RNA id: XM_007228236.3


Basic Information

Item Value
RNA id XM_007228236.3
length 2132
RNA type mRNA
GC content 0.43
exon number 10
gene id sigirr
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 15739562 ~ 15755106 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GATTCAggtgcttctgctgctcttcgtgtgtgtgtggggtcagTTCACAGTGGTGATCAGAGCAGGCTTCTTTTCACTTTGAGTGGGAATGCATGAAATCACCAGGATCATATGAACTTCAGCAGAGTCTCTTTGTGGCGTGGCTCCACAGTTTAAACCCAGCGCAGTTTGGACTGACATTTGGGAGCCACTGGGCTCCAGGGTTGAACTGAACTGCACAGCACTTATGGTTTACAATATGAGTGAATATAGCTGTGTGCCCGATCTGCAGTGGACGAAAGATGGACAACCTCTCACCAACCTTAGTGCCCTCACCCAGAACATGTCTTGGATAGCTGATGACTACCATCATGGTCTGAGCAGTATTCTGACTCTGAGCTTGAAGACACAGAACGACTTTGGTCTCTACCGCTGTAAAATATGGAACAGCACAGTCACCTTTAACATCCAGAGCACCACTTTCCCCAGTCACACAGGGGCAGTGGTGGCATCTGTGATCTTGCTTCTTTCATTAGCCCTGGCTGCCTTAATCTATTCCAAGTGCCACCTGAACTTCAGACTCTGGTATAAAAACAGATACGGAGACTATGAAATCGACGATGGCAAAATGTACGATGCCTACATCTCATACATAAACAGTGAGAATGACCGgaaatttgtaaattttatCCTGAAACCTCACCTGGAGAATAAGTATGGTCACAAATTACTGCTTAACGACACAGACATCCTCCCTGGAGCAGAGCCATCTGCAGAGATGCTAATGGACAGTAGTCGATGCCGGAGGCTCATTGTGGTTCTGTCACAGCCCTACCTGGAACAGGAATGGTGCACCACCAACTTCAAACAGGGCTTATTCCATCTGCTGGAGCTTTCTAGGAAGcccatcttcatcatcttccAGTCTCAGCAGAAGCATGTAAGTGTGGACAttatccagcagctccgagAGCACCAGGCACGCATCACCACTCTGATCTGGGGAGCACACTCTATGACCCCATCATCTGGGTTTTGGAAAGAGCTGGCTTTAGCTATGCCACGTAAGGTGGTTTTCCACACCAAGTCTTCTGGAGATCCTCAGACTTTGCTTCAAGATGATAAAGACCCTATGCTCACCCTACAGCCTGATTATCTGGACTGTAGACCAGACCCAGACCCTGCTGGAGACCTGGGATTGCGGTTGCCTATCTACAAATCTCTACCATCCAAAGCTCCAGTACTTCCTGCAGCCCCTGATCCAGCAACTGAAACCAAACCTCCAGAGATAGACGTGCCTGACTTGGGTTTGAGGAACTACGCTGCCAGAACCGATTTTTACTGCCTGGTCACAGAGGATGATATATAAGCCTCAGTCACACATTTCTATTTTCTTATTTCACTCCGTTTGCTCCAGGGATGAATGAAAGTTCTTAATCATTTCATGAGTCATTTTTCCTTTGTATTTTCTGTAAGGGTTCATGTGTTCAGAATACCAGCTTTTGGCCCAGCAGAGAAACATATACTTATTGTATCAAAATAATGCACCAGAATCTAATGTAGCTTATTGTTTGTAAATGTAATGATGTCATATATATACAATTGCGATATTAAAGTGAAAAGATATGTTTATTGGATGGAGGCTCTAGCAGCATTTTAGGCCTGGAGACAAGATGAGTTTGCAATCATAACTGCATGCCTTATTTTATGGCAATCCACGGTGcatcattattttttgtcaataagtataaattcattattaagttTATGATGGCTCAAGCTTAGCGTTATTTTTCAGATCACACCACATCCATATATTCCCCAATGATCAGAATTGTATTACTTTGTTATTTTGAATGTTTCTGAGAGTTCTGTATTTGAAGCCATTCTGCTTATTGACAGAATAATGTTAAAATGGAGGGCTACATTCTGCATGGCTCttgaatgtttttgtattttgaccAGTTGTAAACTGAGCAATATTTTAATAACTTCCTTGCCCTCAGTCTGCATATTCTTGCATCACATACAAATTATACAGTCTGAAAGCACAGAAGTGCACTATGTTTAATAACACCGCCCCTGCAgttactgatatatatatataatataaatgtacagtatatatttaaataaaacgtGTTTTCAAGTTA

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99639 lncRNA upstream 70876 15666348 ~ 15669769 (+) True G73891
TU99565 lncRNA upstream 111467 15571269 ~ 15629178 (+) True G73832
TU99566 lncRNA upstream 163112 15572302 ~ 15577533 (+) True svip
TU99551 lncRNA upstream 282788 15454935 ~ 15457857 (+) True G73819
TU99549 lncRNA upstream 311000 15428748 ~ 15429645 (+) True G73817
TU99698 lncRNA downstream 9434 15764540 ~ 15765125 (+) True G73941
TU99735 lncRNA downstream 140613 15895719 ~ 15896522 (+) True G73970
TU99740 lncRNA downstream 238063 15993169 ~ 15993836 (+) True G73975
TU99761 lncRNA downstream 295603 16050709 ~ 16051543 (+) True G73990
XR_002650250.1 lncRNA downstream 379378 16134484 ~ 16147862 (+) True LOC103025699
XM_007228230.3 mRNA upstream 2583 15717065 ~ 15738062 (+) True LOC103044315
XM_022672192.1 mRNA upstream 2583 15717065 ~ 15738062 (+) False LOC103044315
XM_007228228.3 mRNA upstream 112937 15624828 ~ 15627708 (+) True fancf
XM_007228226.3 mRNA upstream 163117 15572310 ~ 15577528 (+) False svip
XM_007228221.3 mRNA upstream 290775 15436399 ~ 15449870 (+) True slc5a12
XM_007228241.3 mRNA downstream 30847 15785953 ~ 15795750 (+) False LOC103046771
XM_007228239.3 mRNA downstream 30886 15785992 ~ 15798451 (+) True LOC103046771
XM_007228242.3 mRNA downstream 55303 15810409 ~ 15814622 (+) True nr2e3
XM_007228243.3 mRNA downstream 66287 15821393 ~ 15828549 (+) True stoml1
XM_015601319.2 mRNA downstream 76351 15831457 ~ 15839847 (+) True LOC103021835
XR_002650242.1 other upstream 819642 14891534 ~ 14921003 (+) False rpgrip1l
TU99159 other upstream 1091094 14648829 ~ 14649551 (+) True G73533
XR_002650241.1 other upstream 2842714 12871484 ~ 12897931 (+) False LOC103043719
trnar-ucg_4 other upstream 3137221 12603352 ~ 12603424 (+) True trnar-ucg_4
TU97933 other upstream 5658505 10078579 ~ 10082140 (+) True G72621
TU99974 other downstream 531570 16286676 ~ 16288329 (+) True G74169
TU100573 other downstream 2699745 18454851 ~ 18455197 (+) True G74649
TU100801 other downstream 3327710 19082816 ~ 19085556 (+) True G74832
TU101007 other downstream 3772885 19527991 ~ 19533073 (+) False LOC103044129
TU101298 other downstream 4448513 20203619 ~ 20207922 (+) True LOC103028745

Expression Profile