RNA id: XM_007228225.3


Basic Information

Item Value
RNA id XM_007228225.3
length 1538
RNA type mRNA
GC content 0.50
exon number 4
gene id LOC103042382
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 15563971 ~ 15571540 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tccagaaaaaaacagagacagagagagagagagaaaggcggAGAATAAGCAGCAGAGCTGCGTGTGTGGTTAATAAAGGTGTAACGTTACCGGAATTATCTGGACTGTTTCTACTAATGCAGGCGtaattcatcatcatcagcatttACGCTTCTACAGTCGTCTTTCTCTGCGCCTCTGAATTCTGTTGCTGTGGAGTTTTCCCACTTTCTGTCTGAGACAGTGTCCAAGCGAAGAACCTATGGATATTATCCGGTGTCTGCGGTCTTTACTGGACCTCCATGTTCAGCTCCAAAAAGCTGTAGCTCTTCAGGGAGATATCCAGGCCCAGTTTCTTGCTCACCTTTTACAACCAGACAGTTCTGACCTGCCTCAGCTGCCCCGGCCATGTCTGGACGTGAGAGGAGATGATCTGGAGCTCTCTCTGTCCGTATTTGAAAGAGCTCTGGACAGCAGCAAACTGCCGAAGGAGCAGTGGGGCTCTCGGCTAGCACAGCTCCTGTGCGTGAAGACACTGCGTGAAGAGGGACATGATCCATCCAGTCTGCTCAATTATGAAGTTTTGAAAGCAGATGTGAGGAAGCAGGCATGGGCCTCGGAGCTTCAGAAGTGGAGGGACTTTAGTGAAGTCCAGTATGATCCCCACAAGAGTCTGCGGGACCTAAAGCTTCAGGTGGAGGAGGCAGCCAAAACGTGGCTCCAGCCTGAAAGGTGCAGCTCTGAGGAGGTGGTGAGAAGAGTGAGCCTTCAGAAGTTCCTTTCTCTGCTCCCGCCAGGTGCACAGGAAAAAACACGAAAACAACAGCCACAGAACTTGGAGGAGGCTTTGATCATGGCTGCATGCTTTATGGAAGATAACAGGGTTGAACAAGAAGaaccagagagagacagacaagtCTGCGAAACACAGACCGAGACTGGTCATGGATACTCAGGGGAGCATCAACCAGTCAGCTTTAATGAGCTGTGTCTGAAACAGGATACAGAAACCATCTTCCATCCAGTTGGTTTCAGCCTGGAAGTCAGTGGTGGGAATGAGCATTATCAAGAGGAGCAGTTTTCTGAAGCTGTGTTTAACCCTATGCTCGTAGACACCAAGCCTGTTCTGAATCTTGAAGTTGTACATCCAATCGTTAATGACTCTAATGAAATGTCACTTCCTGGTACCTGTTACGGTAACAAATCAACTACGCCTTCACTCAGGTCAGCCTATAAGAACTGTGACAGACAAGTCCAGCACCACAAGCCAGAAGCGCCAGTGAAACATGCGTTAGAGTGTCCCACATGTGGTAGTAAGTTTAAGAGGTTTGACTACCTGCAGAGACACAGGTGCACTCCTGGACAGAGCCTGGGCTGTAAGCACTGTGATCTCCGCTTCCCTACACTCACCCAGCTGACCAACCACCTCCGCATCCACCGGAAAATGCTGCGCTGCCCTGTATGCAACAAAACCTTCCGCGACCGCTTCAATCTCCGCTGCCatcaacgcacacacacagTGATCTAAACCcagctgagatggtgatttgggatgagct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99607 lncRNA downstream 37920 15448674 ~ 15528462 (-) True G73870
TU99604 lncRNA downstream 111772 15449504 ~ 15454610 (-) False G73869
TU99603 lncRNA downstream 112556 15449504 ~ 15453826 (-) True G73869
TU99596 lncRNA downstream 135075 15430147 ~ 15431307 (-) True G73862
TU99585 lncRNA downstream 151769 15386679 ~ 15414613 (-) False LOC103040324
TU99622 lncRNA upstream 794 15572334 ~ 15577498 (-) True G73877
TU99658 lncRNA upstream 72281 15643821 ~ 15644252 (-) True G73910
TU99834 lncRNA upstream 281762 15853302 ~ 15953813 (-) True LOC111193099
XR_002650249.1 lncRNA upstream 355944 15927484 ~ 15952104 (-) False LOC111193099
TU99883 lncRNA upstream 532076 16103616 ~ 16108725 (-) True G74091
XM_022672187.1 mRNA downstream 22602 15460687 ~ 15543780 (-) True ano3
XM_007228222.3 mRNA downstream 132357 15431473 ~ 15434025 (-) True fibin
XM_007228217.3 mRNA downstream 171241 15381329 ~ 15395141 (-) False LOC103040324
XM_007228216.3 mRNA downstream 171245 15381329 ~ 15395137 (-) True LOC103040324
XM_022672183.1 mRNA downstream 275671 15228039 ~ 15290711 (-) False LOC103038669
XM_007228227.3 mRNA upstream 9496 15581036 ~ 15621857 (-) True gas2
XM_022672191.1 mRNA upstream 9496 15581036 ~ 15613016 (-) False gas2
XM_022671919.1 mRNA upstream 50441 15621981 ~ 15624917 (-) True LOC111193057
XM_022672189.1 mRNA upstream 73539 15645079 ~ 15660833 (-) True slc17a6
XM_007228306.3 mRNA upstream 90462 15662002 ~ 15663287 (-) True LOC103041761
TU99163 other downstream 1020944 14542209 ~ 14545438 (-) False LOC103025073
TU98709 other downstream 2945026 12610834 ~ 12621356 (-) True G73172
TU98667 other downstream 3001416 12564348 ~ 12564966 (-) False fbxo31
TU98668 other downstream 3001508 12564348 ~ 12564874 (-) False fbxo31
TU98666 other downstream 3001584 12564348 ~ 12564798 (-) False fbxo31
XR_002650248.1 other upstream 190224 15761764 ~ 15778423 (-) False LOC103046265
TU100463 other upstream 2305486 17877026 ~ 17883786 (-) False nrg4
TU100498 other upstream 2411207 17982747 ~ 18029747 (-) True G74591
TU100745 other upstream 3367634 18939174 ~ 18940464 (-) True G74791
TU100809 other upstream 3499398 19070938 ~ 19072888 (-) True G74838

Expression Profile