RNA id: XM_007228247.3


Basic Information

Item Value
RNA id XM_007228247.3
length 3455
RNA type mRNA
GC content 0.46
exon number 2
gene id islr2
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 15979981 ~ 15984118 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTATGGAGGCGGGAACGCGCAATGGTTTCTGCTCCAACTCGAGCACAGTGAGAGAACAGCCTCCGGACTGCTCAGCGTTCCACTGACACTAAAATGTCTAATCTGCTGTCCATCAGCAAATATCTCTTCGTCTTCCAAAATAATACAGGAGTGTACAACATGATTTGGGATCGTTCTACTAACCACCACTAGATATTCGCCTTATATTCGCTCAGGTGTCGATCTGAATTATTTCTGTTCGAGGAGTGGAGATTCCCACGCACAGGTGCTGAAAATGGCAAGCAGGTACCTGGTCCTCCTTGCCCTGGGGACTGCTGTGATTGCCAGTGTGCAGAGCTGCCCTGAGCAATGTACCTGTTCAGATAAGAACCCCCATCACTTTGTGGACTGCGCTTACAAAGACCTTCTGCTGGTACCTTTGGGCTTGCCATCCAACGTGACGACTCTCAGCCTTTCAGCAAACAAGATCCAGGTGCTGAAATCCAAAAATTTCGTAAGCGTGACCCAGGTCACATCTCTTTGGCTTTCTCACAATGAAATTGTCACCATTGAGAGAAATACGCTGGCTCCAATGTCCCAGCTAAAGAATCTGGACCTAAGCCATAATAAAATTGTGAATTTTCCATGGGAGGACCTTGCCAACCTTTCCACTCTTCAGCTGCTGAAGATGAATCACAATGAGATGGTCAGCCTGCCCAAAGACGCTTTTACTAACCTGAAAGAGCTGCGTTCAGTGCGCATCAACAACAACAAGTTTACAACCATCATGGAAGGAACATTTAATCCTCTGATTGCCATGGTGCACCTTCAGATTTTCAGTAATCCTTTCAGCTGTTCATGTCAACTGGAATGGATGAGGGACTGGATTACTGGATCTCATTTGAAAATCTCCATCCCAGATCAGAACAACATCTTGTGTGATGCTCCCAGCGACCTGAAAGGTATAGAGGTTACCAAAATACCCAAACTGGACTGTCAAGCCCCAACTGTTACCATAACCTATCAGCCCAACATTGAAAGCACAGAAATATATGAGGGCTATATGGTCATCTTGAACTGTGAATCTAAGGGGAACCCCCAACCTACTGTTGAATGGGAAATTTTGGCAGGAAACCAACTACTGACATTCACCTTGCCATCCATTGTTGAAAAAAGTGAGGTGCCTATCAATGGAGCGCCCACTAACACCAGGTTCCTCATCTTTCAAAATGGCACCCTGATTATCCCTCGCATGAGCAAAAAAGAAGATGGCAACTACAGCTGCTCTGCGACCAATGACATGGGCAAAGCCCAAAGCACGGTGAAACTCACTATGGCTGGCACCAAAAAGCATGCCGTCAATTCTATCCTGGACACAAAAGCAGGCATCAGTCCATCTGGAAACAAGCCTGGCCCTAAGagctccaaaaacagtgtgatcAATATGTGGCCCAAACATGAGAAGACCAAACCTCTTCCAACTGGAACATCATCCATCACTATTAACAATGAACAAGTGGAGGAAGGCTCTGATTCTGTAATATTTGCCAGCAGGTGTGGAGTAAGTGATGGCACACAGTATATATCTAATCACGCTTTCAACCTGAGCTTGGATGATCTGAAACAGTACACTTTTGACTTTGGCGTGATTGCACTGGAGGTGTCTGAAACGGAGGCTAAAGTCCAGCTCAACCCTCTTCAGATGGCCAATGCCAAGTCGAACCTTCACCTTAGCCAAGCGCAAGACCCAGACACTGTTAACAAAGAGACGATCAGTATGTACCAGACGTCGCCCAAGAAGTCCCCTATGGacatgctgtatgtgtgtgttagcacGGGCAATGGACATTCAGTGGTGCAGTGGTCCAAGATAGAGGATGGTGTCAATACTTATCGCTTCCAGGGCTTAAAGCCAGGCACAAATTACACCCTGTGCCTCACCTATGGGGGTCAGGACTGCCAGGTGCAGGTGGTATTTACCACAAGAAAGAAAATCCCATCTTTGCTTATCATAGTGGTGGTCAGCATTTTCTTGCTGGCTTTGGCCACGGTGCCCCTGCTGGGAGCCACCTGCTGTCACCTACTGTACAAGTACCAGGGCAAGACCTACAAGCTGATCATGAAGGCACAGAATCCAGACCAGATGGAGAAGCACATCGCCACGGACTTCGACCCCAGAGCCTCCTTTGTGGAGTCGGAGAAGAACTTCAACCCGAGTGAGCTGGGCGAGGGAGAGGGAGAAGCTGATGGAGAGGAAGGAGAGGGTGAGGGAGAGGAGGTGGAGGGCAGCGTGGTGGCCGAGTCCATTCCCGAGTCGCAGTCCAAAACTCAGGAGGAATTTGAAGTGGGCTCCGAGTACAGCGACCGGTTACCTTTAGGCGCGGAGGCGGTGAATATATCTGAGGAGATAAACGGCAACTACAAAGAGCCACGCTGAAAGTAGCCCACATGTGTTGCTAAAGGGAACGGACGGTGTGTAAAATAGTTACTTTCGAACACATTCCAAACCAGGCGAATGCCGACTATGTCATCTCACGTTATTCTTGTGCCCTGAGAAAAGGCGCGCTACTCAGTTTTACCTCAGAAGTTTAGCTTAACAGCACATAGATATCTAAAGCGTATAGATATCTATGAGTTCGAATCTCAGACGGGGCTTTGGACTGTACTGCGAACAAAGGGACTGTACTTCAACAAACCTCAGACCAGTTCAGTTATACACTGAACCTAAAGTAAAGTCCACCTccttaaacaaacatttaaacatagaaaaaaatattggcatTTACGCATATCCATGTATAAATTCACAGTAGCCCATAGCGGCCAGTCATTAACCGAAACGCCCTGTAACCCAGGGTATAGTAAAGTGGTCATAAAGTGGTCATCTATAGCCCACATCTGAACCCACATTCAGAGGGTGCTGGAAAGGATTTCACCTCCTTCCACTGCACAACAAGGCATGAGCGTGTCTGTaaaaaagagagtaagaaaaagaaaaggacaaaaaacaacaacaaaacaaatgagTGACTCCATCCATTACTTGCCTCATTACTATCATAATTGTGATCCCTTCTGCGATCTGGTGCTTCAGATAATCCTCTCGCCTCTCTGGATGGATGAAATGAACGTGTCCTTTTCTCTGCTTTAAGATAACCTTGTTCGTGGCATGTCACACGTCCGTATTTTCCAGTGTGTTTTCTTATTATTCTAGGCTGTAGGACGGTAGATATTCTAAGTGTCGGTTTGTGCTGTAAAAGCcagtaaaaactgaaaaagatgTGCTCTTTTTATATCGCTCGCCGCTTCTCAGCGAGTGTCCTGTACATTTTTTTGGGGTGATTTCGTGTCGAACTGTTTAACGATgttgtaaagaaaaacaaacgaacaaacaaaaaaatcttccGACCCTACAAAGATTTTGATATGATTTTATGTACGTGAAACTTAATAAAATTGTGAAAAACGGACAtaca

Function

GO:

id name namespace
GO:0005515 protein binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99834 lncRNA downstream 26168 15853302 ~ 15953813 (-) True LOC111193099
XR_002650249.1 lncRNA downstream 27877 15927484 ~ 15952104 (-) False LOC111193099
TU99658 lncRNA downstream 335729 15643821 ~ 15644252 (-) True G73910
TU99622 lncRNA downstream 402483 15572334 ~ 15577498 (-) True G73877
TU99607 lncRNA downstream 451519 15448674 ~ 15528462 (-) True G73870
TU99883 lncRNA upstream 119498 16103616 ~ 16108725 (-) True G74091
TU100007 lncRNA upstream 218406 16202524 ~ 16215525 (-) True G74199
TU100011 lncRNA upstream 234978 16219096 ~ 16222273 (-) True G74202
TU100012 lncRNA upstream 268374 16252492 ~ 16252752 (-) True G74203
TU100015 lncRNA upstream 302110 16286228 ~ 16292019 (-) True G74205
XM_007228244.3 mRNA downstream 123320 15839686 ~ 15856661 (-) True ccdc33
XM_007228238.3 mRNA downstream 199303 15758303 ~ 15780678 (-) False LOC103046265
XM_007228237.3 mRNA downstream 201566 15758303 ~ 15778415 (-) True LOC103046265
XM_022672188.1 mRNA downstream 269375 15666349 ~ 15710606 (-) True ano5
XM_007228248.3 mRNA upstream 30247 16014365 ~ 16026901 (-) True sema7a
XM_022672195.1 mRNA upstream 55947 16040065 ~ 16051577 (-) True man2c1
XM_007228250.3 mRNA upstream 55947 16040065 ~ 16051574 (-) False man2c1
XM_007228254.2 mRNA upstream 70938 16055056 ~ 16085626 (-) False ca12
XM_007228253.3 mRNA upstream 79651 16063769 ~ 16085634 (-) True ca12
XR_002650248.1 other downstream 201558 15761764 ~ 15778423 (-) False LOC103046265
TU99163 other downstream 1434543 14542209 ~ 14545438 (-) False LOC103025073
TU98709 other downstream 3358625 12610834 ~ 12621356 (-) True G73172
TU98667 other downstream 3415015 12564348 ~ 12564966 (-) False fbxo31
TU100463 other upstream 1892908 17877026 ~ 17883786 (-) False nrg4
TU100498 other upstream 1998629 17982747 ~ 18029747 (-) True G74591
TU100745 other upstream 2955056 18939174 ~ 18940464 (-) True G74791
TU100809 other upstream 3086820 19070938 ~ 19072888 (-) True G74838
TU101215 other upstream 3875576 19859694 ~ 19865982 (-) True G75100

Expression Profile