RNA id: XM_007228196.3


Basic Information

Item Value
RNA id XM_007228196.3
length 4680
RNA type mRNA
GC content 0.47
exon number 22
gene id rbl2
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 14868932 ~ 14889755 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCAGTcaaaggccatttaaatggctGCACTGTGCAGAATCGTACACTGTGCCGTACAGCAACGCAATAACTCGCCTTGGGTTTAATTTAAACGGCTTAAATGCTGTTTTTCGGAAGCCTGTATTGCGTTTGGTCCTGTTTTCCCTCCGTACGTAGTCAGAAAGGACTGCGGCGAGTGTAGGTCGTGTAGTTTGATCTAGATACAGTTGCGTGAAAATGAACGAGGAGGAAGACGCGCTGCAGAAAACAAGGCAGGGGTTTGAGGATCTCTGTCGAGCCCTGAATATGGACGAGGAGGCGAGTAACGGGGCATGGAGGAGCTACGAGAACATCAGCAAAAATTACACCTTAGAGgGTAGTGAATTACACTGGCTGGCGTGTGCCCTGTATGTGGCCTGCAGGACGTCTGTACCCACTGTTAGTAAAGGCACAGCTGAAGGGAACTATGTCTCTCTTACACGGATTCTGCGCTCCTCAGAACAGAGCTTAATAGagttttttagtaaaatgaagaAATGGCAGGATATGGCCAACTTGCCAAGGGAATTCCGGCAGAGCACCGATAAACTGGAGAGGAACTTCACTGTAACAGCTGTCATTTTCAAGAAATATGTCCCCATTTTTAAAGACATATTTAAAACCCCCTCTGAGGAACCGGCTCGAGCGCACAGAAGCAGGAAACAGAGGCGGCATCCCTGCACTGTGGCGGAAGTGTTCCACTTCTGCTGGGTCCTGTTTGTGCATGCAAAAGGAAATTTTCCCATGATCAGTGACGACCTTGTGAACTCCTATCACCTGTTACTGTGTGCACTTGACCTGGTCTATTCCAACTCTCTGTTATGCTCCAATCGTAAAGATCTGCTGAACCCTTCCTTCAGAGGTCTTCCAGAAGATTTTAGCAGTAAAGACTACAAGCCGAGTGGTCCCGTCTGCTTCATAGAGCAACTGTGTGAACTGCATGATGGTCTGGTACTGGAGGCCAAAGGAGTGAAGGAGCACTTCTGGAAGCCCTTCATTAAGAGACTGTTTGAACGCAAGATTTTAAAGGGGAAAGAAGAGATACTGACAGGATTTTTGGATCCTGTTAATTTTGGAGACAGTCTGACGTCTCTGAATCGAGTGTATGAAGAGCACATTCTGTCATCAGGAGCTCTGGATGAGAGAATATTCCTCGGAGAAGGAGCAAAAGAGGACATCGGCACCCCCGGACCGTGCCTGTGTGAGGGAATCGAAAACCAGGAGCACCCTGCTAGCATTCTTTACAACTCTTTAACTTCGTCTGCTCTGAAAGTGTCCACTCCACTGACGGGCAGGACATACGTGCAGGAGAGCAGTGCTGGCACACCTGTTTCCATGGCAATGCAGGGCGTAGGGCGTCTGCATAGCCTCTTGGCAGGACTGAAGCACAGACCGAGCCTGAGACTGAGAGAGATACTGAAGGCCTGTGCGAGGGACCCCACAGAGGGCATTGCTGGCAGACTGAGGGAGATGTCTGAAGCTTTTCTCCAGAACtatgaaacaaaacaagagGAGAATGAAGTTCTGGCTAGAGATATTGCTGCAAAATACTTTAGGCTTGCTGAGGCACTCTACTATAAGGCGCTGGAGGGAATCATTGATCATGAGAAGCGAAGACTTGGTGACAGCGACCTTTCTtcTATTCTAGAGCAGGACATGTTACACCGTTCTCTAATAGCCTGTTGCTTGGAGATTGTGATCTTTTCCTACCGTCCACCCGGCGAGTTTCAGCGGGTGCTGCAAGTCTTTGAAATACCTCCCTACCACTTTTATAAGGTAATCGAGGTGTTGGTTCGAGCAGAGGAGGGTCTGTTCCGGGAGGCAGTGAAGCATCTGAACCATGTGGAAGAACAGGTGCTGGAGAGCCTGGCCTGGAAAGAGACTTCCCCTCTCTGGGACAGCATCAAAGGGGCCAAGAACCACGTGCCTTCCTGCCAGGAGGTAATGCCCCCTCAGTATTTGGAGGATGGATCTGGCAGCAGCCCTCAGAGTCCCAAAAATAAAGAGTCCAGTGCTAACACTGCAGGTGCAGGAAAAGGTGTACTCCCCTCATCTTCTACTCTCCAGGAGCGCTACAGCTCTCCACCCACCGGTACGGCACGCAGACGCCTCTTTGTGGACTCGGACCCCACCCCTGACCCCGCAGTGTCCAGCAGGGTCACCCAGCCCTCCCTAGTCAGCACTATACCTGCGGGCCAGACTGTAGTTACTATGGCAACAGCTACTGTTACCGCAAACAATGGTCAGACGGTCACCATACCTGTGCAAGGTATAGCCAATGAGAACGGAGGCATTACATTCATCCCGGTGCAGGTAAGTGTGACAGGACAGAGTGGGGCGGGGCTGCAGCCTCTCACTGCCCAGGCTCTGACCGGCACACTGAACTCCCAGCAGCTGACACCCACTACACCCACCAGCACTGCCCACAGCAGCCCTGCatcaggaaaacaaaacaagaaaagtcCTGCTCAAGTAACACCTCCAAACAGAGCCCAAAGAACAGGTTCCCTCAGTCTGTTCTTCCGCAAGGTGTATCACTTGGCCAGTGTGCGTCTTCGTGACCTGTGTGTAAAGCTAGACATTAGCACAGAACTGCGACAAAAAATCTGGACATGCTTTGAGTACTCACTGGTACACTGCACTGAGCTGATGATTGATCGGCACCTTGATCAGCTGCTAATGTGTGCCATCTACGTCATGACTAAGGTGACCAAAGAGGACAAATCCTTCCAGAATATTATGAAGTGCTACAGATCTCAGCCTCAGGCCAGCAGTAGTgtttacagAAGTGTGCTGATATCAAGACGAAAGAGAAGACAATCAGGCAATAATGAAAACAGCAACAGACAAACCTCTCCATCTGAAGGAGGACATGAACAGgCAACAGGAAGTGGTGGTAGTAGTCCCATGCGCTCCAGCAGCACTCTGCCTATTCCCCAGCCCAGCAGTACCCCCTCCACGCCAACCCATGCCCCAGGAGCCCCAccagagcaggaggaggaggagcgggGTGACCTGATCCGCTTCTACAACCATGTCTACATTAAACAGATCAAACCGTTCGCCCTGCGCTACTCATCCAGCTCGCCAAAAGCTGAGGCTGAGACTCCGCCTTTGTGTCCGTATCCCTTGCTCCGCATTGGCTCTCCACGCAGAGTTCTCCTGTCACACAACCACTCCATCTACATCTCTCCACACAAGAGCGGCAGCCCCCTCACGCCCAAGGACAAGATCTTCTACTACATCAGCTCCAGTCCCTCCAATCGATTGAGGGAGATTAACAGCATGATCCGCACTGGAGAGACGCCCACAAAGAAGCGCAGTATGGCTCTGGAGGAGGAGCAGCAATCTCCTGCTAAGAGGCTCTGCCAAGAGAACCAGAACGCTCTCCTGCGCCGCCTTCAGGACGTGGCCAATGATCGCAACTCCTCCCACTGACATAGAAAGTGCTGCAAGATCCAAACTCCAAATCTAACGTCCTATAAAAATATAGGAACATCCACAAACTAGTGACTACAGTATCACACTGAAACAGAAAAATGCACAAAGAGGCTCTGACCACTTACCACAGACCACCGGCTTCCACAAAACACCCACAGGAGATAAAGGATAAACATTTTGCTTACAAATGCTTGCAAATGCAGCCACTTCATATCTCTTCCATTTTGATGCATTTGGTACATTTTGAATTGCATTTTCtcaaagaagaaataaaaataagcttaGAGTTAGCAAAGTTTATATATTGTCagtgtcatgcaaaaacctcgtcatgcatctccaaaatagcaacttttcaataataaggaaaaaaatacttcctgcaagtcaatgtaaagattttttacTTCAGGTAATGTTTGAGCATTTCTGTTTCTTCCACTGTTAAAATTCAATCATGAAACAACAGATAAAGAACAATTGCCAAATTCAAATTATGCAGAAAAGTGCAAAATGGAATggaaatacaaggtttttgcatgacagcaatgctttacttttactcagtacatactgtaaaacattttaggaAGACTTTTGAAGAAGATAAAGCACTTAACACAGCATTCGCCAGCAGATCTTTCAAAGCGTCGACATTGTTCTTGCTTTTTTAAGAAGTATTTTCTTAAAAGATTGTTTATCATTTTTAGTGACCAGagttcagttttcttatgaTACCGTTAAGAAAAAGATAGTGAACTCTTTTATATGccgcagtgtgtttgtgttacttgtgcgtgtgtgtgggttATATAGCTAATATATTTATGCTATTTTTTCTAACATTTAGAGAGATATCAACTAGGCAAAACCAGCACCTAATAATAAGTATCATGTTTATAGTATAAGCTGTATTTCACCTTTAaagcaatatttatttatgtcccCTTGTGTTGTGCACACGTTCTACAGCTGTGCaagacattttttctttttcttgcaaGCATTTTTTCTTCTACTTTTTTCCTTCTGGAAAATGTATTTGTTCTCTTGTCATTTCTGGAATATGATGTCAAAACAAACCCTGTCTGTTCATGATGTTGAAAGAAGCACCTTTTATTGTAAAAGTGCCTTTTTTCCATTGACCTCTACTGAGCTTTGTATGTGTGCTTAACATAGAGTTTCCCTACATGGCATTTAATAAACAACAGAACACTTGTAA

Function

GO: NA

KEGG:

id description
K16332 RBL2; retinoblastoma-like protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99309 lncRNA downstream 48456 14820230 ~ 14820476 (-) True G73644
TU99308 lncRNA downstream 49169 14819476 ~ 14819763 (-) True G73643
TU99307 lncRNA downstream 50120 14818502 ~ 14818812 (-) True G73642
TU99301 lncRNA downstream 63430 14804231 ~ 14805502 (-) True G73639
TU99250 lncRNA downstream 68299 14797355 ~ 14800633 (-) True G73605
TU99350 lncRNA upstream 1717 14891472 ~ 14893864 (-) True G73671
TU99357 lncRNA upstream 10913 14900668 ~ 14901465 (-) False G73674
TU99358 lncRNA upstream 10913 14900668 ~ 14902293 (-) True G73674
TU99359 lncRNA upstream 12633 14902388 ~ 14904820 (-) True G73675
TU99364 lncRNA upstream 19352 14909107 ~ 14910680 (-) True G73679
XM_022672176.1 mRNA downstream 11336 14849582 ~ 14857596 (-) False LOC103033621
XM_007228195.3 mRNA downstream 11337 14849582 ~ 14857595 (-) True LOC103033621
XM_007228194.3 mRNA downstream 37455 14827404 ~ 14831477 (-) True snx20
XM_007228192.3 mRNA downstream 42043 14823218 ~ 14826889 (-) True mphosph6
XM_007228182.3 mRNA downstream 135679 14718554 ~ 14733253 (-) True prkar2b
XM_007228201.3 mRNA upstream 74743 14964498 ~ 14967301 (-) True irx3
XM_022672180.1 mRNA upstream 111420 15001175 ~ 15074769 (-) False LOC103035545
XM_022672179.1 mRNA upstream 111420 15001175 ~ 15074769 (-) True LOC103035545
XM_022672181.1 mRNA upstream 234059 15123814 ~ 15214284 (-) False LOC103037068
XM_007228204.3 mRNA upstream 234059 15123814 ~ 15213323 (-) True LOC103037068
TU99163 other downstream 323494 14542209 ~ 14545438 (-) False LOC103025073
TU98709 other downstream 2247576 12610834 ~ 12621356 (-) True G73172
TU98667 other downstream 2303966 12564348 ~ 12564966 (-) False fbxo31
TU98668 other downstream 2304058 12564348 ~ 12564874 (-) False fbxo31
TU98666 other downstream 2304134 12564348 ~ 12564798 (-) False fbxo31
XR_002650248.1 other upstream 872009 15761764 ~ 15778423 (-) False LOC103046265
TU100463 other upstream 2987271 17877026 ~ 17883786 (-) False nrg4
TU100498 other upstream 3092992 17982747 ~ 18029747 (-) True G74591
TU100745 other upstream 4049419 18939174 ~ 18940464 (-) True G74791
TU100809 other upstream 4181183 19070938 ~ 19072888 (-) True G74838

Expression Profile