RNA id: XM_007228295.3


Basic Information

Item Value
RNA id XM_007228295.3
length 3848
RNA type mRNA
GC content 0.46
exon number 14
gene id LOC103038359
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 11049697 ~ 11084679 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAGATGAAAAGCCACCTGTCTGACTGGAGAGAGGGCTTTCTCAGTCACTCGCTCTGCTGATGGTCTCAGCTGGCATTATGCTGGATCTAATCTGGCCTGTGACCAGAAGTATTTGTTGGATTATAGGAGCGAGAGGTTGAAGGATTTGAGGAGCGGTTGAGGCTTTCCTTACAATAAGACCAGATTGGAGCTGTTGGACTTTTATCATGTGGAGCAGAGCAGATTGGATATTTGGGGGATTTTAGATGACAAAGGGGAGCTGATGAAGATTCTGAGATGAAGAAAGATATCGAGTTATTAATAGCTGAAGAACGGGCTGAAATCATCTCAAAATATGACAAGGGCAGAACGGAGGACGCGCACATTAACCCTTGGGAAGATGCCAACTACAGCCTTTACAAGGTCATGGACCGCTTCGGCTTCCTGCATGAGAAGGAGTTGCCCACTCCAAGTGCAGTGGAGGAAAAGCATAAGCTTCAGGAGATTGAGAGAGCGGAGAAGTGGCTTAAGATGGTGAAGAAATGGGACCAAAAGTACCATAACAGTGAAAAGATGATGAAGCGTGTGTATAAGGGGATTCCCCTGCAGCTGCGGGGCCAGGCTTGGGCTCTTCTGCTGGAAGTGGAGAAGGTAAAGGAGCAGAATCAGGGGAAGTATGAGGCAATGAAGAAACAAGCCAGACTCCACTCAACAGAGATCAAACAGATAGACCTGGATGTCAACAGGACTTTTAGAAATCATGTAATGTTCATGGAAAGATTTGGAGTCAAgcaAAAAGCTCTGTTTGATGTGCTGACAGCCTACTCTGTCTACAACAAGGAGGTCAGCTACTGCCAGGGCATGAGCCAGATTGCAGCCATTTTGCTAATGTATCTGAATGAGGAGGACGCATTTTGGGCCCTGTCTCAGCTCCTTACCAACCAGAAGCATGCTATGCACGGATTCTTCATCCCTGGCTTTCCCAAGCTACAGAGGTTCCAGGCTCACCATGACCAAATCCTGGCTAAACTCCTTCCAAAGCTCAAGAGGCACATGGATAAGGAGCAGATGACCACGGGTATATACACAACCAAATGGTTCCTGCAGTGTTTCATTGACAGAaCACCTTTCACCTTGACCCTGCGTCTGTGGGACATATACATCCTGGAAGGAGAGAGGATTCTGACTGCTATGGCCTACACTGCCCTAAGAATTCACAAAAagCGTCTGCTGAAGATGTCTTTGGAGGATCTGCGGGAGTTTCTGCAGGAGAgcatctcctcctccttccaCCAAAATGACGATACCGTCATAGAGCAGCTGCAGGCCGCCATGGCTGATCTACGCAAAATGAAGCTGGATCTTCCTCCTCCATCAAAAGGTGATGAGTTGCCGAAGATGCCTCTGGGTGTGGAGGATCCAGAGGATGTTGTATTAACTCCAGTGAAGCCTAAGCAGGATGCGCTCCCTCAGCCAGCCAACCCTCGCTTACCGGAGCCCGTCACCCAGAATCAGaccccctccatccctccagtCTGCCCAGTAATACCATACAGCCAGGCAAATGGTCCAGTACCTCTAATCACAACCTCATATCCACAGCCTGGGTCTGCAGGATCAGAGACTAGAGTCCACAGCCGGAGTGGAGCTGCTGAGAAGAGGCTGGCTTTCCCCTCAGCAGGCGCCACTCTCTCGCCAGACAGTGCTTTTAAAAGACCACCTTCAGTTGACTCCATTCTGCAGGGGGATGCGGGTGACTGGCCACCTCCGTACCAACCTTCTGAGACTGATGTCGCCAGTGTTCACTCTCTAAACTTTCCTGAACTGCCCCCTCCACCTCTACCAGAGGCTGGAGTGGAGCTTTTACCCCTGGAGGACGCCACATTAccgccaccaccaccagcagcatcACTGACTCATCCTTTGGATCCCTGTTCCTCACCATCTTCATACAGAGCCCAGCGGCAGCTCAGCAAGTTCCCCGTCAACTTGTACGTACCCCCTTCCACAAGCGACCGGCGGCCCTCCAACACCTCTCATTACGATAACCTGTCCGAGGAGGAGGAGTCCGTGGAGAGGTTGCTGGAAATTGCAGCTACTCTTCCTCCAAGCCCAGAAACAGGTCGAGGAATCTCCAGCCTCCCCACGCTGCCAGAGGACAGTGCCACCCACCATTGGCCCCAACCACCAGGGTTCTTTTACATCCCTGACTCTgttccacctcctccacctcagCCATACCTCAGTGCATTGCCCCCATTGCCTCAGGAGCAGGACTACCAGGGGCCAGACAGTTGGGTGACTTCAGACTGCGTCCTCCCAAAGCCTCCCCCCGACTTTGCAGACACACCCTCCCCAGTCCCCTCCCCCATGATTTCCTTCAGATCCCACCAGGCAAATCAGAATCAGAAGGACACCTACAGGAACCAGCTACGATCTCCCAAGGTCCCAGtaaaaccaccaccaccagcagctcCATCCCCTACACCACCTCCGGTGTGGCCTGACTCGAGCCTTAACCGGATGCATGTCCCAAACCGCCAGCTGCCAAAGCCAGTGGACCTTCTAACACAGGAAACGTTTGCGGCCTTTGGTGctgctgcaataaaaaaaaaataaaagtcatgtTCGGTCTCTCTGATGTTCAGAACTTTCCAAATGTCAAGCCATCCTGTTAcgttctctcttcttttttcctctcaaaCTGTTGTGATttgtacagcttttttttttacccgtTAAGATTTGATTTTGTTCCTTTTATGGTGGAATTATGTCTAATGTAGCATATTTTTGCCACATTAATGGTGCTTCTATGTGTAATTGTTGTGTGTTTACAGCCACTCAGCAGAAAAGCACTGTTGTTGAGCTTAGATCCGTTTGGCTTGTACCCGTTTTGTGCCTTTTAAGCTGTTTGCTTTGTACAGATATCTATGTAAGACTTAAGACTTTGAAAAAACTCCAAAAATATTTCTAATTTGTACAGGACACCAAAAAGGtcaattacagttttaaaattttCCAAATCTTATTTGCTCTTCCGAAACTCCAGCCAATTAGCATGTTATGCAAAGGAGTCAGACGTATGCATGCTTTCACTCATTCTATAATTTCCTCATCTATAATATGCAGTGTTTTGAGttgtgaaaatgtgtttgaaTGTGTTTAAGTGTGAGTGATGTGATTTGGTTTAtgcagctttgtttttttttgttgttttttatcttCTGCTCACTTTAAAACATGTCCTGTAAAGCTTTACGTACAAATGGCAATTTAATTGTAACAAAAAGAAAGCTTTTTGTCTTTTATGTGgctcatagtaaaaaaaaaaaaaggaaaaaatgcttATATCAGAATGAGCACATCCCCAGTGTAAGAGAGTTGGCTCTAGAAGTTTttgagatttgtttttttttctaatgtattttaaaatgctttaggTCAAGGATTTGGAAATGAATCCTCTAGTAGAGGGATCACAATTTAACAATTTGCTGATTTCTAGCTCCACATTGTGGAAGACAATGTGCAATCTTCCATAAAAACCTCAAATGCTTTGCCTGTAAATGTGTGTTCACAGTGAATTTGTACAGAActtaaacagagagaaaaatattgtgaaaaacattgtattattttatttgcacttttttaaactgtatttaagaGCTTTATGTTTTGTGGTGTTCCTCGGGTGCAGCTGCTTTTCCCTTTGAAAGCAGCTTCCAACCTGTTCCAACCCAAAGATGGTCTTTTGTATTTGGTTGTGATGCTGTGATGACACCATTTAAtgccaaaaatgtttaaaagaaaaaaatgtggtggttttttttcacacagtgtTTTATTGAACATTTACATTATTG

Function

GO: NA

KEGG:

id description
K20133 USP6NL; USP6 N-terminal-like protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98242 lncRNA downstream 11552 11037508 ~ 11038145 (-) True G72847
TU98240 lncRNA downstream 14920 11033157 ~ 11034777 (-) True G72845
TU98198 lncRNA downstream 419873 10629582 ~ 10629824 (-) True G72807
TU98197 lncRNA downstream 420211 10629197 ~ 10629486 (-) True G72806
TU98194 lncRNA downstream 422672 10571164 ~ 10627025 (-) True G72803
TU98254 lncRNA upstream 4696 11079088 ~ 11132273 (-) True G72857
TU98281 lncRNA upstream 150387 11224779 ~ 11225954 (-) True LOC111193093
TU98284 lncRNA upstream 156787 11231179 ~ 11231678 (-) True G72881
TU98401 lncRNA upstream 620286 11694678 ~ 11733149 (-) True G72967
TU98410 lncRNA upstream 659752 11734144 ~ 11734846 (-) True G72974
XM_007228058.3 mRNA downstream 21047 11008621 ~ 11028650 (-) True tmem86a
XM_022672115.1 mRNA downstream 84515 10725524 ~ 10965182 (-) True b4galnt4
XM_022672114.1 mRNA downstream 331713 10630846 ~ 10717984 (-) True abtb2
XM_007228052.3 mRNA downstream 816500 10223118 ~ 10233197 (-) True LOC103047177
XM_007228056.3 mRNA downstream 864851 10166327 ~ 10184846 (-) True lrrc56
XM_022672120.1 mRNA upstream 150428 11224820 ~ 11225928 (-) False LOC111193093
XM_022671911.1 mRNA upstream 447440 11521832 ~ 11545246 (-) True LOC111193052
XM_022672127.1 mRNA upstream 662891 11737283 ~ 11739371 (-) True kcnj11
XM_022672126.1 mRNA upstream 665570 11739962 ~ 11804035 (-) False abcc8
XM_022672124.1 mRNA upstream 665570 11739962 ~ 11804035 (-) True abcc8
TU97707 other downstream 1824138 9222692 ~ 9225559 (-) True G72453
TU97699 other downstream 1875388 9165878 ~ 9174309 (-) True G72449
TU97555 other downstream 2404096 8639538 ~ 8645601 (-) True G72336
TU96981 other downstream 3736771 7309775 ~ 7312926 (-) True G71862
TU96917 other downstream 3992054 7057110 ~ 7057643 (-) True G71826
TU98300 other upstream 446495 11520887 ~ 11545223 (-) False LOC111193052
TU98292 other upstream 446620 11521012 ~ 11545136 (-) False LOC111193052
XR_002650239.1 other upstream 693117 11767509 ~ 11776139 (-) True LOC111193095
TU98666 other upstream 1489956 12564348 ~ 12564798 (-) False fbxo31
TU98667 other upstream 1489956 12564348 ~ 12564966 (-) False fbxo31

Expression Profile