RNA id: XM_007228199.3


Basic Information

Item Value
RNA id XM_007228199.3
length 5237
RNA type mRNA
GC content 0.46
exon number 26
gene id rpgrip1l
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 14891534 ~ 14921003 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGACTTGTCTGGACAGACTCCCCGTAAACCTGCTggaactacatttcccagaatgGTTTTCGGGAAGTCGTCCAGTAGCTGGGGAAGCTGCGAGTTGTTTGCTAGCAACGGTCGCTGCGGCTCCCGATAATGTAGCACGCTAAGCTAGCTCAAAATCTGGCGAACTgagaaagtatatttacagattgAAGCATGTCGGCGATCTCGTTACTTGACGAGAGTCCTGAGGAAGTTCCTGTGAGAGACCAACCTTTAAACCCCAGTGGAGCAGGCATGCTAGAATCCCATAATGCCCGAGCCAGACAAGCTGTGGCCAAGGTCAGCAGAGAGGAGCTTGAAGACCGCTATCTCCGTTTGCAGGATGAAAACCTCCTGCTCAAacaacacacgcacaaacaagAGGACAAGATCAAGAGAATGGCCACCAAGCTGATCCGCTTGGTAAAGGACCGTAAGAGGGTAGAGCAGATGACTTCAGCAGGTCGTGCGGTAGGTGGTCGGGATGTTGAGATGGAAGAAATGATGGAGGAGCTCCAAGAGAAGGTCCAGGAACTGGAGAAGCAAAATGAGGGGCTCAAGCAACGTCTGCTCATAGCAAAACATCAACTTCAGACCCAGAGTCACAGACCAACGCCCTATAGTCACGTTCAATCTCGCATTAATTCCGGCCTCCGCAGACTTAGGCAAGACACACCTCCGCTGTCTCAGCGGCCTCTTACTCCAAGAGGAGGATCCAGACATGTGGAGGGGGAAATCAGCAGCAAGCCACCACAGGGCCATTTGCCCCGTTACGGACACAGTCTGTTGGATGAGGCTCGCTCAGAGATCCGCAATTTGGAGAATGTGATCGAAAGCCAGAGGGCTCAGAtagaagagatggagagatcaGCGGAGATGTTGAGAGACCAGTTgaggagtaaagagagagaatatgaggaGTCTCTTCACCACATTAAAGAACAGCAGGCCAGTGGTCAAAGGTCAACCATTAAAGAAAATGTGGAGATGATAAAGCTGCAGAAGCAACTGACTGAGAAAGGAAACGCATTCATTGTGCTGGAGGGAAGATTCCTTCAACTACAAGAGAGCCAGAAAACTATGAAAGCCAGCCATGATGCAGCAATGGCTAAAGTGGATGAGCTCACTGGGCAGCTAAAAGAAGAGAGGCTGAAAAGTGTGGGCCTAGAAAGCCAACTGCACATTAAAACACTGGAAGAAAGGAGGACTGGTGAGTTACTTATGCGAATTCAAGATttggagaaggagagagacttGCTCAAAGAGAACTGTGATAAGTTAATCAGCAGTGCATTTGATGTTAGCCAGGAACAGAAGTGGAAGACGAAAGAACAGCAGCTCAAACTGCAGATTGCTCAGTTAGAAATGGCACTGAAATCTGATCTCACTGATAAAAACCAAATCTTGGACAAGATTAAGGCAGAGAGAGATTTGAATGAGAACTTGATGCAAGAAAACAAAGAACTTCAACTTCAGTTTTTggaacaaaagcaaaaattagaagaaataaaaaatcgCATGAAGTTCTTCACTAAGGAGAGTGAAATAGATGCTGCTGAACTCAGTGAAGCACTGATGCtcataaagGTGCGCAGGACCCAAGCGAATGGTGAGTTGGGTTTTCTAGGAAAGATTGATGAGAAGATCCATGTTGATGTGGAAAGCTCACTGAAAGAACTACAGGCCACTCATGCTGAAACCGTGCAAGAGCTGGAGAAGACTAGAAATATGCTCATCATACAGCACAAGATCAATAAAGACTACCAGGCTGAAGTTGAAGCAGTCACACGCAAGATGGACGACCTGAAGCTGGAGAATGAACTTAAACAAGAGAAGCTGGCCCAGCTTCTGGACATGAGAGCTGCCAAGATAAAGAAACTTGAAGCCCAGTTGAAAGACATTGCCTACGGAACCAAGACCCACGTCTTCAGACCTGACGTCACAGAAGATGATGTGGCTGATGAGTTTGATGAAACTGTGCACCTGGCTAGAGGCGAGAATCTTCTGGAGGTTCACTTGGGCACAGCTCTGTTTAGTCCTGAAGCTTTGGAGAGTCTTGGTGACAAAGACCCGTCAACCTTCTGCACTTATGCATTTTATGACTTTGAACTTCAGTCCACGGCAGTAGTGTGGGGGTCCCAGCCAACCTATAACTTCACCTCGCAGTATTTAGTGAAAGTGGATGATCTTTTCTTGCACTACCTTCATAGCAGCTCTGTTACTGTGGAAGTGCAGTTGGCTGAGGGTCTGGCGTACCGCACAATAGCTGCTGGTCAGCTGCGACCAAGTCAGGTCttggaaagagagggaaaggtgTTCGGCACCCTGCAGTTGGTTGGTGTTAGTGGGGAGATCCAGGCATTTGGCACGCTGGACTACTGGCTCAGACTGAGAGTTCCAATTGAGCAGGCCATCCGACTGTATAAGGAACGAGCCAAAGCACTGGGCTATCTCAGTTCCAGCCTTCGAGACCAGAGCCAGGCTTCAACATCATCAGTCCCGAGCACTTCGTTCAAAAAAGATGATAGCCTAAATGAACTCCATGTCACGGTACGCTGCTGCAGTATCCTCAGATCTAGAGGCCCTCATTCCCAGCCCAGCCCGTACGTCATCTACAAACTGTACGACTTCCCTGACCACGACACGCCAATCATTCCTTCTACCTGTGAGCCACAATTTGAAGACCATGTGACCTTTCCTGTGGCGATGAATGCTGATCTGGATGCGTATCTGAGGGCAGAAGCTCTGATCCTGTATGTGTTTGATGATCTGGACTTGGAGAATCAGTTATACCTGGGGAAAGCGAGAGTACCACTTATTTCTCTGGCCCATGATAAGGCCATTACAGGTATGTTTGAGCTTGTGGATTCAGAAGGCGCCGCCAGTGGCTACATTGATGTGACTCTCAAATGGAAGTTGACATATTTGCCTCCTCCTGGCTCAGCCATCAGTGCAGAGGAGCCTAAGTTTATTACCAAAAAGACTCCAGTGAAACTAGCTGAGGAAGATGGAAGTGAAAAAGGAGAGCAGGAGAAAGAGCTTCATTCTTCACCACGTTTAACAGTTTCTGAGAGCCCACTGCCGAAGCCTAGGCTGCGTACCCTTACAAAAACAGCTACTAAAAAGGTTTCATTCTTTGAAGACACAGATCCTGAAATTcagATGGGTAAAACTACACCCCCTGGTGGTGATCAAGAAAATGCTACAGTCTCAACAGTAAAGACTGTAAAAGTTGCAGAAATTGGGGAGGCCACTACACTTTCAAGGGAGGAAGATGATGAGGAGTCACATTTTTCAGAAGGCCAGGTGATTGCAGTGAGCTCTCAGTCTCTGTCTGATGAGTCAGAAATCTCTGAAGAACTACAGGATCCAGAAGAAGACATACAGCAGGTGGAAGGCACAGATCTGAGTGAATCGATCCTTTCAGACAGCGATGACTGCATTGTGCCTGCTCCGAGCACACAGAGCAGGAAGCGGCCATTTGAGCGGATCCGTGTGGAGATTGTGTCTCTGAGTTTGAAGCCAGACTCCAGGGTCACAGTTGACTCCACTGTGATCAGGCTGTTTGTGGAGTATTGTTTCCTGGACCTTCCCACAGTGGAGACACCCCTGTCACTGCCCAAACCACCGCCTGGTCAAAGCATCTATTACAACTATAGCAATGTGATCCATGTGGATGTGGAGAACAACCAGGCCAGGCGCCATACCCTAAGAGCTGTACTCGAAGGCAGGAACAGGAAGCTAGAGAACATCAAGTTTACAGTAGTTAGTGACCCacctgaggaggaggagcaggaaaAGGAGTGTGAGGATGTGGGTGTGGCTTACCTCAGGATCCCTGACCTTCtagagaagcagagagacaTGATGGATGTTAGCCTCAACATTGTGGATGTGCAGGACAGCAGTGAAGTGGTGGGCAGTCTGAAGGTGACTGTTGAAGCACTGGAAGCTCTACGATCCATCATGGAGGATCCCGACCACGACCACACTTCTCTGGCCTAAGCTTCATTCCAGCAGCTCCATACTCACACAGACCATTTTACAGCATGTAGCTGCAGTCAGGACAGTCAGGTGAAAAAGTAGGGTTTGTTTACAGTGGTGGGTGCGGGTGAAAAATGtataagcagttaaaaaaaatgggaaaaagcaGAACAAGGGGTAAAAGTAGATTTTCCAAAACACTTCCAGCCTCTCAGCATTTTGGCATGTACTCTGTTGAGTGCTGTAAAGGAGTATTTaaacttattaaaaacataacCTTTGTTTAGATGTTGAGCCTTCATTTGATCatgtagtttttattttgaacCAGTAGTGGAGCACATAAATGTATCTGTGTTCAAAAGTTGGGAGAATATagaataatctaatttaatttgAACTCTCAGTTCTTTTCTTAACCGTTTACAAAATTACGACAACAGACCTAAGCATATTTAGGTGGGTTTGTGGTTTTCTGGTTGGTGCGCTCAATACTGCACTCAAGGTGTTTAGTCAAGACTTAGAGGAAggagtctttgttttttttttatattcccctcaaaatgaagaagaaataaTAACAACATGTGTGACTAAAGCCCTCTCAAATGAATAACATCACAAGGCATTGCTTCTTCCCCTTACAGTGGAACCCTGTGTGTCATGCTTTAAGATGATGTGAATATGTTTCTGTGACTGCCTCCCTGGGTATAAGCCCCTAGTGCTCAGTTTGATGTGGTGATGATGTTTAGCGCTTTAATAACTGTGCTTAATGAAAAGCCTGTTAAGCCTCATTAGCCGCTGTGTGCCACACGGCTGTTTTTGTATTGAAGAAGTGGAATGGAATCTAACTGAATTTAATGGGATTTAATCCATCTCTTTAAAATGCTAATGCCCATTTTCACGCGCGTTGACTCACAGCACACATGCTCTCCCTCTGCTGGGTGCTGGTTCTAGCTGTCTAACGCAGaaagcaccagcagcagtggATTCTTATGGTCTGACTGGCTTTGGTAATGAAAGTTTTAGCCTTTACTGTGAGGGCTCTTAGAATGTGATTTTAAGTTAAGAGAatagtattgtatttttatacaaatgtattttattcgCTTGATGAGAGATTTGTTTTAGACATTGTTTTATAGAATTTTATAAGTCAGTATTTGTTGAtgtatttgctatttattggcTGTTTGTACGGTACCTGgtggttttattaaacatttgttttttat

Function

GO:

id name namespace
GO:0009880 embryonic pattern specification biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99239 lncRNA upstream 46870 14844445 ~ 14844664 (+) True G73598
TU99198 lncRNA upstream 214740 14675873 ~ 14676794 (+) True G73566
TU99158 lncRNA upstream 243972 14646443 ~ 14647562 (+) True G73532
TU99150 lncRNA upstream 252981 14637947 ~ 14638553 (+) True G73527
TU99154 lncRNA upstream 272210 14614418 ~ 14619324 (+) True G73529
TU99411 lncRNA downstream 212900 15123872 ~ 15126987 (+) True G73710
XR_002650246.1 lncRNA downstream 275277 15186249 ~ 15187955 (+) True LOC111193097
TU99416 lncRNA downstream 277923 15188895 ~ 15189386 (+) True G73715
TU99417 lncRNA downstream 277923 15188895 ~ 15189386 (+) False G73715
TU99420 lncRNA downstream 277923 15188895 ~ 15189386 (+) False G73715
XM_007228193.3 mRNA upstream 68200 14814804 ~ 14823334 (+) True hsd17b2
XM_007228187.3 mRNA upstream 79036 14801718 ~ 14812498 (+) True LOC103031298
XM_022672174.1 mRNA upstream 94301 14788767 ~ 14797233 (+) False LOC103031607
XM_007228203.3 mRNA downstream 164487 15075459 ~ 15081023 (+) True irx5
XM_022672185.1 mRNA downstream 397557 15308529 ~ 15351344 (+) True lrrk2
XM_007228205.3 mRNA downstream 398087 15309059 ~ 15351344 (+) False lrrk2
XM_022671918.1 mRNA downstream 444763 15355735 ~ 15357894 (+) True LOC111193056
XM_015601252.2 mRNA downstream 451796 15362768 ~ 15380544 (+) True LOC103041261
TU99159 other upstream 241983 14648829 ~ 14649551 (+) True G73533
XR_002650241.1 other upstream 1993603 12871484 ~ 12897931 (+) False LOC103043719
trnar-ucg_4 other upstream 2288110 12603352 ~ 12603424 (+) True trnar-ucg_4
TU97933 other upstream 4809394 10078579 ~ 10082140 (+) True G72621
TU97487 other upstream 5742115 9142899 ~ 9149419 (+) True G72281
TU99974 other downstream 1375704 16286676 ~ 16288329 (+) True G74169
TU100573 other downstream 3543879 18454851 ~ 18455197 (+) True G74649
TU100801 other downstream 4171844 19082816 ~ 19085556 (+) True G74832
TU101007 other downstream 4617019 19527991 ~ 19533073 (+) False LOC103044129
TU101298 other downstream 5292647 20203619 ~ 20207922 (+) True LOC103028745

Expression Profile