RNA id: XM_022672183.1


Basic Information

Item Value
RNA id XM_022672183.1
length 8265
RNA type mRNA
GC content 0.48
exon number 33
gene id LOC103038669
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 15228039 ~ 15290712 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGTCAGCGGCGGCGGCGCGTGAGCTGCGCTTCTCCCGTCCGGCTCGCGAGCTCTCGAGCAACGGAGTCGCTTCGGAGTGCATAAATCTACCGACATATGTGCAGACGGAGCGGGGTTCCTCCTCCGGCAGGCGCCCGGCTCGTAGCTGTTTAATGACGGGGGCGAGGCGGAGGTGCTGCTGCTCGTGCTGCTTGGTTGTCGCGGATGTTTGGCGGAGGGCGATAAATTAACACGGCGACACGGGATCATGACGACCGGGCAGGACGAGAGCTCGGTCCGCGTGGCGCTGAGGATTCGTCCCCAGCTGGCCCGTGAGAAAATAGAGGGATGTCACATCTGTACGTTTGTGACCCCAGGAGAGCCCCAGGTGATCCTGGGGAAGGACAAGGCCTTCACGTTCGACTATGTGTTCGACATGGATTCTCAACAGGACACTATCTACTCTAACTGCACAGAGAAGCTGATAGAAGGCTGTTTTGAGGGCTATAACGCTACCATCTTTGCCTATGgacagACGGGCTCTGGGAAAACCTACACAATGGGCACAGGGTTTGACGTGAGCATTCCAGACGATGAACTGGGCATCATTCCACGGGCAGTCAGTCACCTTTTCAAAGGTATCGAGCAAAGACGCCAAGCTGCGACTGATCAGGGTCGACCGGTCCCCGAGTTCAAGATCAGCGCCCAGTTCCTGGAGTTGTATAATGAGGAGGTTCTGGATCTCTTTGACTCCACCCGTGATTTGGAGGTCCGGAAGCAGAAGTCTCACATTAAGATCCATGAAGATGCCACTGGGGGCATTTATACTGTGGGAGTGACCACCCGCACTGTCTCTTCAGAGGCTGAGATGATGCAGTGTTTGAAGCTGGGTGCTCTGTCACGTACCACAGCCAGCACACAGATGAACGTGCAGAGCTCACGCTCCCATGCCATCTTTACCATCCACCTGTGCCAAGTACGCGTGTGTACAACCTCGGACAACGAAAACGAGACTGATAACCGGCTGGCTAACGGCTCCTCTGATATGGAGGAGTTTGAGACACTGACAGCGAAGTTTCACTTTGTGGACCTGGCTGGCTCAGAGCGTCTGAAGAGAACAGGAGCCACAGGGGACAGAGCCAAAGAGGGCATCTCTATCAACTGTGGACTGTTGGCATTGGGGAATGTCATCAGTGCCTTAGGAGACAGAAGCAAGCGGACAACGCATGTGCCTTACCGGGACTCCAAACTCACTCGCCTCCTCCAGGATTCTTTAGGAGGCAACAGCCAAACTGTGATGATTGCCTGCACAAGTCCTTCTGATCGGGACTTCATGGAGACCCTGAACACCCTGAAGTATGCTAACCGAGCGCGCAACATTAAGAACAAGGTGGTGGTGAACCAGGACAAGGCCAGTCAGCAGATCAGTGCTCTGAGGACAGAGATAGCCCGGCTGCAGATGGAGCTCATGGAGTACCGCACGGGGAAGCGAATGATTGGAGAGGATGGTATGGAGAGCATTAATGACATGTACCATGAGAACTCCATGCTGCAGACTGAGAACAACAATCTACGCGTGAGAGTTAAAGCCATGCAGGAGACCATCGACGCTCAGCGTGCTCGCCTCACTCAGCTCCTGAGTGACCAGGCCAATCAGGTTCTTGCTAAAGTTGGTGAAGGCAGTGAGGAGATCGGGAAAATGATCCAGAACTACATCAAAGAGATTGAAGACCTAAGAGCCAAACTGCTGGAAAGCGAGGCAGTGAACGAGAACCTGAGGAAGAACCTGTCCAGAGCGACCACTCGCACGTCTTTCTACGGAGGACCTGGAGGTTTTTCTCCTGCCCTGCTCGGACCTGACCCCACCCAAGAGACCTCTGACATCATCGAGCTGGCTAAGAAAGATctggagaaactgaagaggagagagaagaagaaaaagaagagGCTACAGCAGCTGCTTGAGGAGCGGAGagatgaggaggaagaggagatggaggtggaggaAGACAGTGCTGTGAAAGAAGTTCCAGACAATGATCAGGAGAAGGGCAATGAGAGAGAGCAGCCTGAGCCAGCCAATGAGGAAGCAGAGACGGAGGCTCAGGAGGGCAGTGATCATGATGAGggtgaggaggaagaggaggatgatgatgaggaaGAGATGGATGCAGAGGAGAGCTCAGAGGATTCAGATTCTGAACTGGATGAGAAAGAGGACTTCCAGGCTGACCTGGCCAACATCACCTGTGAGATCGCCATCAAGCAGAAGCTGATCGATGAGCTGGAGAACAGCCAGAGGCGTCTGCACACGCTCAAACAGCAGTACGAGCAGAAATTGATGATGCTGCAGAGCAAGATCCGCGACACCCAGCTGGAGAGAGACCGTGTGCTGCACAACATGGgctATATGGAGTCGGGTTCAGAGGACAAGGCCAAGCGAATAAAAGCAGAATATGAGAAGAAACTGAGCGTCATGAATAAAGAGCTGCAGAAGCTACAGGCTGCTCAGAAAGAACACGCCCGTCTGCTCAAGAACCAATCACAGTACGAGAAGCAGCTCAAGAAGCTCCAGCAGGAAGTCACTGAGATGAAGAAAACCAAAGTGCGTCTGATGAAGCAGATGAAGGAGCAGCAGGAGAAGAACCGGATGGCAGAGTCTCGCAGAAACCGAGAGATCGCCACGCTGAAGAAGGACCAGCGCAAACGGGAGCATCAACTGAAATTGCTTGAGGCCCAGAAGAGACAGCAGGAGCTCATACTGCGCAGAAAGACTGAAGAGGTGACCGCTCTGAGGAGGCAGGTTCGACCCATGTCTGGCAAGGTCAACAGGAAGGTCAGCCTGCCTGAGACCCTATCAGACTCCGCCCACCGACCACCCACAGGACGCATACACGGCTCTGGAGCACCCAATGGAACCAGCAGACTGTACCACCGCAGACCTGTGGGGGTGTACTCTACCCGCGTGGCTCGGGTGAAATGGCAGAGTTTGGAGCGCCGCATTTCTGATATCATCATGCAGCGCATGACTATCTCCAACATGGAGGCAGACATGAATCGCCTGCTGAAGCAACGGGAGGATTTGACCCGGCGGAGGGAGAAGCTGAGCAGGAAGAAGGAGAGACTGGCAGCTGAGGGTCCAGAGGGAGAGAAGGCTGTACAGACTCTGAGCGAGGAGCTGGAGTCCCTGTTAGCCAACATTGACTACATTAATGACAGCATCGCTGACTGCCAGGCTAACATCATGCAGATGGAAGAAGCTAAGGAGGAGGGAGAGACTGTGGACGTTTCTGCAGTCATTGGCTCCTGCACTCTTTCAGAGGCTCGATTTCTTTTAGATCACTTCATGACAATGGCCATAAATAAGGGTCTGCAGGCAGCTCAGAAGGAGTCTCAGATTAAGGTGATGGAGGGTCGGCTGAAGCAGACTGAAATCAACAGTGCCACCCAGAACCAGCTGCTCTTCCACATGCTGAAGGAGAAAGCTGAGTTTAACCCAGAGTTGGATGCGCTACTGGGCAATGCTCTTCAAGAGAACGGAGACGACAGTAGCAGTGATGAATCAACAAGTCCTGCAGCAGATGGAAACACCCTGGCCTCTGACCTCATGAAGCTTTGTGGAGAGACCAAGTCTAGGAGTAAGGCTCGCAGAAGAACCACCACTCAAATGGAGCTGCTTTATGCTAACAGCTGTGACTCTGGTCCTGACACACAAAGTGGAGATTTTGCTGGCCCTCTGCACCCCATGGCTGAAACACCTGAAGGGCCCTCAGATCTTGAGTCTGCTGGCAATGCAGTCAGGGACTACATGGTCCCTACAGCTGGCTTTTCCTCTAGAATGGGTAGCATAGGGGTGATAAACCCTGTTCCCGTGTCTAAGAGCAGCCGTGGTGCTACActgcagtgtgtgcatgtggCTGAGGGCCACAGTAaagctgtgctgtgtgtggacTCCACTGATGACCTCCTCTTCACTGGATCCAAAGACCGCACCTGTAAAGTGTGGAATCTGGTGACTGGTCAGGAGATCATGTCTTTGGGTGGCCATCCCAACAACGTGGTGTCAGTACGCTACAGTTCCAGCCTGGTCTTCACCGTCTCCACCTCCTACATCAAAGTCTGGGATATCCGTGATTCAGCCAAGTGCATCCGCACACTCGCCTCTTCTGGTCAGGTGAGCTCTGGTGATGCATGTGCAGCCACAACTAACCGCACAGTCACTATACCAACTGGAGAGAACCAGATCAACCAGATCTCTCTCAACCCAACGGGCACAGTGCTCTATGCAGCTGCTGGAAACTCCGTCCGCATGTGGGACCTCAGAAGGTTTGTCTCTACAGGCAAGCTTACAGGTCACCTTGGACCAGTCATGTGCTTGACTGTTGATCACTCTGGTAATGGCCAAGATTTGGTCATCACTGGTTCCAAAGATCACTACATCAagatGTTTGATGTAACTGAGGGAGCACTAGGCAGCATCAGTCCTACGCATAACTTTGAGCCTCCACACTATGACGGGATTGAGTCGGTTGTGGTGCAGGGAGACTGCCTATTCAGCGGATCCCGAGACAACGGCATCAAAAAATGGGACCTGGCTCATAAAGACCTGCAGCAGCAAGTGCCGAATGCTCACCGGGACTGGGTGTGTGCACTGGGCGTGGTTCCTGGCTCTCCAGCACTGCTAAGCGGCTGCAGAGGAGGAGTGCTCAAACTCtggcacacagacacactgagCGCACTCGGAGAACTGCGGGGCCACGAGAGCCCCATCAACAGCATCTCCACCAACAACAGCTTAGTGTTCACTGCATCTGATGATCGGACAGTGAAGATCTGGCGTGCGAGAGGAGCTCTGGACAGCACTACTGAAATGACGGACATGGCCGACGAGTCTGCCAGCAACTGATTATTCCCTCGGGTCACTGATCCTGACTGTGTTCCTTTGCACTTTGTCCTTAGCCACTAAAACTAGACGCCTAATCAATACAGAGACCCTCAGCAGAAGAATAATACCTGAATTTAAGTGGACGTAAACAGACTGGAATCGACTACTTCACCACGTCTCCTTCTCTCGGGGGTCTCTAAGCCTGTGTCTTAATATTGTGAAGATGTTGTGGAAGGTAGCTGCAACATGCAAGTCTCATTGCAAAATAAAGCTCCCATAGACTCTACATGTTGCAGATTCTCCATGTTGATCCTTATGTTGATTGGATGTCAGATAGGGGAGAAGAAGCCGGACCCTCTGAAGCTGGCTCCAGTAGTCCGGATTCTGTGAGCTCATACGGAAGGCTGTGGATCTGGGCGTTTGACGCTTTATGCATATGATGCATATGTTAATGAACTGTAGTTTTTGCGTAAAGTGGACTAACTGGAATCACCATGCCCTTAAATTTATGTCTGCGTGTTTCAGCTGTAGGGTTGGCACCTGCAAATCACTGCTAACCAAAGCGTAGAACTACAGTTACAGCTACAGTAGATTACAGTCATAACTATGGGTGGGACTCACAGGGCAAATCATGATACGATATCACAATACATCACCCACAATACTGATAATATCAGGATACTCTtattctgtgatactcaatatatttTAAGGCAATTCTCTATGAAACTTCACACCATCTGTATTACTGAGGAGGATAGAATACTCCTGAATAAGCAAATAttaggaattatggatttaattGTGTcaatttcacagaatttgacatccaatattcttcaccacaggttttACCCTATTCGTTTAATTAGCTCTGGCACGTGGAACAGTGGAGCAATGAAaaagtaactttagtaagtcaaatttgGGGAGATGATTATGTATTGCAAATACAATTGGTATAtctcaatatcaatattttgtcccacccctagtcaTAACTAGGTAAGAGTACATACTTTACCACTTCTCTTTACATATAGAATCATCTCCTAATCTCATCTGTCTTTCattcttcttttttactttatctttctctctctacctcccctCTCCCTTCATTTACTCCTCTTCTCGCCCTgccctctctttcttcctctctttcggCTCatctttgacattttttttcctttcactcCCTACTTTCTCTCTTCATGGTTTCCCCATCCCCTATTATTGCATACGTTCTGCTTCTCACTCCCTCCTTACACCTCTTTTTGATTTCTCTTATTCTCCCTGCCCTTGTCTTTGCTTCACCTCTCTcttctgctctttttattttccctctagtttttttctttgtttctcatTTTCCCTCCCATCTCTGCTCTTCCCTTTCCCTCtatcttctctcttttctcattgCTCTCTTCCATCGCCTCTTTGTTTCCACTCATGTTTTTATTCcccctctctcgctttctccctctttcttgtCTTCCTCCATCCTTCCATTCTTCTGCTTTGTTCATTTCCTCCCCATCCATtatctttccttctcttttctgTCCTCTGTTTCTTTACTTCTGTTCTCCTTTTCTGTTCCCAGTTGCTCCCTGCTTTCTCATTCTTTGCTAtattctttctctccatctgttctgttctctttctttcagtccCAGCATCTTTCTGTCAGCATGTTTCACTAGTCAGTCACTCCTCACTCTTGTCAGATCTCagtactctcactctcactcagcTCCTGTGTAAAACGTTCTCGCTGATTGTCTAACACTTATCTTTAAGCTTTACTAGAGCTTTAGCTTTAACGTGTGAGTGAAGTCTTACTAGTAACCAATGCTCCTACTGCTATTTACCTTAATGTGtagatatatgtatatgtggACGTACAGGGGGAAGAGATTATTGTGCCTGTAAGCCTAAACTTCAAGAGTAACGGTGTTCCCGGAcctggtctgtgtgtgtgctaaatGAACATTCtcacctgctgctgtttctgccaTTGTTCTCCCCATTCAGCTCTGACATAATGGACtgttcataaatatataaatatatatagcctTATGTATCACAGTGTAGCTACAGTAAGTTAATGCAGTACCTTGTGTAACGTGAGGTCTTAAAGGAATACTTGACTCCAAAATGCTGAGGCAGCAAACAGACTAACAAACACTGGTCTGTGTTGTTTGGATAAGCTTAACACTAGCCCTCATTAATATCAGCAACATCAGGCttttagggatgcactgattatttggcaaactaaaaaaaaaaaaaaaacataatgggtAAAATAACTGGATCATTAATACCAAACATTGACTAATTATTTTATCTAGTCATGTTTCAGCATTTCAGCAATGGTTTCAGGAGCCGGTAAATTGCCAAAAAATGGTGGTaggtttaagtttgttttttatgCTGTACTCACATAAATCTAACTAAATAAAGCATTCAgctttacttattattatttttagtgtaaGTTTACAACCTCTTCACAAACCTGCTGTTTCCCTGCTACAACagacaagctgtacagggctagctaagtgagctaacttagccttagcatttgtttaACTAGTTAGCCGgactttctctgtgtaaatttaaCTCACATGTGACTTGGGTTAAGTAGTTAGCACTGCTAACATAATGTATGACTAAATCACACTGCttacatatatttaaagttaaagtagCATGACTGGGGTATTTTATGAACAAAGTTGCACTGCTAAggtagctaagttagctagctaaatgtgtaGCTAAAATGCTAGCACCGcttaaaatgtgttaatgaTTAGGAAAGCACAGCTGTGGTAGCTAATGTAGTTAACTATAgtgctttgttggtttgtcttGCTAGGATAATCAAATcttaaaggttaaataaataatttttaattgtagatttgttttgtttttgttattttttgctaAAAGTGAGACAAATACAATTCAATTGAATTATTAATACAAATCTCTTTAGTATTTAGCCTCCTGCTAAATCTTTTTAGCCAAAATCATATTTGTGCATCCCTAGAGCCCTTGGCTGAAGTGTAGCTTTATCCTCAACTGACAAAGCTGGCTGCTCGTGGCCTCAGCTCAGAAGCAGTAGACCAGGATTTGGGAATGCTGTTTTAGGCTGATCAGAAATGGCATTTGCAACAGTAGGATTGATCTCAGTTTAAGCTTCTTCTCTCCCCATGTGGGCTTCTCCTGTGTAGTTGCTCTGTCTTATTCTGGACACATTTAAACCAGACGAATTTATGAAGTCCTGGATTTTCACTGCAGTTTTAGCTGGCTGACCCCCTTAGCGATTTGAATGTCAGATGCCACTTGAATTAAATGCCATCTGTCAAAAACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99475 lncRNA downstream 38704 15188594 ~ 15189335 (-) True G73760
TU99459 lncRNA downstream 102532 15123880 ~ 15125507 (-) False LOC103037068
XR_002650245.1 lncRNA downstream 116675 15085780 ~ 15111364 (-) False LOC103036159
XR_002650247.1 lncRNA upstream 23926 15314637 ~ 15318087 (-) True LOC111193098
TU99585 lncRNA upstream 95968 15386679 ~ 15414613 (-) False LOC103040324
TU99596 lncRNA upstream 139436 15430147 ~ 15431307 (-) True G73862
TU99607 lncRNA upstream 157963 15448674 ~ 15528462 (-) True G73870
TU99603 lncRNA upstream 158793 15449504 ~ 15453826 (-) True G73869
XM_022672181.1 mRNA downstream 13755 15123814 ~ 15214284 (-) False LOC103037068
XM_007228204.3 mRNA downstream 14716 15123814 ~ 15213323 (-) True LOC103037068
XM_022672180.1 mRNA downstream 153270 15001175 ~ 15074769 (-) False LOC103035545
XM_022672179.1 mRNA downstream 153270 15001175 ~ 15074769 (-) True LOC103035545
XM_007228201.3 mRNA downstream 260738 14964498 ~ 14967301 (-) True irx3
XM_007228217.3 mRNA upstream 90618 15381329 ~ 15395141 (-) False LOC103040324
XM_007228216.3 mRNA upstream 90618 15381329 ~ 15395137 (-) True LOC103040324
XM_007228222.3 mRNA upstream 140762 15431473 ~ 15434025 (-) True fibin
XM_022672187.1 mRNA upstream 169976 15460687 ~ 15543780 (-) True ano3
XM_007228223.3 mRNA upstream 273260 15563971 ~ 15571540 (-) False LOC103042382
TU99163 other downstream 682601 14542209 ~ 14545438 (-) False LOC103025073
TU98709 other downstream 2606683 12610834 ~ 12621356 (-) True G73172
TU98667 other downstream 2663073 12564348 ~ 12564966 (-) False fbxo31
TU98668 other downstream 2663165 12564348 ~ 12564874 (-) False fbxo31
TU98666 other downstream 2663241 12564348 ~ 12564798 (-) False fbxo31
XR_002650248.1 other upstream 471053 15761764 ~ 15778423 (-) False LOC103046265
TU100463 other upstream 2586315 17877026 ~ 17883786 (-) False nrg4
TU100498 other upstream 2692036 17982747 ~ 18029747 (-) True G74591
TU100745 other upstream 3648463 18939174 ~ 18940464 (-) True G74791
TU100809 other upstream 3780227 19070938 ~ 19072888 (-) True G74838

Expression Profile