RNA id: XR_002650248.1


Basic Information

Item Value
RNA id XR_002650248.1
length 3352
RNA type misc_RNA
GC content 0.51
exon number 13
gene id LOC103046265
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 15758303 ~ 15780678 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGCCCCGCCCATTCCCACCGCCTCAACCTGAGGAACCCGTGGCTGGATTCTTTAAGGCTTTCAGCTCAAACTTTCATCTGATCGCGCGCGTCGCCTTATCCTCCCCACACTCCCAGCTCGAGCGTGCCCGTCCGGACCGCGCGAGTCCAGTTTCGTCCCTTTCGCTGCTGACTGTACATGCAGGCCATGAGCTCGGCTTCCGAGGGCCTCTTCTTCACGGCTCTTCAGCCCAACTCCACCGTGAGCACGTACGCCCTGCCGCCCGAGAGCCAGCTGGGGaacggcggcggcggcggcggcggcggtgtTTTCTCGGATGAGGCGGCTCGAGCCAAGCGCGTGCAGCAGCAGGTGGCCCTGAAGCTCGCGGAGAGAACCAACACGATCTCGCGGCAGAACGGCGGCACGCAGCAGTACGCGgcctcagAATTTGGTGGTTCTTCTACAATGACAAAGTACCAGACCTACAATCCAGGCTTCAGCTCAAAGTCGTCCTACATGTATTCCACCTCCAGCAGACCAATGATGGCTCAGCGTATGCCTGCAAACTCCAGCAGTGGCTACTCGTCTCGCTCAGCTGTGGATTTTGGCGGCAGATCTCAGATGAGCAGAGGGGCTGGTGCAGGAATGATGTATAGCCATGACGATGGCATGATGATGGGCATGGGCTCCGGCGGGTACCAGGCTGGATACCAAGCTGGATACCAGGGTGGATACCAGGGTGGATACCAAGGTGGATTCCAGGGCGCAAGCCAGGGCGGACAGTCTCAACACCAACAGATTACCACGATAAATCGCCCTGTAAGTCGATCTGCAGGCCCAGAGCCTGATGTTGCCTCTCTGCGCTCCTTTCGCATTCAGTCTTTGCCTCAGCAGCAGTCTGTGACGACGTGGATGACACAAGACGGCAGTGAGGGAAGCCTGGTGTCTGATCACGATGCCGCCTACATGCGTCAGGAGGCATCCTACGGCATGAGCAATGGCTACGCATCTACGTACCCAAGGCCAGCCGTGTATTCAGCAGCCAGCAATGGCTTCAGCTCTGGGGCTGTTCAGACCTCCATGACGCTGCCCCCCATGAGACGCTCCCTGAGTGGCACTCTGGCCCGCAGTGGAGGTGGAGGAGCAGCAGTGGAAGAGGAGTCCTACGTCCGCCAGTCCTTCAAAGGCCCCTCGCAGCGCACCATCAACAGAATCACCCAGCGCCAGGTTCGCAACTCCATGTCCGCAGGGAGTGTCcaaggaggaggtggaggagggggCTTTATGATTGGTGGAAGTTCTCAGGGTAACCTGGCCATGATGCAGCAGGGCAGGCTGTCCCGCGCCGCCTCCATGAGGAGTGTTATCAGTGTTGGAAAAGGCAAGGATGTCTTCGATGGCATGGATATGGCTGGTAGCATGGGCAACCTGAGCGGAATCAATACTCTGGACATGCCAACTGCTGTTTCCTATCTGGATTCCCCTGATGTAGAAACGCAGGTTCTGGGAGCTGCCTATATCCAGCATGAGTGCTACCACAACAACGATTCTAAGAAGCTGgtgaatcagctgaaaggtATAGTTCCTCTGGTTCACTTGTTTACCAGCGAGAGCGAGGAAGTGCAGCGCTACGCCACCGGAGCAGCCAGGAATCTCATCTATGAGAACATGGAAAACAAAGTGGCTCTCATTGAGGCTGGAGGAATTCCTCAGCTCATGGTTGCCCTGAAAGAACCAGATGATGAGCTCCACAAGAACATCACTGGAATTCTGTGGAATCTCTCCTCTAAGGATAACCTGAAGGAAAAGTTGGCGAGGGAGACGCTTCCTAAACTGACTGAGGAGGTACTCATTCCTCTCTCTggcacaggagagagagagatcattgAACACACTCCTTCAGAGGCAGATATCTTCTTCAACACCACTGGATGCCTCAGgaatcTGAGCTCAATAAATGAGAAAACCCGACAGCAGATGAGAGAGACTCATGGTCTGGTGGATGCTCTGGTGGGATACATTCAGAGGTCTCTGGATGAAAGCAGTGTAGAGGACAAGGGAGTggagaattgtgtgtgtgtattgcgaAACCTGTCTTATCAGCTGTACAGCGAGATTCCCCCCTCAGCACTCATGCGTTTGGAGGGTCCCACACGAGCCCAGGCTTCATCCAAAGGAGAGGCTATCGGCTGCTTCACTCCTCAGAGCAAGAAAGCAAAAGACAGACAAGATAAGGACCTGACAACGTTTACGGAGGTGGCTCGAGTACCAAAGGGCATTGAGTGGCTGTGGCATCCGAAGGTGGTAGAGCTGTATAACAAAGTCCTGCAGCGGTGTGAAGTGAACACCATCACCCGAGAggcagctgccggagccctgcaGAACATTACAGCTGGGGACAAACGGtgggcGTCCATCCTGAGCCGTGTGGCCTTAGAACAGGAGCGCATGCTGCCTGTGGTTCTAGATCACCTCAGGACAAACAGTGATCTAGAGCTGCGATCCCTCACTGGCTTCCTCAGGAACCTGTCTCGTCATGCCAGGGACAAGAATGACATGGCCACCAAGGTGGTGAGTAACCTGGTGTCCAAACTGCCAGCAGACGGCTTCCAGAAGGAGCCCTCGGCCGATGTAGTCGTAAACATCTGCGGTGCACTCAACAACCTTGTGACCTGCAGTGAGGTGGCAGCACGGGATATCACTTACTTTGATGGCCTTCCCAAGCTGGCGGGCATCAAGAACTCTAATGATAACAGTCCTGCGAAAGTGAAGGCAGCCAAAGCAGCATCCACAGTCCTCTGCAATATGTTCCAGTATAAAAAACTACACAAAGACTACAAGAAGGTAATTGATGTATTAACATTACTTTCTTAACCCTTCCTTGAACAGAAACTGAGATTATTATTGCATAATTTAGCGCCATTATTTGAACAGAAATTTGCTAAACATTAGTGTCATAGGGTCTACAGTGTATTGCAGTGTAGTTTTTTCTTCTAGTTTTAATGTGCTCagaaagaaaatgcattaaatttgCTTGAGTGTGCATCATTTTCAAGTGagtaaaattagattttaaaacCCTGACACTGGCCTCTGCACATAACACTATATCTGTCCTGTAGATACCATTATTAAtgaaagttttatataatttattatttgtattaatttatatagTTAAGTATGGTAGCAcattttgttgtgtgtgtatagcttagttgttgtgtgtgtatagctttGTACCTAACTTTACCCAGCAATTTTCATACATAGAATTCAACACAAAGAGCTTcacaacataatataaaaaaatgaaaacaacaaaacaaaaaagtatataaacaaatataacatttcattaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99658 lncRNA downstream 117512 15643821 ~ 15644252 (-) True G73910
TU99622 lncRNA downstream 184266 15572334 ~ 15577498 (-) True G73877
TU99607 lncRNA downstream 233302 15448674 ~ 15528462 (-) True G73870
TU99604 lncRNA downstream 307154 15449504 ~ 15454610 (-) False G73869
TU99603 lncRNA downstream 307938 15449504 ~ 15453826 (-) True G73869
TU99834 lncRNA upstream 74879 15853302 ~ 15953813 (-) True LOC111193099
XR_002650249.1 lncRNA upstream 149061 15927484 ~ 15952104 (-) False LOC111193099
TU99883 lncRNA upstream 325193 16103616 ~ 16108725 (-) True G74091
TU100007 lncRNA upstream 424101 16202524 ~ 16215525 (-) True G74199
TU100011 lncRNA upstream 440673 16219096 ~ 16222273 (-) True G74202
XM_022672188.1 mRNA downstream 51158 15666349 ~ 15710606 (-) True ano5
XM_007228231.3 mRNA downstream 51159 15666349 ~ 15710605 (-) False ano5
XM_007228232.3 mRNA downstream 74521 15668474 ~ 15687243 (-) False ano5
XM_007228233.3 mRNA downstream 77148 15668474 ~ 15684616 (-) False ano5
XM_007228306.3 mRNA downstream 98477 15662002 ~ 15663287 (-) True LOC103041761
XM_007228244.3 mRNA upstream 61263 15839686 ~ 15856661 (-) True ccdc33
XM_007228247.3 mRNA upstream 201558 15979981 ~ 15984118 (-) True islr2
XM_007228248.3 mRNA upstream 235942 16014365 ~ 16026901 (-) True sema7a
XM_022672195.1 mRNA upstream 261642 16040065 ~ 16051577 (-) True man2c1
XM_007228250.3 mRNA upstream 261642 16040065 ~ 16051574 (-) False man2c1
TU99163 other downstream 1216326 14542209 ~ 14545438 (-) False LOC103025073
TU98709 other downstream 3140408 12610834 ~ 12621356 (-) True G73172
TU98667 other downstream 3196798 12564348 ~ 12564966 (-) False fbxo31
TU98668 other downstream 3196890 12564348 ~ 12564874 (-) False fbxo31
TU98666 other downstream 3196966 12564348 ~ 12564798 (-) False fbxo31
TU100463 other upstream 2098603 17877026 ~ 17883786 (-) False nrg4
TU100498 other upstream 2204324 17982747 ~ 18029747 (-) True G74591
TU100745 other upstream 3160751 18939174 ~ 18940464 (-) True G74791
TU100809 other upstream 3292515 19070938 ~ 19072888 (-) True G74838
TU101215 other upstream 4081271 19859694 ~ 19865982 (-) True G75100

Expression Profile