RNA id: XM_007228253.3


Basic Information

Item Value
RNA id XM_007228253.3
length 3777
RNA type mRNA
GC content 0.42
exon number 9
gene id ca12
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 16055056 ~ 16085634 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCGCTCTCTCTGTGTAAAAACGGCGCTTTGCCTCAGTGTTTGTCTGTCCTCTCGCTGGTTAATTAGCTTCGTGTGAAGTCACGGCTCACAAACAGCCTCAACAACTCGCTCGCGCTCTGTGGATGTTCCGTCATGGCAGTGACGTCAGGGCTGGACAGATTGAACATGTCATGCTTAGTATAAAAGGCAGCTCCTATTACACGGTGTTATGATTTCTCTTCTGAGGCACTTTCTGCGTGATAAGAGAAGAAGACCGTGGTCATGATGCCTTTCACTCTGTTAATAATGATCCTCATAGCTTTCCCAGTGTCTTCCAATGGTGGAAAGTGGGGATACAATGGGCCTAATGGAGAGCACCACTGGCCCAAGCACTTTCCATACTGTGGTGGGGCATTCCAGTCTCCAGTAAACTTCCAGCCAGAGTTGCTAAGGTATGATCCGAACCTGTTCGCCATCCAGCTTCAGAACTACAACCTGTCCAGCAGGGAGCAGCTCACTTTAAGCAACAATGGACACTCAGTGCAGCTGTCTTTACCATCCTATATGCAGCTGACTGGCCTGCCCCATCGCTATTCAGCAGCTCAGCTTCACTTCCACTGGGGCACCCAAAATGTGCAGGCTGGCTCTGAACACACGGTTAATGGCAAGCAGTTTGCAGCTGAGATGCATGTGGTACATTTCAACTCTGGCAAGTATCCCAACATCTCCATGGCAGTGGACAAGTCTGATGGTCTTGCTGTGCTAGGAGTTTTCATTGAGGTTGGCGAGTTCAATCCTGCTTTTGAGAAGTTCTTTAAGTATGTCAATGGCATAAAATATAGAGACCAGAAAGTGCAAGTGCCAGCATTCAACATCCGGGAACTGCTGCCTTCTCGTTTGGATGAATATTACCGTTATGATGGCTCTCTCACCACACCACCCTGCTTCCCAAGTGTGCTGTGGACAGTGTTCAGACAGCCTGTCACCATCTCACTCAGACAGTACCTGGCACTGGCCACTGCTCTGTACTCTTCGCATGCTCAAGAGGTGGCCCCGATGCCCATGCTTGGCAACTACCGTAAGCCACAGCTAATGGACAACAGAGTGGTGTTGGTGTCCTTCCAGGATGGCTGGGCGCTGCGTGGTACTCTTTCAGTGGCATCTCCCACACAGAGGAGGCAGGTCATCCAACAGCTGCTGCAGGGAGACCTTGCAGACTTGGCAGATGAAAAACTCCACCAACTTTTGCCAAAGATCAAACGCAAGCCATGGGCTCCTAAGGAGTGGAAGAATGATCTGATCCACCAGCAGagtcaaaaacagagaaacaaggTGCCGGGCCCCAATGGAAAAAACCTCCCGGTCTTAAAGAACACAGACCCAAGCCTCAGTCTGGCAAAGCTTGGTATAAATGAGGatgcactgtgttttatatctaTGGAAAAGAACGTATCTTTTCAGCTGCTGAGACGTCACGCAAACGAGGAGATGGTCCATGCTCTGAAAAGAGTTGTCTTCCCAGAGCTAAACCTTAGAAGCTATTTAAAGTGCAAATCTGATTTGGACCTGCAGACCATAAGGTGTCTTCTCCGCACCAGACCTACAGATGAGGCGGCAGAGCTGGAGCAGTCCCTAACCAAAGCCACCAGGACGGATAGACAGCAGACCATGCCTCTGCCGAGATCCATGACACCGAACCGTGGCTCAGCGTTGACCAAGCTGGCAGGACAGACCCCAATTACTGCTCTGAAGAATGCCCACAACATGTTCCCCCCTTTCTACAGACAGATTCCTGTAGAGTATGAAGATTAGCAACCAGAATACAATCTCACAACCAGAGCAGAGCACATTACAGTAGGCAGCAAAGAATTTACTTCAATTCTGAATGCTGTGGGACATCACAGATTCTCACAAAACTCTATTTAAGGTTTTAGTCTgtcttttatctgtttttttttcttttgcttcagCAATATCTAGACAAAAGTAGTAGCAGAATTATAATAGCAGATTTCAGGATATTTATGTAGCTGCAGACGCACAGAagtcttattctatttattctatCCTATTCTATTGATTTGAAATTATGCAATGATGGTACTTTAATCTTATGCTGCTTTCAAAATCTCTACTAGTCACAGAAATAGAACAGTGCATGATGTGTCAGCCATGTTACAGCAAAGTTAAACatctcaacaataaacacagcttgcatggaggaaagcgcagcaactcagttgcgatacatcagctcagttgcgatacatcagctcacagatgccttatgctgcggacatcacccttttagtGATGTGAGAAGAGAAAGTGCCATCttcccatccagagagagcaaggccaattgtgctctctcaggggtcAGGTAGCCCTGAGATGGCAAGcaacatgaccgggattcaaaccggcgatctccttATCATAGCGCCAGCTTGGAGCCCAACAATATACTCTTTTTTATCTGGAACAAGCACATGTCTTATCAGGGATAGTCAAAACACTTGGGAGAAATGTGTTATATTTgatgttatatttattaaaagtgctagtaaatattaatttaaggaCACAGGTTTTCTTTCATGCAATATAAACTTTATAGCATTGACAGCTTTATGGATTAACTGCAGAAACCAGAACAAAAAACattgtagcagcagcagcattcaACCCCTAACAGGATTTTTTATGTAGTTATTTAAAGTATACAGGGATCCATTCAACTTGAATTAGCTTCTCAAATTTCATACTTTATAAGCTGTTCATGAAGTATCAAATCAAAAGATAAGGTATTGTGATTGTTCTGctcttattatattaaaatttaattaaatctgaattaatttttatttaaatagaaattaattcagtgagtaatgtcaaaattatttttttacctttaccttTTACAAAATATGAACACGGTATTCACTCAGCTAAATCTCCCACAGTGAGATATTTTACTGCCTGCCAACAAAAAACATCACCTTTTAAAACACAGTATGCAAACATgaccaaatacattttaataaaataatttccaaGGTAATACATCTAAGAAATCTTCTAACACTCATtatattctattaatattttttttactcattaatACTCATTCATACCTTTTAAGACCATTTACCTCTATGACGTATAAACCTGCAACTCTTCTTAATCTACTTATTTTACTCTGCAGGGAAAAAGACTAGTGAGGTGTACAGTTCAGTTTAATTGGTTACAAATGTGTCCCTGCAGACCATCCTAAccatattactatattactataccTTTATATAAGCAAATTCTCCTCCAACATTGACACCTATGATGACACATCCgattttaatgataattttacCATTTCATCTTAGTTCCTTTCTGTCACTGAACTCCAGGACCTCCTAATTCCAGTAATAGTCTAGACATGAAACAGCTGTTCTAACAGTTAGCGCACTTTTCTCTGGAATATCCAGGCTGAATTATTTAAACATCACATAGGCTACAGCAACTGGCAAGGAAATATTTCAGCATTTCATAGGGAAAGCTTACTTCAGTGACAGTAATTATACAGTAAAGCGGTTAGAGACATGCAATATGGAAAAAGGCAGCTAAGGATTTAAACTTATGGTGCTTAAGCTTTTAAATATTCCTATGTTGTGGCTGCTTTGGGCGTGAGTCTAGACCAGAAATCTCGAACAGGACCATTTAACGGATTGACACACTTTTTATGTGAAGTTTCTTGAtcataaactgtaaaataaatgcattacatGGAGcaataaa

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K01672 CA; carbonic anhydrase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99834 lncRNA downstream 109956 15853302 ~ 15953813 (-) True LOC111193099
XR_002650249.1 lncRNA downstream 111665 15927484 ~ 15952104 (-) False LOC111193099
TU99658 lncRNA downstream 419517 15643821 ~ 15644252 (-) True G73910
TU99622 lncRNA downstream 486271 15572334 ~ 15577498 (-) True G73877
TU99604 lncRNA downstream 609159 15449504 ~ 15454610 (-) False G73869
TU99883 lncRNA upstream 17982 16103616 ~ 16108725 (-) True G74091
TU100007 lncRNA upstream 116890 16202524 ~ 16215525 (-) True G74199
TU100011 lncRNA upstream 133462 16219096 ~ 16222273 (-) True G74202
TU100012 lncRNA upstream 166858 16252492 ~ 16252752 (-) True G74203
TU100015 lncRNA upstream 200594 16286228 ~ 16292019 (-) True G74205
XM_022672195.1 mRNA downstream 12192 16040065 ~ 16051577 (-) True man2c1
XM_007228250.3 mRNA downstream 12195 16040065 ~ 16051574 (-) False man2c1
XM_007228248.3 mRNA downstream 36868 16014365 ~ 16026901 (-) True sema7a
XM_007228247.3 mRNA downstream 79651 15979981 ~ 15984118 (-) True islr2
XM_007228244.3 mRNA downstream 207108 15839686 ~ 15856661 (-) True ccdc33
XM_007228260.3 mRNA upstream 171704 16257338 ~ 16313308 (-) True dapk2
XM_015601364.2 mRNA upstream 176331 16261965 ~ 16313325 (-) False dapk2
XM_007228261.3 mRNA upstream 232250 16317884 ~ 16350164 (-) True tbc1d2b
XM_022672198.1 mRNA upstream 298915 16384549 ~ 16414345 (-) False cib2
XM_007228263.3 mRNA upstream 298915 16384549 ~ 16414345 (-) True cib2
XR_002650248.1 other downstream 285346 15761764 ~ 15778423 (-) False LOC103046265
TU99163 other downstream 1518331 14542209 ~ 14545438 (-) False LOC103025073
TU98709 other downstream 3442413 12610834 ~ 12621356 (-) True G73172
TU98667 other downstream 3498803 12564348 ~ 12564966 (-) False fbxo31
TU100463 other upstream 1791392 17877026 ~ 17883786 (-) False nrg4
TU100498 other upstream 1897113 17982747 ~ 18029747 (-) True G74591
TU100745 other upstream 2853540 18939174 ~ 18940464 (-) True G74791
TU100809 other upstream 2985304 19070938 ~ 19072888 (-) True G74838
TU101215 other upstream 3774060 19859694 ~ 19865982 (-) True G75100

Expression Profile