RNA id: XM_007228201.3


Basic Information

Item Value
RNA id XM_007228201.3
length 2302
RNA type mRNA
GC content 0.48
exon number 2
gene id irx3
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 14964498 ~ 14967301 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACGCGAAGGCTCCTGCTCAATCCTGCGAGGAGGCgatgtgtgtgagcagtgtgatgtgtctgaggagtgtgtggagtgtacgGAGCTGACCTCagtccccccacacacacagcactaaaGCGCGTCCGCGGCAGGACAGGGCAGGGAGCGCGCGCTGCTCATCGGCCCGTTGGTTTCTCGCGGATTTCTGGAACTCAAAGGAAAAGCGCTGCATCTCCGCACGAGCCTCTCCGGACAGGATACTCCGGACAGGAACATGTCCATCCCGCAGCTTGCCTACAAGTACGGCCGGGCGCTGTACCCCGCCGAGGCCCCCCACGGGCCGCCCGGGGGTCTGTCCGGGGCACTGGCCGCCCTGTACGGAGCGCCCTTCAGCGGCAGCAGCCACGGATACAGCGCCTTCCTGCCTTACTCCGGCGAGCCGGCCGCGCTCGGACACCTGGCCTCTCCATACGAGCTGAAGGACAGTCCAGGCATCCAGCACCCAGGCTTCCCGCACGCCCACGCGCCCTTCTTCCCCTACGGCCACTACCAGCTCGGCGACCCCTCACGGCCCAAGAACGCGACCCGCGAGAGCACGAGCACCCTGAAGGCCTGGCTGAGCGAGCACAGGAAAAACCCGTATCCCACCAAAGGCGAGAAGATCATGCTGGCCATCATTACCAAGATGACCCTCACACAGGTCTCCACCTGGTTCGCCAACGCCCGCAGGAGACTGAAGAAGGAGAACAAGATGACCTGGGCTCCAAAGACCAGGACAGACGAAGATGGGAACGTGTTCGCGAGCGACAACGAGGAGGGCGAGGAGGAGGACAAGAGGGACGATGACGACGACGAGGAGGAGATCGATCTGGAGAATATCGACACCGAAAACATTGAGAGCAAGGACGAGCACCCCGATTACCGGGGCGACCTTAAACCGGACTCCAGAGGGGCAGACAGGAGCGACTCGGAGGAGTTCGAGGACACGCAGGGGCATGAGAAAAGTTTCATAAAGAGCGTGATAAAGGAGAGCAGGGACAGTACAGCACAGGGGACACGGGACGACCACAGCAAAGGACCAGCAGCCGAACCTTTGGGCAATCTGAGTCCACCGCAAAAGCCCAAAATCTGGTCGTTGGCTGAAACCGCGACTACACCGGACAACCCGAAAAAGTCCCCGCCGCTGCTGAACAGGAGCCACGGGCCACTGCAGAGCTCGGTGGGGAACCTCCACAACTGGACTAAAATGGCCTTTTCAGCCCAGCACATGTCTTTAAGTAACCATTACCTGGGACTTAAACACGCGGCCAACAGCACAGTCTCAAACCAGCACATGGACAGCAGGACTCACGTCTTATGAGCCGTTTCTAATTGACAATGGActctgaatattattaatattattattatttctttttcgtAATGTTTTGATATTCTCCAtctaaatgtaataattttcACACCACAAACACTGCTTTGGTTTTccgaaattatataaaaatacctattgattttttaaaaggaaaaaaaaacccgacacatttaatttgtaatagACGGATGTTGCCTAGCACTTCCCTTCAGATGAGAGTATAATAGAGTAAAGGTTTATATTGCTaacttatgaacattttcaccAGGTTTATTTATCAGATCACGCTATTGTCTCATTTATCTCTGgacacatttctttttttttattcacgaTCTGCATTAGttccattattttatttctatctctattattgtttttatttttgtgtttgttgcaGAATAACACACCAAGCCAAAATTAAGCACCGACCCATTCTCTCTGTGTGAGATCTAAAGAGTGCATGTTGCCTTTTTATGAGCACTAATGAGCCTCAATCGCTCTAATCTTGTTTTagacctttacacacacacaaaacacacacacacacacggacgtAACTAAATGTGTTTTCGcattttccagagcttttttttttaaactgcagatTGCATTCGGTAATTTACTCCAAATGCAGCGCTTTTAGAAGTGTATTTTGATCGCAATTCGTTCCCTTTAGCACAcacaaaaatgcattaattttagaaaaattaaaacacctATATTGACATATATTTTCCCAACATACATCATTTTATACTTGTCATGAAGGCACGTTGTGTTGAACCATTTCATTCGTTGCTTTTCTAACTGGTGTTCACTACGGAATGGAGTAGGTTGTGTTATTGGTTTTGTAAATGTAAGATGAATTTTACCTACTTGAAAATAATATTGTacaaaactatattttaaatattaaaaacgaAGACACACTTTTATCCAACTGAA

Function

GO:

id name namespace
GO:0039023 pronephric duct morphogenesis biological_process

KEGG:

id description
K24889 IRX; iroquois-class homeodomain protein IRX

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99364 lncRNA downstream 53818 14909107 ~ 14910680 (-) True G73679
TU99359 lncRNA downstream 59678 14902388 ~ 14904820 (-) True G73675
TU99358 lncRNA downstream 62205 14900668 ~ 14902293 (-) True G73674
TU99357 lncRNA downstream 63033 14900668 ~ 14901465 (-) False G73674
TU99350 lncRNA downstream 70634 14891472 ~ 14893864 (-) True G73671
TU99392 lncRNA upstream 113756 15081057 ~ 15081299 (-) True G73694
TU99395 lncRNA upstream 118193 15085494 ~ 15085724 (-) True G73697
XR_002650245.1 lncRNA upstream 118479 15085780 ~ 15111364 (-) False LOC103036159
XR_002650244.1 lncRNA upstream 118479 15085780 ~ 15111364 (-) False LOC103036159
XR_002650243.1 lncRNA upstream 118479 15085780 ~ 15111364 (-) True LOC103036159
XM_007228197.3 mRNA downstream 74743 14868932 ~ 14889755 (-) False rbl2
XM_007228196.3 mRNA downstream 74743 14868932 ~ 14889755 (-) True rbl2
XM_022672177.1 mRNA downstream 80972 14868932 ~ 14883526 (-) False rbl2
XM_022672176.1 mRNA downstream 106902 14849582 ~ 14857596 (-) False LOC103033621
XM_007228195.3 mRNA downstream 106903 14849582 ~ 14857595 (-) True LOC103033621
XM_022672180.1 mRNA upstream 33874 15001175 ~ 15074769 (-) False LOC103035545
XM_022672179.1 mRNA upstream 33874 15001175 ~ 15074769 (-) True LOC103035545
XM_022672181.1 mRNA upstream 156513 15123814 ~ 15214284 (-) False LOC103037068
XM_007228204.3 mRNA upstream 156513 15123814 ~ 15213323 (-) True LOC103037068
XM_007228214.3 mRNA upstream 260738 15228039 ~ 15290712 (-) True LOC103038669
TU99163 other downstream 419060 14542209 ~ 14545438 (-) False LOC103025073
TU98709 other downstream 2343142 12610834 ~ 12621356 (-) True G73172
TU98667 other downstream 2399532 12564348 ~ 12564966 (-) False fbxo31
TU98668 other downstream 2399624 12564348 ~ 12564874 (-) False fbxo31
TU98666 other downstream 2399700 12564348 ~ 12564798 (-) False fbxo31
XR_002650248.1 other upstream 794463 15761764 ~ 15778423 (-) False LOC103046265
TU100463 other upstream 2909725 17877026 ~ 17883786 (-) False nrg4
TU100498 other upstream 3015446 17982747 ~ 18029747 (-) True G74591
TU100745 other upstream 3971873 18939174 ~ 18940464 (-) True G74791
TU100809 other upstream 4103637 19070938 ~ 19072888 (-) True G74838

Expression Profile