RNA id: XM_007228248.3


Basic Information

Item Value
RNA id XM_007228248.3
length 2151
RNA type mRNA
GC content 0.45
exon number 14
gene id sema7a
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 16014365 ~ 16026901 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctaaCGGAGAGCTAGCTTCAGTAGaggcagaggaagagagagagaggacacatTGGGACTGTGTGGAGACATGACAGCCGCTGAGGAACGAATTAAACTCTCCTACCGAGCTCTTTTATATGAGTTCTTattatttctgtctgtttttggtTCGAGGGAGATTCCCAGATTAACACTGCATCAAGGCCAACAAATTCTCTACAGCAGAAATTTAAGTCACACAGTCTTCTTACTTCAGAAGGCAGAAGACCGCCTGTTTATAGGGGGATCAAACTATGTGTTAGAAGTTGATGTGAACAGTGGTCGACTAGTAAagAACTTCACACTCACGGATAACAGAGACTCTGTTTGTGATCAGAGTTCTTGTGAAAATACAGTCACAGTAATCGAagatttccagagctgtattttagtgtgtgggacaaatggagaaaacccaaaatgttgGAAATTGTATCCTACGGGGAGTAATCACtccagtgaggtagagcaatacATTGATGGCACTGGGATTTCTCCTTTCACACCTTTACAGAATTCTGTGTCTCTCGAAGCAGATGGGGACCTTTATGCAGCAGCCCCTCTTTATAAAGATGGAACTTCACTACAGTTCCGCAGAAAAGCTGGAAGACAAAACAGTGTATGGATGTATGATCCATGGATTACAGAACCAACCTTCATCTCTTCCTTCCTGGCCAGGAGACGAAATGAATCAATACATGAGAAGATTTATGTCTTTTTTCGAGAGAAAAACCCAGACAGTGGCCCAGAGGCAGACCCTTGGATCTCTAGAGTGGCTAGAGTTTGCAAGGGAGATAAAGGTGGCTCCAAAAGATTCTTCCAGAACATCTGGACGTCCTTCTTGAAAGCACGTCTTGTCTGTGCTATTCCTAGTGAGTCTCTTTACTTCAATCGTCTTCAGGATGTTTTTGTTGTGGAGTCTGAGGACTGGAGGGACTCCAGGGTGTATGCCCTCTTTTCAAGCAGCTGGAACTCCACTGCTGTTTGCATATATTCATTAGCTGAGCTTGATGGCATTTTCGAGAATTCCAAGTTCAAAGGCTACAATGATGAGATTCCAAGCCCAAGGCCAGGAACTtgcgTGGAGGACAGTAGATCTCTGCCTACACATTCTATCAACATCATTAAACATCATCCGGAGATGACTGATTGGATTCACCccatacagaaacacactccCTTCTTCAGAAGCAATAACAATTACACAAAAATAGTAGTGGACAGAGTTCAGGCTGCTGATGAGCAGATGTATAATGTGCTGCTGCTCTCTACGGACACTGGTGTGATCCTTAAGATTTTGGAGGAGAACTCCAATGCCTTTATCATATCTGAAACAATTCTTCTCAATGGCTCTGCTCCTGTGCAGTCAATGAAACTCGACTCTGAAAAGAGAAAGCTGTTTGTCGGATACCCTGGACAGATGTCTGTCTTAGACCTGCAGAGATGCCAGGATTACAAAGCCTCCTGTGAGGATTGTGTTCTTGCCCATTACCCGTACTGTGCATGGACTGAAAACGGCTGCACCTCACAAATtGGGGGAATTCAAAACCTTGCTACTGGTGATACCCTAGTTTGCCGTACAAATtcagtaaacaAAGGTGGAAGAACCAAGCGAGGTACATCATTCTTAACAGCAGCACCACAACCAATAGAACGCATTGTTCCCAAAGGAGTCCCGTACTACCTGTCCTGCCCCATCGAATCCCATCATGCTGCCTACAGCTGGGAGCACAGGAATTTTCACAGCCCTTGCCAACAGACACAGTCCATCTGCCTCCATCTCATACCATCTATCAGTGCAGACGACCATGGAGAGTACACCTGTATGTCCAAAGAGCGGGACTACACGAAAGTGGTTACAAAATACAATCTGCGTGGTCGCCCTGAGCCGAGAACCTTAAGCGGTGGCTGCAAACAGACAGCGCAAAAGGAGTGGCTATTGATTGTATCTGCTGCAGTTCTGTTCTGCATTCACCAGCAAGTCTAGAGTTGTAGGTGTGCTGCACTTTTATTAAGCTTTCCTAATTCTCAGCCTGTCTAGTAAAACCATTCCAGCAGAATGTGAATGCGTTTGATTTACATGCCTGTAACAGGACAGGACCACATTAAATGATTGATGTGTGGACTCTG

Function

GO: NA

KEGG:

id description
K06529 SEMA7, CD108; semaphorin 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99834 lncRNA downstream 60552 15853302 ~ 15953813 (-) True LOC111193099
XR_002650249.1 lncRNA downstream 62261 15927484 ~ 15952104 (-) False LOC111193099
TU99658 lncRNA downstream 370113 15643821 ~ 15644252 (-) True G73910
TU99622 lncRNA downstream 436867 15572334 ~ 15577498 (-) True G73877
TU99604 lncRNA downstream 559755 15449504 ~ 15454610 (-) False G73869
TU99883 lncRNA upstream 76715 16103616 ~ 16108725 (-) True G74091
TU100007 lncRNA upstream 175623 16202524 ~ 16215525 (-) True G74199
TU100011 lncRNA upstream 192195 16219096 ~ 16222273 (-) True G74202
TU100012 lncRNA upstream 225591 16252492 ~ 16252752 (-) True G74203
TU100015 lncRNA upstream 259327 16286228 ~ 16292019 (-) True G74205
XM_007228247.3 mRNA downstream 30247 15979981 ~ 15984118 (-) True islr2
XM_007228244.3 mRNA downstream 157704 15839686 ~ 15856661 (-) True ccdc33
XM_007228238.3 mRNA downstream 233687 15758303 ~ 15780678 (-) False LOC103046265
XM_007228237.3 mRNA downstream 235950 15758303 ~ 15778415 (-) True LOC103046265
XM_007228232.3 mRNA downstream 327122 15668474 ~ 15687243 (-) False ano5
XM_022672195.1 mRNA upstream 13164 16040065 ~ 16051577 (-) True man2c1
XM_007228250.3 mRNA upstream 13164 16040065 ~ 16051574 (-) False man2c1
XM_007228254.2 mRNA upstream 28155 16055056 ~ 16085626 (-) False ca12
XM_007228253.3 mRNA upstream 36868 16063769 ~ 16085634 (-) True ca12
XM_007228260.3 mRNA upstream 230437 16257338 ~ 16313308 (-) True dapk2
XR_002650248.1 other downstream 235942 15761764 ~ 15778423 (-) False LOC103046265
TU99163 other downstream 1468927 14542209 ~ 14545438 (-) False LOC103025073
TU98709 other downstream 3393009 12610834 ~ 12621356 (-) True G73172
TU98667 other downstream 3449399 12564348 ~ 12564966 (-) False fbxo31
TU100463 other upstream 1850125 17877026 ~ 17883786 (-) False nrg4
TU100498 other upstream 1955846 17982747 ~ 18029747 (-) True G74591
TU100745 other upstream 2912273 18939174 ~ 18940464 (-) True G74791
TU100809 other upstream 3044037 19070938 ~ 19072888 (-) True G74838
TU101215 other upstream 3832793 19859694 ~ 19865982 (-) True G75100

Expression Profile