RNA id: XM_007228231.3


Basic Information

Item Value
RNA id XM_007228231.3
length 5053
RNA type mRNA
GC content 0.43
exon number 20
gene id ano5
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 15666349 ~ 15710606 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACTGAGACCACTCTGCGCTCTGCTGAAGCTGCGCGAGGCGGGGGCAGCGGAGTGAGCTCGCGCGCGCGCGCGGAGGAATCTGGGGCGGAGGCTGGACCGAGGACTCTCTGAGTAGAAAACAGCGGGTTTATAGCGGCGATTTTTTCCGTTTTGAGCGGCTTATGAGACTTTACCAAGATGACTCGGGGGTCGGGAAAGTCGAAAGAAGAGACGCTGATTGAGATGAATGAGGCCGGTTCTCCAAACGGCGAGGAGAACAATGGCTTCCATTCTAGTGCCAACGCTGGGGTATTTCAGCTAGACGATGCCACggtggatAAACAACATCAGAGTAAGGACTCTGTGTACTTCAGAGATGGGAAACGACGGATTGATTTTGTTCTGTCGTACATTGAAGATAAAGAAGACAGAAAGCAGGAAAGAAGAAAACTCTATGAGGAGAACATGCAGAAAGCAGGGCTGGAACTGGAGCTTGAGGACAAAACGGAGTCTGAGGATGGAAAGACTTACTTTCTGAAGATCCACGCACCATGGGAGGTGCTGGCCACCTACGCTGATgtgctgaaaattaaagtgCCTTTCAAAGTCAACGATATCCCAGAAAACCGAGAGATTCCAGTTAGCTGGCTCTTCACACCATTACTCCTGCCTGATCATGTGATGCGTCCTGACCCAGACTACTTCACATCACCTTTTGACAAGAGCAAGGATGACTTCTTCCTCATTGATGATAAGGAGACCCTTTTCCCCCCGTCCACACGCAATAGGATAGTGTACTATATACTCTCCCGCTGTTTCTACAACAGAGATGACAATATCAACAAGGATAAGAGAGGCATAAAGAGGCTGCTGAACAATGGAACTTACACTTCAGCCTTCCCACTGCATGATtgcAGGTACTGGACAAAGTCTCGAGACACTCACTGTGAGAGTGAGCGGTATAGCCTGTACCGATACTGGGCTCGCTTCTTCCGCTTTTACAAGGAGCAGCCCCTCAACCTCATTCGGAAATACTATGGAGAGAAGATAGGGATCTATTTTGCCTGGCTTGGATTTTACACTGAGATGCTGTTCTATGCTGCGTTGGTGGGACTCATCTGTTTCATCTATGGAGCTGCTACGTACGATGACGTAATTTGGACCAAAGAGATCTGTGATGACGACATTGGGGGGCAGATTGTCATGTGTCCTCTCTGTGACAAGAAATGTGGCTTCTGGAAACTCAACagtacctgtaactctacctggCAATCGCATTTGTTCGACAACACGGCAACAGtattttttgccatatttatgGGTATATGGGTGACTCTTTTCCTGGAGTTCTGGAAGCGGAGGCAGGCCAGGCTGGAGTACGAGTGGGATCTTGTGGACTTTGAAGAAGAACAACAGCAGCTGCAGCTCAGGCCTGAGTACGAGACCAAGTGCACCAGCCGCCGCCGTAACAAAGTCACACAGGAGATGGAGCCTTACTTCCCTGTAACTAGCAAGTGTGCTCGCGCCTGCCTGTCTGGGGCCACTGTCTTGTTCTGGATCTCTCTGATCATAGCCAGTATCATTGGAGTGATAGCATATCGGCTTGCTGTGTTTGCTGCATTGGCCAGCGTCATGAAGGACAGCCCCACCAATAAGATGGAGCTGGTGGGCTCACTAATAACCCCACAGCTTGCCACCTCTGTGACTGCCTCCTGTATTAACTTCGTCATCATCATGATTCTTAACTTTTTCTATGAGCGCGTTGCCATCTGGATCACAGATATGGAGGTCCCTAAAACTCATCTGGAGTATGAAAACAAGCTGACCATCAAGATGTTCCTCTTTCAGTTTGTAAACTACTACTCCTCCTGTTTCTACGTGGCCTTCTTTAAGGGAAAGTTTGTGGGCTACCCCGGAAAGTACACATACATGTTTAATGGGAGCGGGCTTAGGAATGAAGAGTGTGACCCTGGTGGCTGCCTGATTGAGTTGACCACTCAGCTGGTGATTGTCATGACTGGTAAACAAGTTTGGGGTAACATCCAAGAAGCTCTGCTTCCCTGGCTGAAGAACTGGTGGAGCAGTAGGAAGGCTCGTAGTCACCCTGAGAGTCTGTACAGTCGTTGGGAGCAGGACTATGACCTGCAGAACTTCAGCCAGTTTGGTCTTTTCTACGAGTACCTTGAGATGGTAATCCAGTTTGGTTTTATCACACTCTTTGTGGCCTCCTTTCCACTGGCTCCTCTTTTGGCCTTGATGAATAATATTCTGGAGGTGCGTGTGGATGCGTGGAAGTTGACTACTCAGTTCCGTAGACCTGTAGCAGCGAAAGCCCACAGTATTGGAGCCTGGGATGAAATTCTCAACATGATTGCTGTCTTCTCTGTTGTCACCAATGCTTTCATCGTGGCGTTTACCTCAGATATGATTCCTCGGCTTGTGTATCTATACGCATATCACCCTGGAACTGAGCTCACCATGCAGGGCTACGTCAACAACAGCCTATCCATCTTCAACATCTCACAGCTGCACAGCGATAATACACCTGATCCTGGTGAAAATCCTGCCTGGTTTAACAATTCTGTAATTACAACCTGCAGGTACCGTGATTACCGCTATCCTCCTGGCCATGAGTATGAGTACTCTCACACCATGCAGTTCTGGCACATCCTGGCTGCCAAAATGgcatttattatcattatggAGCACGTGGTGTTTGTAGTGAAGTTCTTAGTGGCATGGCTGATCCCAGATGTACCGTCAGACGTGCAGGCTCGTGTAAAGCGTGAGCGATACCTGGTGCAGGAGTACTTGCACAACTATGAAGTGGACAAGCTGAAAAAGCAGCTGAATGAGATGGGAGGAGGAGAGTGCATCTGTCCAACAGTAGCTCAGCCTTTAAAACATGAGGTTGTATCTGAATGCCTGACCTAatctcagctttctgttcttatgTGAAAATGAAAGCGGCTCCTATCAGGCACTTCCCTGACCTCAAACCCCAGACACTGACTGTTCTTGCCATTCTACTCATAAGCAGAGTGAAAATACTGATCTTGGATCTGCTCCTTTCCGCCCAAACACATACTCATTTAGACATGAAGGTAAAAGTACTTTAGCTCTTTTACTTTGAGACGTCTGATGCAAAAGGCCAAATGTGGcttcttttattattgaacTGTGGTTTagaaacttttttatttcttttttttattatgtgttgTTTATTATCTCTTATTCAgatttaagattatttttatCAAACCCATTATGCAGCCAAAGACAAGATGCCTTATTTCTATATATCTATAGCTTGTATTACTCTCTTCAAGGCAAAAATGTGAGTCGTTATATCAGCACAGATGCCTGTTCATTTCAGTGAAGTTCAACCTTTCAGATAAGAAGTTCAGGGGAAACttcagtttatatttatttctgtatgaagacattttacataaatagattttaaatgcatttaaaatcatAGACAGTTTAACTTAAATACCTCTATAAGCTCTTGATTAACTatcagtaaaatgtaaaacagtaTTTTCACAATCAGGACACTGTACAGTGCACAGTTCACTCATCACTACAAAGTGCCCTTTTCATAGCATGCAGCTGCACAAGGTTGTTGCAAGGAGCTTTTCTTTTATTCCTGTGAAATATACCGTACCTCTATGCAAAATAAGAGCAAGTGCACCACATTTCTCAAGTACATTCTGTCTGCCACCAGGTGATGTCACTAGTGCATTCACACTCTTATTTAAAGAACAGACACCTCAGCCGATGGTGGTTGCAAGCAATCAGCACCTCGAACCCTGTGAACCAAATCCAGCCAAAACTTACTGTTTAAAGCCAAAGTGTAAAGAGTGTAAAGAGTAAATAGCGTTTAATGCAGGACTGAAAGAGGAGTCTAGGCACACTAATGGCTTTTAATGTGCCTTTATTTATCTTCACATTTATTACAGAGGAGTAAAGTCCAGCTGTAGTCATGGGAACTCTGTGAGTGTCTCTTTTGttcgtttgttttttcttttcattttctgttctttttacaGGTCAGGGGACATAAATGAGATTGTGTAATGTTGTTGTCTTGCACAAAGCACTTAATGAAGAAGGGGTTTGTCAGTGTGATTAATGTATTTACACTACAGTATCAGTGTTTTAATGAAATGCCTGAAATCAAGACGGCAGGCCAACCGTCCAGGTCTGCTGTGGATAGAAGAGATTAGTTGATGTAAAACTTTGTAAAGCATCACAGTACAGTAAAATGGATGTAATTTTAGCATTGGGTAGCATTTGGGcccatgcatacatacatacatacagaaacATATGCTGTGCTTAAGTTCCTTTTATCCTGAAGCAAATCATTGTTAATTTGTTCCCCTTTACATGCATGTAAGTGTTCCACCCTCTCTCCCTGTGTATGTCTGTCAAATGTCCTACAGAACATATGTAAACAACACTGGTATCACAACACAAATAAAGCCACTCAAGTTTATCTAGATAAGTAATTGGTTTTCAATGTTTACAGTAAATGCCACACTctggttttgtttatatttgtgaCTTGAATTCTAAAGACTTTTTGTTCAGATTGTTCAGTTTGTTTAGGAATTATGACATAAAATGATAGGATAAATCATGAAAAAATCTTGTTTATGTttgccatttgtttttttttgtttttttttttctaattttctatgCACATTTCTCAAAATGCCTAAAATGCTACAGATCATATATACTAAGATTTCTATGCATTTGTTAGAGGTGAAATGCAAAAAATCATGGTTGTGTTTCATTGTGCACTTCTGCCTGTATGCTGGTATGTTCTGCTGTTTTGGCCCTTTACATAGATACTGTAATTCCAGATTGGACTTTATCTGTATAGACAATCAACAACCTTTGCGCCAAAATCATTTGTCTTTTGTTACTGatcatctctgttttaaaacaccATTATTGATTTTGTAATGCTGTAGCAAGTTGCCAAGTTACTAAGTTATCATTGGATCTGAAATCATaaatgaatataattttaaataaatgaaaaatctaT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99658 lncRNA downstream 22097 15643821 ~ 15644252 (-) True G73910
TU99622 lncRNA downstream 88851 15572334 ~ 15577498 (-) True G73877
TU99607 lncRNA downstream 137887 15448674 ~ 15528462 (-) True G73870
TU99834 lncRNA upstream 142697 15853302 ~ 15953813 (-) True LOC111193099
XR_002650249.1 lncRNA upstream 216879 15927484 ~ 15952104 (-) False LOC111193099
TU99883 lncRNA upstream 393011 16103616 ~ 16108725 (-) True G74091
TU100007 lncRNA upstream 491919 16202524 ~ 16215525 (-) True G74199
TU100011 lncRNA upstream 508491 16219096 ~ 16222273 (-) True G74202
XM_007228306.3 mRNA downstream 3062 15662002 ~ 15663287 (-) True LOC103041761
XM_022672189.1 mRNA downstream 5516 15645079 ~ 15660833 (-) True slc17a6
XM_022671919.1 mRNA downstream 41432 15621981 ~ 15624917 (-) True LOC111193057
XM_007228227.3 mRNA downstream 44492 15581036 ~ 15621857 (-) True gas2
XM_007228238.3 mRNA upstream 47698 15758303 ~ 15780678 (-) False LOC103046265
XM_007228237.3 mRNA upstream 47698 15758303 ~ 15778415 (-) True LOC103046265
XM_007228244.3 mRNA upstream 129081 15839686 ~ 15856661 (-) True ccdc33
XM_007228247.3 mRNA upstream 269376 15979981 ~ 15984118 (-) True islr2
XM_007228248.3 mRNA upstream 303760 16014365 ~ 16026901 (-) True sema7a
TU99163 other downstream 1120911 14542209 ~ 14545438 (-) False LOC103025073
TU98709 other downstream 3044993 12610834 ~ 12621356 (-) True G73172
TU98667 other downstream 3101383 12564348 ~ 12564966 (-) False fbxo31
TU98668 other downstream 3101475 12564348 ~ 12564874 (-) False fbxo31
TU98666 other downstream 3101551 12564348 ~ 12564798 (-) False fbxo31
XR_002650248.1 other upstream 51159 15761764 ~ 15778423 (-) False LOC103046265
TU100463 other upstream 2166421 17877026 ~ 17883786 (-) False nrg4
TU100498 other upstream 2272142 17982747 ~ 18029747 (-) True G74591
TU100745 other upstream 3228569 18939174 ~ 18940464 (-) True G74791
TU100809 other upstream 3360333 19070938 ~ 19072888 (-) True G74838

Expression Profile