RNA id: XM_007228239.3


Basic Information

Item Value
RNA id XM_007228239.3
length 2766
RNA type mRNA
GC content 0.43
exon number 14
gene id LOC103046771
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 15785953 ~ 15798451 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGAGAGCGAATGAATGGAGCTGCTGCGGGTCAGCTGACTGCTTTTCACCGCTGGGTCACATGACCTGTTTTCCGCTCTTCAGCATTTTCACTTTCCCCTAAACCTTACAGTCACAGTGTTCTCTCAGAGCGCTGAGCTGTGGGGGTTTGTAGGGAGTTTATAGGGGGTTTGTAACGCGGTTATTCTATATTAAAGCTGTATCATGTTTCAGACTGAGAGGAGGTTTCTCCGGCTGCTGTTCCTGCTCTGTATTCTCCACTATGAAGCAGGACAAGTGTTTGGAGTGTGGCCAATGCCCCAGCAGATCACCCAGTCTACAGACAGGTACCTCCTGAGTCCTCAGAGCTTCTCCTTCAGCTACTCCAAAGACTCAGCTGCTCAGAGCGGCTGCTCCGTCCTGGACTCTGCCTTCAAAAGATACTACAGCCTGATCTTCCCAGACGCTGCTGATGGAGCACGATTCAGCAACATTTGGATGGATCCAACGCCCTTTACAGTGTCAGTCAGTGtcaaaagcggagagtgtgatGGATATCCCGATGAAGGGTCAGATGAAAGCTATAACCTGAGCGTGGCTGCAGGTGCAGCTGCATTGAAGGCACAGTCAGTATGGGGAGCACTGAGAGgtctGGAGTCCTTCAGTCAACTGGTATACCAGGATAAATACAACATGTATTTTGTTAATAAGACTGAAATTCAGGACTTCCCACGCTTCGAGTTTAGAGGGCTTTTGCTGGACACTTCAAGGCATTATTTACCTCTGAACGCCATTCTGAAAACTCTGGATGCCATGGCCTATAGTAAATTCAATGTGTTTCACTGGCACATTGTGGATGACCCTTCATTCCCATACCAGAGCTACAGTTATCCGGACCTTAGCAGCAAGGGAGCTTTTCACCCGATGACCCATATTTACACACAGTCAGATGTAAAGAGGGTAATTTCTCATGCCAGAATGAGAGGAATCAGGGTGATACCAGAGTTCGACACTccaggacacacccagtcatgGGGTAAAGGGCAGCCAAACCTGCTAACTCCCTGCTATAAAGGAGACGTTCCGTCTGGAACATTTGGTCCCGTCAATCCAATTTTGGATTCGACCTACCAGTTCATGAGTGGCCTTTTTAAAGAGATGAAATCAGTCTTTCCCGATTCCTATGTGCATTTGGGTGGAGATGAGGTTAATTTTGCTTGCTGGAAGTCCAATCCTAACGTGCGGGCGTTCATGACAAAGATGGGCTTTGGACATGATTACACCAAACTGGAATCATACTACATAGAAAAcATTGTAAACATCAGTTCTGCACTCAACAAGACCCCCATTGTTTGGCAGGACGTGTTTGACTACCGTGAAAGGATCCCTAAGGACACAGTGCTGGAGATCTGGAAAGGAGTTCCTGCAGATTACCGAACTGAGCTGGCCAAAATCACTCACGCTGGGTACAGGGTACTGCTTTCGGCCCCTTGGTACATCAACCATATCAGCTACGGGCAGGACTGGCGCAATTCCTACACTGTGCAGCCCCAGAACTTCTCCGGCACAGACCAGCAGAAGGCGCTGGTGATTGGTGGTGAGGTCTGCATGTGGGGAGAGTATGTGGATGCAACCAATCTCCATCCACGCCTATGGCCCAGAGCATGTGCCGCTGCAGAAAGGCTGTGGAGTAATGAGGAGATGACCTCTAATGTGGATCAGGCTTTCCCTCGCCTAGAGAAATTTCGCTGTTCTCTGATCAGGCGTGGTATCCAAGCAGAACCTCTGTTTGTAGGCTACTGCAAAGATGAGTATAGGGGTGTGTAAAGTATAGGAATGGACTGAGGCAGGAGTgaaattttatgttgcacttgGATTGCacttgatttttaaatattttgttaataatattaaatcagAGTTGAAATGATCTAAAATGCTAAGTTAAGAAAGCAGCGTTTCTTACATTTAAGtacaattttatttcatttcagacAGTAAAAACCCAAAATATTTTATCTGTTCATCTTCagtttcatttgttaatatgcACACACTTCAGGAATTTAAGCCTGAAACACATTTCAAATAAGTTGCaacagtaaagcatttaccactaTCCTGCAAACATGTCTTGAGGTGTGTAATAGTATGAGCTtgtcatttttcatttaaaatttctCTACACATTCTTTATTGGAGACAGGTCAGAACTGTAACCAGGACTTTCTAGTACACCTACCTCTTCTTTCCCAGCCAATGCATTGTTATTGCGTGCAACATGTGGTTTTGcactgtcttgttgaaaaacTAATTGATGGAATAAAATGGTGTCTTAATTAATGCTGCATTATAAAAGTAACCTGACAAAATCCCATACCAAGACAAACCCCAGCTTTTGGACTTATCtatgctgcattttttttaaatatgcctTTATTGACAAGCTTTGTTCCCTAAAGATATTAACCTTTGTGCTTATGGTACTTTTTGTACCTGTTGACATCGCCTATTTAAATTCATATCTAAATGTAGTATCTCATAAGTAGCTTTAAATCTCCCTATTCCTATcctttttggaatgtgttgcaggaaTGAATGTAtagtaacaaatgaaatgaagctAGCCAGAAGAAACACGAAATATTGTGGTTTCAAACAGTTTGCAATGAAATAAGCCTGAATGTTAGAATAGTGTTTTCCTCAATGGGCTGTataatgttttttgtattttctataaTGATGTACATGatttctaaaataattaaactgtgaCTTTCAACTTTTAA

Function

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0004563 beta-N-acetylhexosaminidase activity molecular_function

KEGG:

id description
K12373 HEXA_B; hexosaminidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99698 lncRNA upstream 20867 15764540 ~ 15765125 (+) True G73941
TU99639 lncRNA upstream 116223 15666348 ~ 15669769 (+) True G73891
TU99565 lncRNA upstream 156814 15571269 ~ 15629178 (+) True G73832
TU99566 lncRNA upstream 208459 15572302 ~ 15577533 (+) True svip
TU99551 lncRNA upstream 328135 15454935 ~ 15457857 (+) True G73819
TU99735 lncRNA downstream 97268 15895719 ~ 15896522 (+) True G73970
TU99740 lncRNA downstream 194718 15993169 ~ 15993836 (+) True G73975
TU99761 lncRNA downstream 252258 16050709 ~ 16051543 (+) True G73990
XR_002650250.1 lncRNA downstream 336033 16134484 ~ 16147862 (+) True LOC103025699
XR_002650251.1 lncRNA downstream 336033 16134484 ~ 16147862 (+) False LOC103025699
XM_022672193.1 mRNA upstream 30886 15739562 ~ 15755106 (+) True sigirr
XM_007228235.3 mRNA upstream 30886 15740454 ~ 15755106 (+) False sigirr
XM_007228236.3 mRNA upstream 30886 15740645 ~ 15755106 (+) False sigirr
XM_007228230.3 mRNA upstream 47930 15717065 ~ 15738062 (+) True LOC103044315
XM_007228242.3 mRNA downstream 11958 15810409 ~ 15814622 (+) True nr2e3
XM_007228243.3 mRNA downstream 22942 15821393 ~ 15828549 (+) True stoml1
XM_015601319.2 mRNA downstream 33006 15831457 ~ 15839847 (+) True LOC103021835
XM_022672194.1 mRNA downstream 33006 15831457 ~ 15839847 (+) False LOC103021835
XM_007228246.3 mRNA downstream 153486 15951937 ~ 15979103 (+) True stra6
XR_002650242.1 other upstream 864989 14891534 ~ 14921003 (+) False rpgrip1l
TU99159 other upstream 1136441 14648829 ~ 14649551 (+) True G73533
XR_002650241.1 other upstream 2888061 12871484 ~ 12897931 (+) False LOC103043719
trnar-ucg_4 other upstream 3182568 12603352 ~ 12603424 (+) True trnar-ucg_4
TU97933 other upstream 5703852 10078579 ~ 10082140 (+) True G72621
TU99974 other downstream 488225 16286676 ~ 16288329 (+) True G74169
TU100573 other downstream 2656400 18454851 ~ 18455197 (+) True G74649
TU100801 other downstream 3284365 19082816 ~ 19085556 (+) True G74832
TU101007 other downstream 3729540 19527991 ~ 19533073 (+) False LOC103044129
TU101298 other downstream 4405168 20203619 ~ 20207922 (+) True LOC103028745

Expression Profile