ 15126987 (+) True G73710
XR_002650246.1 lncRNA downstream 362915 15186249 ~ 15187955 (+) True LOC111193097
TU99416 lncRNA downstream 365561 15188895 ~ 15189386 (+) True G73715
TU99417 lncRNA downstream 365561 15188895 ~ 15189386 (+) False G73715
XM_007228187.3 mRNA upstream 2306 14801718 ~ 14812498 (+) True LOC103031298
XM_007228189.3 mRNA upstream 17571 14788767 ~ 14797233 (+) False LOC103031607
XM_007228198.3 mRNA downstream 68200 14891534 ~ 14910972 (+) True rpgrip1l
XM_007228199.3 mRNA downstream 68200 14891534 ~ 14910972 (+) False rpgrip1l
XM_022672178.1 mRNA downstream 68559 14891893 ~ 14910972 (+) False rpgrip1l
XM_007228203.3 mRNA downstream 252125 15075459 ~ 15081023 (+) True irx5
XM_022672185.1 mRNA downstream 485195 15308529 ~ 15351344 (+) True lrrk2
TU99159 other upstream 165253 14648829 ~ 14649551 (+) True G73533
XR_002650241.1 other upstream 1916873 12871484 ~ 12897931 (+) False LOC103043719
trnar-ucg_4 other upstream 2211380 12603352 ~ 12603424 (+) True trnar-ucg_4
TU97933 other upstream 4732664 10078579 ~ 10082140 (+) True G72621
TU97487 other upstream 5665385 9142899 ~ 9149419 (+) True G72281
XR_002650242.1 other downstream 68200 14891534 ~ 14921003 (+) False rpgrip1l
TU99974 other downstream 1463342 16286676 ~ 16288329 (+) True G74169
TU100573 other downstream 3631517 18454851 ~ 18455197 (+) True G74649
TU100801 other downstream 4259482 19082816 ~ 19085556 (+) True G74832
TU101007 other downstream 4704657 19527991 ~ 19533073 (+) False LOC103044129

Expression Profile