RNA id: XM_022672191.1


Basic Information

Item Value
RNA id XM_022672191.1
length 2855
RNA type mRNA
GC content 0.41
exon number 8
gene id gas2
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 15581036 ~ 15621857 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAGTACAGCCAGTGGCTGGCCAGCAGACATGAGGCCAGCTTACTGCCTATGAAGGAGGACCTGGCGCTTTGGCTCACTAGCATGCTGGGTGTGGAGATCACAGCAGACAGCTTCATGGACAGGCTAGATAATGGTTTCCTGTTATGTCAGCTGGCTGAGACACTGCAGGAGAAATTCAGGCAAAGCAACGGGGAATTGTCGCCACCGGGCAAGccaaTCCCCAATCGGAGGATCCCATGTAGGGCAAGTGCTCCCTCCGGCTCTTTCTTTGCCCGGGATAACACTGCTAACTTCCTGTCATGGTGTCGAGAGGTGGGCGTTGGAGAAACCTGCTTGTTTGAATCTGAGGGGTTGGCTGAAGGCATGCGAGGAGATGACAGGAAATTCAGTTTTGCACAAACAGCCACGTGAGGTCTGCCTCTGTCTCTTGGAGCTGGGGAGGATAGCATCCAGGTTTAAGGTGGAGCCACCTGGGTTAATTAAGCTGGAGAAAGAGATTGAGCAGGAGGAGAAAGCTCCTGAGCCCCCTCCCTCCCCCGTCTCTCCTACCCAGGTTTCTTCCCCCAACAAATGCTCCTCCTGCAAGAAAAGCACTGGCAAGCTTCTGGATGATGCTGTAAAGCACATTGCTGAAGATCCTCCATGTAAATGTCCAAACAAGTTCTGCGTGGAGCGTCAGTCACAGGGCCGCTATCGTGTCGGGGAGAAGATACTCTTTATTCGGATGCTGCACAATAAGCACGTGATGGTGCGTGTGGGTGGAGGCTGGGAGACCTTTGAGAGCTACCTGCTGAAGCATGACCCGTGCCGTATGCTCCAGATCTCAAGGGTGGAGGGCAAGATCTCACCCATCTCCAACAAATCCCCCAGCATTAAAGACCTCACCCCCGATAGCTACCTGGTGGTAGCGGCACACTACAAAAGCAAGAAGTAAAGGGCAAAGGCAAAAGTGAAGACTATTTGATCAGGTGGACCTCCTCTCTGTAATGTATTTCACTGACATAcactcatcattaaaaaaaaagttgcacccagaaggaattaTTGGATTTTAATGCTATTCGGaagaaagatgaaaaaaaaaattatgattaaaaaagcaTTCAGAAGTAGTGGTGCATGTCTAGATAGACATATCAACATGGAGTTGTAGAATGTAGTATCagttagggctgcacgatactggaaacattttacattgaaaatgttcttttttgacaatatatatcatgatattaaacaaGGCAGGGCCAATGACGTCACCACCCCCACCCGCGCGCTGTCTCGCGTCCGGTTCGATCAAGTGCTGAGTCAGtgccgagcactcaaaaccagaggaaaacagcaaaacaacagtaatcggccctttaatcaggcttcttaaaaaaaaaaaaaaataaagtaaataagagCGTGTTTCTGGGATTAATAActtgaattcagctgtaactggaaatagctgtgcaaaactgttctggactgaggtgcacagctttcagcatgtgcgtttacaagcacttgcccaaccatgtggatggaggccatgcggttacctcgtaaCAGTAACTCAGTGACAGTCTGTTTCATTTCTGTTGTTtgatttattcacatttttttgatgatgagtgtatcaAACACAGCTGTTACCATGTCTTAAGAAACTTGAGAAGCAAtgtttctctgtttgtgtgtaattttacCAAAGAGCAAGACCCTCATCCTCAGAATATGGCCTTCCTCTGTGCATAGCTGGTGGTAGACATGATTTCTTGACTAGTCAAACAcaatctgtctttttttttattttttagatttttacttGCATTTGTGTATAAATACACAACATAGATTGTTATTATGGTTAGTGATAGCTtctagactgatttagatcattCGTCATATTGCATCCAAGCACAGAGGCTCTGAACTACAATACGTCTGATATTAAGAGCACTTTCACACCTGTAGCCTGAATCAGTTAAAGCAGTTATAAACTTAAAGTGCACCAAAATGCATGACAACAGACCATGTGAGTATTTtctctctgcttattggtcaAACCTAAAGTATCTGATTACTGTATCCACATTTGTtcccggaaaaaaaaaatcacaccagCAAACCATTTTGTTTTATCCAGACTAAACAaatgtgcaggtgtgaaaatgcactTAGAGAAGAGACTGGAATTCAAAAGTTTAAGATCGTTTCAGACTGTTTTagatatttgcattttattttcacATCTCAGAATACTATGCAATGATTTGTTGACGATCACTTCTAAACTGGTATAAACTGATATATTTAGTCTAgattatggtgtttttttttgttattattctaCTTGTCTATCAgcttgttttagtttgtttagctGAAATGTCTGTATAACTAATGCTTGAAGTTTGTCATCTCATCATGTTTTTGAATTCAGAACTGATTTGGTTCATTTCTTAATATCTCCCTTGATGGGTGtacatacatttacagtaaTTCCTGCATATTTAGCAATATCCATGatactgtttttatatattattaagggTATTATGAAGTCATAATATCAATACTATGCAATTTGTATTTTCTGGCAGTTGCTTATTTCCTAGCAGATGATTTTCTTATTTAGCTTGTACtgttttgtttgattatttgtaacatttgtaTAAGAAAGGAATGATGATGTAAAGTAAtgaccactctctctctctaattgcAAGGATAATCAAATATACAGTGTATGCTTTAAATAGAATTTAGCGTGTGCCTGATTTGGGGTAAATGTGTTAACTTAAACTTTTCTGTTCTCTGTATAATAAGGCCTGAGAATAAACGTTGGGAACTGATCTGAA

Function

GO:

id name namespace
GO:0007050 cell cycle arrest biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99622 lncRNA downstream 3538 15572334 ~ 15577498 (-) True G73877
TU99607 lncRNA downstream 52574 15448674 ~ 15528462 (-) True G73870
TU99604 lncRNA downstream 126426 15449504 ~ 15454610 (-) False G73869
TU99603 lncRNA downstream 127210 15449504 ~ 15453826 (-) True G73869
TU99596 lncRNA downstream 149729 15430147 ~ 15431307 (-) True G73862
TU99658 lncRNA upstream 30805 15643821 ~ 15644252 (-) True G73910
TU99834 lncRNA upstream 240286 15853302 ~ 15953813 (-) True LOC111193099
XR_002650249.1 lncRNA upstream 314468 15927484 ~ 15952104 (-) False LOC111193099
TU99883 lncRNA upstream 490600 16103616 ~ 16108725 (-) True G74091
TU100007 lncRNA upstream 589508 16202524 ~ 16215525 (-) True G74199
XM_007228223.3 mRNA downstream 9496 15563971 ~ 15571540 (-) False LOC103042382
XM_007228225.3 mRNA downstream 9496 15566382 ~ 15571540 (-) False LOC103042382
XM_022672190.1 mRNA downstream 9505 15563971 ~ 15571531 (-) True LOC103042382
XM_022672187.1 mRNA downstream 37256 15460687 ~ 15543780 (-) True ano3
XM_007228222.3 mRNA downstream 147011 15431473 ~ 15434025 (-) True fibin
XM_022671919.1 mRNA upstream 8965 15621981 ~ 15624917 (-) True LOC111193057
XM_022672189.1 mRNA upstream 32063 15645079 ~ 15660833 (-) True slc17a6
XM_007228306.3 mRNA upstream 48986 15662002 ~ 15663287 (-) True LOC103041761
XM_022672188.1 mRNA upstream 53333 15666349 ~ 15710606 (-) True ano5
XM_007228231.3 mRNA upstream 53333 15666349 ~ 15710605 (-) False ano5
TU99163 other downstream 1035598 14542209 ~ 14545438 (-) False LOC103025073
TU98709 other downstream 2959680 12610834 ~ 12621356 (-) True G73172
TU98667 other downstream 3016070 12564348 ~ 12564966 (-) False fbxo31
TU98668 other downstream 3016162 12564348 ~ 12564874 (-) False fbxo31
TU98666 other downstream 3016238 12564348 ~ 12564798 (-) False fbxo31
XR_002650248.1 other upstream 148748 15761764 ~ 15778423 (-) False LOC103046265
TU100463 other upstream 2264010 17877026 ~ 17883786 (-) False nrg4
TU100498 other upstream 2369731 17982747 ~ 18029747 (-) True G74591
TU100745 other upstream 3326158 18939174 ~ 18940464 (-) True G74791
TU100809 other upstream 3457922 19070938 ~ 19072888 (-) True G74838

Expression Profile