RNA id: XM_007228244.3


Basic Information

Item Value
RNA id XM_007228244.3
length 1466
RNA type mRNA
GC content 0.46
exon number 11
gene id ccdc33
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 15839686 ~ 15856661 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGCTTCAGCCTCTGTACTGCCATTCTCTTTagctctgtctgtctttctcactGTGATATTAAATTAGTTTCCGtcataaagttcagaatctCTAAGGCCAATGCAAACCTCTGAGGAACCACCGGTGCTCTCCACCACCACTAGACAGctccagaGGGATGGTTATGATCTGCCAGCCTATGATGCTCTTGCCCAGATCCTCCCGGAATACCAGCACCTACTCAAAATACCAAAAGCTCCTCGACAGAGCAAAGGCGAACCAGGAGAACAGAAAAAGAGCCAGAGGTCGTCAGAGCTCAATCAAACATTTGAAGTCGTCTCCTCAGCTAGAGGGCTCCCAGTGGCAGATCAGTCTGATGACCCACATGTTGCTGAAATTAATGAACACCAAACTAAAGAGCTGGAGAACTACCGCACTGCGATGTGTAAGATGGCTGAAGACATCCTCGCTCTGCGCTCTCAGGTGACCAGCCTAGAGGCGGAGAATAGTCAGCTACGCAGTGAGCTGTCCCAGCACCAGGACCTTGGTTGGACCCTATTGGATGACACTGACATTGACATCATGACCAAGACTGAGATCACAGACAGAATTgTTTCTCTAAAGGCTAAATTGGCCAGTGAGAGCAGTAAAACAGCGGAACAGAGGGAAAAGATCCAGCGTCTTCAGAACGAGCTCATCAGGAAGAATGACAGTGAGAAGGAGTTGGTGTTGTTAAAGCAGGCCCATCAACAGCAGCAGGCTGTGCTTCAGCGCTATCAGGGACGCATCAAGAAATGTGCAGTGCTGGAGAATACAGTACGCCAACAGGAGAAGATTATTGAACAGATGGAGAAGTTGCTGGATACAAAGCTAAGagaaaggaataaagagaacacagagaggaaGAAGGCAGTCTATAAACGGAAAGaggaGGATGCAAGCAAGAGGAGAGAGATTGAGTCTGTGCTGTCGGCAGAGAATTCCCGCCTCAGAGAGGAACTGGAAAGGCTGCGCCATCAGCCACCAGCTGTTATTATACAACAACCTGTCCAGACAGAGCAGCCTTTTTCAGACAGTGAGAAGCTGAGACTGTTGGGGCAGCTAGAGAGAGCAGAGGCCTACATCCACACACTGGAAAAACAGCTGGAGGAGAACGCCAGACTGTGGGGGAGAGAAAAGCAAGAGATGCTGATCAGGCTCAGTGAATATGAGCATGGATTCACACTTACTTCTACAATGGGTCTGCATGATCTGCCACAGaaaaacattgcaGACACTGTTCTAAAAAAATGCCCAGCACAGACAACTGGATCCCAAAAAGTGATGAAACCTTCATGCTTTTTAATACAGTGAAATGAAAcacacacctgttttttttttttcagatacatTTACAGTGTATCATAGATGAACTGTAGTAATTTAACAAATTATATATGGCTTAGTAAAACacagatacaataaaacattacatcAGTACCTCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99658 lncRNA downstream 195434 15643821 ~ 15644252 (-) True G73910
TU99622 lncRNA downstream 262188 15572334 ~ 15577498 (-) True G73877
TU99607 lncRNA downstream 311224 15448674 ~ 15528462 (-) True G73870
XR_002650249.1 lncRNA upstream 70823 15927484 ~ 15952104 (-) False LOC111193099
TU99883 lncRNA upstream 246955 16103616 ~ 16108725 (-) True G74091
TU100007 lncRNA upstream 345863 16202524 ~ 16215525 (-) True G74199
TU100011 lncRNA upstream 362435 16219096 ~ 16222273 (-) True G74202
TU100012 lncRNA upstream 395831 16252492 ~ 16252752 (-) True G74203
XM_007228238.3 mRNA downstream 59008 15758303 ~ 15780678 (-) False LOC103046265
XM_007228237.3 mRNA downstream 61271 15758303 ~ 15778415 (-) True LOC103046265
XM_022672188.1 mRNA downstream 129080 15666349 ~ 15710606 (-) True ano5
XM_007228231.3 mRNA downstream 129081 15666349 ~ 15710605 (-) False ano5
XM_007228232.3 mRNA downstream 152443 15668474 ~ 15687243 (-) False ano5
XM_007228247.3 mRNA upstream 123320 15979981 ~ 15984118 (-) True islr2
XM_007228248.3 mRNA upstream 157704 16014365 ~ 16026901 (-) True sema7a
XM_022672195.1 mRNA upstream 183404 16040065 ~ 16051577 (-) True man2c1
XM_007228250.3 mRNA upstream 183404 16040065 ~ 16051574 (-) False man2c1
XM_007228254.2 mRNA upstream 198395 16055056 ~ 16085626 (-) False ca12
XR_002650248.1 other downstream 61263 15761764 ~ 15778423 (-) False LOC103046265
TU99163 other downstream 1294248 14542209 ~ 14545438 (-) False LOC103025073
TU98709 other downstream 3218330 12610834 ~ 12621356 (-) True G73172
TU98667 other downstream 3274720 12564348 ~ 12564966 (-) False fbxo31
TU98668 other downstream 3274812 12564348 ~ 12564874 (-) False fbxo31
TU100463 other upstream 2020365 17877026 ~ 17883786 (-) False nrg4
TU100498 other upstream 2126086 17982747 ~ 18029747 (-) True G74591
TU100745 other upstream 3082513 18939174 ~ 18940464 (-) True G74791
TU100809 other upstream 3214277 19070938 ~ 19072888 (-) True G74838
TU101215 other upstream 4003033 19859694 ~ 19865982 (-) True G75100

Expression Profile