RNA id: XM_022672185.1


Basic Information

Item Value
RNA id XM_022672185.1
length 9161
RNA type mRNA
GC content 0.49
exon number 52
gene id lrrk2
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 15308529 ~ 15351344 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCAGTAAATCTTCTATTAGTTACAGGTCTTGGTGTTGGAGGAGTAGTCTGGTCTGTGCAATTCCccctcctgctcctgctgctgaagCTTCTTCCTGTTTGAAAGTTGCTCCTCCAGTCATATGACTCACAGGTCGCTCATTACTGCGGCCAGTCCCGCCTGAGGACTACAGCCGAGGAGAGACCGCTAAAGAGACGGGCATGCTTTCCTCACACGGCGTGGAGCAGAAGGGGAACTAAGCATGTTTCCACTATTTCACAGAGTTAGAGAGTCCAGCGGCGGCGGTAGAGACGCTCAGTGAAGTTTCCTCACGTGTCTGGTGTTGGAGAAAAGCGGGCTGTGCTGCGCAGTGGTGGCGCTCGCTGTatttacactgtgtttaatgtgcCAGTGGAAAGGTTTTACACATGTGTTTACTGCCAGCTGAGGGCCAGCACTGTAACCAGCACCATGGTGAACAAACAGGACCTGGAGGAAAGCGTGAAGAAGCTGTTAGTGAGGCTGAAGAACCTGGAGGAGGGCAAGCAGCTGGGCACCATGGTCCAGATCATGCAGGACCTGCTGTTCCTCGCTCACACAGATGAATATGCTGCAGAGCTATTTGAGGACAAAAATGTCCATGAGCCACTGATGCTGGTGTTATCAACCTACAGCAACAGCAAAGTTCAACAGGTGGGATGGTCTCTACTGTGTCGTCTGATGGAGATCTGCCCTGCCACTCTAGACAAGCTGGTCAGGCCGCTGGGAGCTGGGAGTAGCTGGGAAGTTTTAGGTGTCCACCAGCAAATTCTGAAGGTGCTGTTCGTGCATAATGAAGACTGTAAAGTGGTAATGATAGGACTGCGGGTTCTAGCCTTGCTGTTAAAGAGTGatgagctgctggtgcttctTCTGGAGGAGGAGATGGATGTGTTTGAGCTGGTGGTGGAGGCTATGAAGACATTTCCTGAAAGTGAGGAGGTGCAGCTTCAAGGCTGCTCTGCTCTCCGCCTGCTGCTGGAAAGAGTTACAGAAAGCCATCTGGTGGAGTTTGTTGATAGGAAGGACCATGCAGTGGTTCTTCGTGCTCTCTCGAGGTTTAAGGACTGCAAAACTGTAGTGTTGCCTGCACTGCAGCTCCTCATACCATTGACTGAAACTGAAAGCAATGTTGAGATCCTGATGTCCAAAACTGAAAAATGCTACAGTTTGGTGTGTGAGGCAGTGGAGGCGTGCTCACAGTCGGAGGCTGTGCAGGAGGTGGGATGCTGCTTACTACAAAAACTGACCTCAGAAAGCTACTTCACTATCCTGGTGCTAAATGGTGTGCACAGGCTTGCTGTGAATGCCTGTCTCAGCTATCCTGACAATGCTACAATCCAGACTGCTGCCTTTTCTTGCCTTGCTGCActtacaaagagcattgtggAGAATAAAAGCCTTGAGAGAGAAGTCagtgaggaggaggatgagaggATGAAAGAAGATGGTGATGGCGCAGAGGAGAGCTTGGTTTGGAGAGATGCTTGTTGCATAGCTTTGGAAAGACATACTGAGAATGAGAAAGTACAGGAAGCTGCCTGTTGGGCTTTAAACAGCTTGCTGCTTTATGGGAATGCACGCAGTCATGTATATTTGGAGCCAGAGGGAAGGCCACCGGTACATACTCAGATAATGGCTGTGATGCTTTTGCACTCCTCTAATGTTCGTGTGTTCCAGGCTGCTACATCCACACTAGGCACTCTCATACGTAGACACAGTAAGATGAGGTCCTTGCTGCTGTCCCATGGCATCCATTACAATATTGTGGAACTGATGAAGAGACACGCTGACTCCAgtgaagtgtgtgagagtgcctGCAAGTTTCTACACATACTTTTCCAGGGAGGAAGGGTAAGTCTGGATGACAGTGTTATGGCTTTGGGGCGCATCCTGATCTCAATGAAAGATCATAACTTTGAGCCTGAGGTCCAGCTGGAGGGGTTGAGAGTCAGCCTGGTGCTTCTGAACCCAGACCTCAGTTTGAGGGAGCACGGCGTGTCTGTGGCAGATCCAGACGCTTCAGATGTGTCTCTGAGAGTGCTGAAGAACCAGTGTGTGGTAGAGGAAGCTCATACCATTTACCTGGAGGCCTTGAACAGATTCATCAGCAGTGAGGAGATTCAGGTGTGTGGGCTCGGTGTCCTCTCTGCACTGGCTGACTGTTCTGGAGCTGTTGATGTCATGTGCCAGCAGGGGGCGATAGACACAGTGCTGCACACACTACAGATGTTTCCTCGGAAACGGGATATTCACTACTGGGGTCTGAGCCTCCTGTTTCACCTGATCTCTAAGAAGAAGCTGTCGCGCATGATTGTGCCTGTATTAGCCTCTGTTCTGGTCGCCTCTGTGAGGCAGCACAAGGAGGATGCAGCAATGCTTCTGAAGGGTTTTCAGGTAATCTGGAAGCTGTTGGACACCTGCTCAGGTGCAGCTCCTGAGCTGGGGAAAGAGGGTTTTGAGAAGGAAGTTTTCCATCAGCTGAGAGAGAGCTCTCCTGATCAGAGAAGTGATCCGcttcAGAAGCTGAGCTGCCTGTGCCTGTCAAAGATGGTGGTGGACAGTGATATCCGTTATCGTCTGCTGGAGAGAGCGTGTGAGGAGGGAGATGTGGTAATGGCTGAGTGTCTGATTCAGCTGGGGGCTGATGTCAATAAGAAAGCCAAGACTGAATCTCTGATACATCAGGTGTGTGAGCATGGTCCGGCCCTGGCTCTGGTTGAGGTGCTGGTTGATGGTGGTGTTCATGAGCAGCAGTTGCGTGGGGCTCTGGCGGTGTGTGTGAAGAGGGGAGACAGCCCTGTTGTCACCTTCCTCCTGGGCCGGCTGGGTCTAAAACCCACCAGAAATGCACTCTGTCTGGGAGGCTTTAAGCTGGGACGTCTGGAGACCTCGTGGATCAGTGGACTCCTGTTGGAGCAGAGAGCGCCCTCTACAGCTCAGAAGAAAAACAgtAAAGGCCAGTGGCTTGCGAGGCACATCATTGCCCTCCAAAGGAAGAGGGGTCAGGCTGGAGTTTCTGGTCTACAGAGTGATGTAAACACTTCAGGGTATTTCTCTGATGAGGAAAGCGATGATTCCTCATACATCTCTTTAGATGGCAGCATGGTCTTTGATGATGTAGAGAGTGATGCAAGCGATGGCTCTGCTCGAGCTTTTAGACTTTACTGTGATTCACCGGAGGAGTTGAGAGGGCGGCCCAAAGCAAGGCAGCAGGGACGGCAAAGACGTGCcgtttctgagGGAAGCCATGGTGAATCTGATATTAATGGGTCACTACACAGGAGACTGAACAGGAACGGCCAGATCCAAAGAGgaatgtttTTTTCCGAGACTTCCTCCCCTGGTGGTCCACTGTCTGGTGTGGTAAATGGTCACATCACCCTGCTGGATCTGTCAGGAAATGAACTGGACTCTCTGTCGTGCTTCATGGGTGATAGTGTTGTCCAGCAGCAGCTTAAGCACCTCCTACACCTTGATCTCAGTGGCAACAAGCTATCAGAGATTCCCAGCACTCTCTGTGAGAGTTTGCAGAATCTAACACGACTGGATCTTCAAGACAACCAACTGAAGTCACTTACTGCAGAGCTCCTGAGTCTACCATCTCTGAGCACGCTCAGTGTGGCACAGAACTGTGTCGGCCCTGTGCTCTTTTTGAAACCACACGTACGCTGTCCAACTCTCCGCCAGCTCAACCTGTCTTTTAACTGCCTCACTGCATTCCCTTACCAGCTGGGCCAGGCCATGGAGAACCTGGAGGACCTCAACCTGGAGGGGAATCAAATCTCTGaactctcgctccctctctgtCTAGCAGAGATGAAAGCGCTTGATGTTTCTAAAAATGGAGTAGCAATGATCTCTGATGACTTCTTGTCTGGGTGCTTTAAGCTAGAGACATTCAGTGCATCCAACAATAAGCTCAGCTCTATGTCACACTTGCCTTCTAAAATTACAACGTTGAAATTATCCCAGAACAATTTCAAAAGTGTTCCCTATGCAGTTCTCAATTTACCAAAtttgcgGTCAGTGGACATGAAGAGTAACAGTATCAGTGTCCTGCCTGGTCCCTCTGCGTGGGCTAGTGCTAATCTAAAAGAGCTCCTGTTCAGTCAGAACCAGATCGCTGAGCTGGACCTCAGAGAACCAGTCCAGAAGTGGGCCCGTCTGGAGAAGCTGCAACTGAGTAATAACAAGCTTACTGAGATTCCTCCTCAGATTGGGCTGCTGGAGGAGTTGACCTCTCTAGACGTGAGTGGAAATGTTGGCCTGCGCTCTTTCCCTGACGAGTTGGGAAAACTGGTGCGGCTGTGGGATCTTCCCCTGGATGGACTACAGCTCCAACTTGACCTCAAACACATCGGCAACAAGACCAAAGACATTGTCAGGTACTTCCAGCAGCGCTTAAAGAAAGCTGTTCCCTATTTCCGCATGAAGCTGATAGTGGTCGGAACTGCAGGCAGTGGGAAGACTACGCTGATCCAGCAGCTGATGAAGCATAAGCGCTCCCAGTGGAAATCTGGCATCGGTGGAACCAAAATCAGTGTCAGAGACTGGACAGTTCGAGACAGAGACAAGAAAAACATGATCCTGAACGTCTGGGATATCCCAGGTGGGGAGGAGTACAGTGAATCTCACCCTCACTTCATGAGCTCCAGAGCCATGTACTTAGTGCTCTATAACCTGAGTAAAGGAGTTAGTGAGCTGGACACAGTCAAACCCTGGCTTTTCAACATCAAAGCACTAGCCCCTCTATCTCCTGTTATACTTGTTGGGACTCACGTGGACATGTGTGAAGACCACGTATTACAAGAGTGTATGCAGAAGCTCCGTGAGGATGTGCTGATCCAGCTGGGTTTCCCAGCCATCAAGGAATGCCCCATTCTGTGTGCCTGTGAGGAGTCAGACTCCATTAGCAAACTGCGCAAGTCCATCGCCTCGGGGGCCAGTTGTTTTAAGATCCAGGGGCAGCCAGTGATGGGGCAGCTGGTTCCTGACTGCTATGTTGAGCTGGAACGGAGAGTTTTGCAGGAGAGGACACGCGTCCCTCCTGAATTCCCTGTGCTCAGACACCAGCGTCTCCTGCAGCTCATACAGGAGAGCCAGCTTCAGCTGGAGGAGGGAGAACTCCCTCACGCCATCAGGTTCCTCAGTGAGACTGGTGTGCTCCTGCACTTTGATGACCCTGCACTCCAGCTCAGAGACTTGTATTTTATTGACCCCCAGTGGCTGTGCAACGTTATCTCACAGACTCTCATTCTTAGCAGTTCAGGGTTGTGTGAGAACACCACGGGGGTGGTGCTCCGCTCTGTGTtgactctgtgtctctctgagAGCCGCTGCTTTCCCAGGGAACATCTCATGCAGTACTTTAAACTGCTGGAGAAGTTTCAGATTGCTTTGCCTTTCGGGGACGAGCAGTTGCTGATACCCAGCAGTTTGCTTCATCATAAACCAGTAATTAAACTCCCTCACTCTGAGAACTCTGAGATGATCATGAGGATCTATGAGATGCCCTATTTCCCCATGGGCTACTGGTCCAGGCAGATCAACCGGCTCCTAGAGGTCTCCGCCTTCATGCTGTGTGGCAGAGAGATCCCTTTAAAGCCCACACCTATCACCTGGAGGACAGGCATCTACCTAACGTGGGATGCTGAGACCTACTGCCTGGTGGAAGCATACCCAATAGAGAAAAACCCTTCAAGCTTTGTTAAAGTTACTGTGCCTTGTTCTCGCAAAGGTCAGGTGTTACTGGGGCAGGTGGTGGATCATATTGACTCTGTGCTGGAGGAGTGGTATCCTGACCTCCTCAACACTGATATTCATGGTGATGGGGAAACTGTGCTGAAGAAATGGGCCCTGTACAGCTTCAATGATGCGCAAGAGCAGAGCAAGATGCAGCTGGAGGAGCTGCTGAAAAGCATTGATAAAGATGGTCTCTTGGTGAACAAAGAGGACCCTCAGTGTACAATACCCATCTCTCAAATCTGCCCCGACCTGATCCTGATTGATCAGCCTGCCAGTACAATGTTGGACCCTGAAGAACTGGAGAAGGAACTCTCCAAAGAGTACCTGCTTGGAGATGGAGGCTTTGGCTCGGTGTACAGagcaatatataaaaatgaagatgttgccattaagatttttaataaacatgcgTCAGAGCTCTATGTTCATAGACTAGTGAGACAGGAGTTGACCGTGCTGGGCAGGCTGAATCACCCCAGTCTGGTGGCTCTGCTAGCAGCAGGAAGTTCCCCTCATGTGCTGGTGATGGAACTGGCTCCGTGTGGCTCACTGGACTCACTGTTTGAAAACAAAGATGGCAGCTTTAGCCGCAAACTGAAGCACAGGATAGCACTACAGGTGGCAGATGGCCTCAGGTATTTGCACTCTTCCATGATCATCTATCGAGACCTGAAGCCTCACAACGTGCTGCTGTTTACTCTGAAGACTGACTCGGAGATCATAGCTAAGATCACTGATTACGGCATTGTTCAGTACTGCTGCAGTATGGGAGTCAAGAGCTCAGAGGGCACTCCAGGGTTCCGTGCTCCTGAGGTTGCTCGCGGTAATGTGATCTATGATGTTCAGGCGGACGTTTACTCGTTTGGTCTTTTGCTTTATGACCTCTTGACCTGCGGACAGAGAATCTCGGATGGTGTGAAGTTCCCCAGCGAGTTTGATGAGATTGCTGTGCAAGGCAAGCTACCAGATCCAGTAGAGCACTACCACTGTTCCCCATGGTCAGGATTTCAGAACCTAATGAAGGACTGTCTGAATGAGAACCCTCAGGACAGACCCACTTCTGCACAGGTCTTTGATCGTCTGAGCTCAGGCGAGATGCTGTGTCTGATTAGGGAGCTGACTTTGGACGGGCTGCCCTGTGAATGTTTTGTTGTCTCCTGTGTTGGTGGGAGTGTGGGCAGAAGTGTGAACGGAGGTGCAGGTGCTAGAGTTTGGATGGGAGGTGGCAGCAGCAGCCAGAAGCTCGGCTGTGTCACCTGTGTGGATCTAGAGACTGAAAAAAGCACCAGATTGGAGATTGACCAAAGCCCTGTGCTCTGCCTGGTGACTGTAAGAGTGCCTGAGGAGTCCCATGATTGGCTGGTGGCAGGGACACAGCTGGGATCACTGGTTGTAATGGATACAAAGAATGCTCAAGTTTTGCACCATTTGCAGAGTGTGAAGGATTCAGTCACCTCCTTGTTCTTTCACACACCCACTCAGCGCAGCTGTTTAAAGAAATACCTATTAGTGGGGACAGCAGATGGAACCATTGTCATTTATGAAGATGCAGTAATAAAGTGTGCAGATGGTGCTCCAGTGAAGGTGGTGAAGGTTGGGAATGTGAATACACCGCTGATGTGTCTGGGTCTGTCAGGCCACTCTCAGGACCGCAGCACTATCTGGGCCGGCTGTGGCACTAAAGCGTTTTCACTGTCTGTGGACTACAGCATCTCAAAGACTATAGACACCTGGACTGCCAAACTCTTTGTTCAGCAAAGATCAACCAGCAGTGAGGCGTGTATCTCTCGACTGGTGGTGGAAAAGCACATCTATCTGAGTAAGACCGGGGGACACATTGTAGAAGTGTGGGACAAGAAGAGCGGGAAGATGATTGACCTCATCGATTGTGTGCAGTTGTTAAGGAAGACCAAACTGAGTTGTGAGACAGCTGGAATAATGGAGTCATCCTGGGCCTGTGTGAAGACCCTACTGGTGCAGCATAATGGCACCCTGTGGATTGGCACCAGAGCCGGGCACATCCTGCTGGTGGATCTGTCCACGCGTGAGCTGCTGCAGGCAATCAACCCCAACTGCCACTCAGTGCGCAGTATGGCCTCTGTTCTGATAGAAACAGAAAGCCGGAAAAGCGTCATTCTGGTGCTGGGTAGGCGGCTCCACATGTCTCAAGAGCAGAACAGGCTTGACGAGAAATCTGTGTTAATGGTGTGGAGCAGCACTCTGCCACAGGAAGTGAAGGATTTGAAAGCACATTGTGAACTGAGAGAACAGATCAAAGCCAAAATGAGAGAGCAGGCCCACACACAAACGTTTCAGTATGAAACAACACCGAACACTCTGCTGTCCTCTCCACTCTGAAATTACTGTGGCTTCGTCTTTATGAAAAAGGGACCTAAATGTGTGATCTCACTGCTGTTGGAAATTTTGCACAATTAAGGGACACCTGTTTATAACGCTGGATTtagatgtactgtatattttttattaggaattttgTTACTACAGAATATACTCCACCTTCTGTGAAAAGACTGCCTTATAATATTCAGTGTATAGATGGGCTTGTCTTTGGTGACATGCTGTTAAAGCCCTTTCCACAGTCCATTTTGAACTGACAACTGTGTAATCTGTGTGTACTTGTTATACTTGTGCTTAAACCAAGAAGATTTAAGTGGAAATGTAGTTCATGGGTAGATTGGTTTTCCAGGTGAGGGAACCTGGATATAGTGCAGCTGGAAATTTCACTATGGATGGACATACACACACCCTAAACTATAGTGCCCTTCCTCTGACcatttgttctgtgttttaataaggTAACTCTAAGCAACTCCTTTATACCTCTGTTCAACCTTAAGGTGTAGTTTCCCaaacagagattaagcctaatCTTGGActacagagctttttaaatacacatttccaTGAAAGGAAAATGTAGTCTAGGACTCGCCTTAATCCTTGTCAGGGAATCCGACACTTAATGTGCAGCCCTACAGAAGAGAACTGAAAGCTCTCTGTGGCcctacattgtttattattgattatgtgCTGCGtcagcattaaaataataatttatatatgtaaaaaatataattttacactACATAGTATCTGTATGTTGTGAAATATTGTACCCCAGTCCACCAGCTTTACCTACACATGTGGCATATCTTATAGAACATTTATAAAGGGATGACAATCATATAAAGTAAAAAGAATCAAATCTGTAAAAGAACTGGAGAATTAGCCAAAGAAAtgaaatgtttgtttattttattagaaaatgagtgtgcatgtctgtgttatataaatgtaattgttCTGTGTATGCATACACATTTGATTTGTACTTGTGAGCCATGTCAAAGTTGTTATAAaggttttttgttata

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005524 ATP binding molecular_function
GO:0005525 GTP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08844 LRRK2; leucine-rich repeat kinase 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99416 lncRNA upstream 119143 15188895 ~ 15189386 (+) True G73715
TU99417 lncRNA upstream 119143 15188895 ~ 15189386 (+) False G73715
TU99420 lncRNA upstream 119143 15188895 ~ 15189386 (+) False G73715
XR_002650246.1 lncRNA upstream 120574 15186249 ~ 15187955 (+) True LOC111193097
TU99411 lncRNA upstream 181542 15123872 ~ 15126987 (+) True G73710
TU99527 lncRNA downstream 14299 15365643 ~ 15368383 (+) True G73799
TU99526 lncRNA downstream 15053 15366397 ~ 15367596 (+) False G73799
TU99528 lncRNA downstream 15053 15366397 ~ 15368383 (+) False G73799
TU99525 lncRNA downstream 30734 15382078 ~ 15383583 (+) True G73798
TU99529 lncRNA downstream 32679 15384023 ~ 15384237 (+) True G73800
XM_007228203.3 mRNA upstream 227506 15075459 ~ 15081023 (+) True irx5
XM_007228198.3 mRNA upstream 397557 14891534 ~ 14910972 (+) True rpgrip1l
XM_007228199.3 mRNA upstream 397557 14891534 ~ 14910972 (+) False rpgrip1l
XM_022672178.1 mRNA upstream 397557 14891893 ~ 14910972 (+) False rpgrip1l
XM_007228193.3 mRNA upstream 485195 14814804 ~ 14823334 (+) True hsd17b2
XM_022671918.1 mRNA downstream 4391 15355735 ~ 15357894 (+) True LOC111193056
XM_015601252.2 mRNA downstream 11424 15362768 ~ 15380544 (+) True LOC103041261
XM_022672186.1 mRNA downstream 11424 15362768 ~ 15380544 (+) False LOC103041261
XM_007228215.3 mRNA downstream 52498 15403842 ~ 15418547 (+) True LOC103040017
XM_007228221.3 mRNA downstream 85055 15436399 ~ 15449870 (+) True slc5a12
XR_002650242.1 other upstream 387526 14891534 ~ 14921003 (+) False rpgrip1l
TU99159 other upstream 658978 14648829 ~ 14649551 (+) True G73533
XR_002650241.1 other upstream 2410598 12871484 ~ 12897931 (+) False LOC103043719
trnar-ucg_4 other upstream 2705105 12603352 ~ 12603424 (+) True trnar-ucg_4
TU97933 other upstream 5226389 10078579 ~ 10082140 (+) True G72621
TU99974 other downstream 935332 16286676 ~ 16288329 (+) True G74169
TU100573 other downstream 3103507 18454851 ~ 18455197 (+) True G74649
TU100801 other downstream 3731472 19082816 ~ 19085556 (+) True G74832
TU101007 other downstream 4176647 19527991 ~ 19533073 (+) False LOC103044129
TU101298 other downstream 4852275 20203619 ~ 20207922 (+) True LOC103028745

Expression Profile