RNA id: XM_015601056.2


Basic Information

Item Value
RNA id XM_015601056.2
length 4501
RNA type mRNA
GC content 0.48
exon number 38
gene id fanci
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 12568837 ~ 12587543 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGATAGGGAAGGGATCAGGCGGGAGTTTTCAGTCGGAGGACGGTGTTTTCCACGGCAGCTGAgaggctctgcagatcctgaaCAGTGTAAACAGCGCTTAACTCCACCAGACAGTAGGTTTTCAGACCTTAGAAGGTGTGCAGCATGAAGGCAGCCATTGACAAGATTCTCTCTTTATCTGAGGGAGATGGTACAAAGGAGCTGGAGAATCACCTCACATCTCTGCCTCAGGACCAGCTGACTGCACTGATCACAAATGCAGCCCTCAAAGGAAAGGATTCAGCAGCGTTGATGAAAGCTATATTCAGAGGCTCCCCAATCAGTAGTACAGATGGGGCTAGTCGCAGGCTATGTGTGTATAAACACTGTATTCCTTTGTGTGAGTCCGGAGACCTGCAGACAGAAGTGGCCTCAGACATTATTGGTCTGCTAATGTTGGAGACACATGTGCTTCCTGGTCCTGCACTGGCAGCATTAGCATCTTTATTTGTGGATGCTATTAAAGTGGGTGAAATGGGTAATGGCAAATCACTGGAGCTGTTCCCCACCATTCTTACAGCCCTGGCAGCGAAAGAAGCCATAGCTTATGGCAAAGGCGAGTTAAGCGGAGATGAATACAAGAAACAATTGATCAATAGTCTTTGTGCAAGCAGGTGGGACCCACAGTGTGTGATCCATCTCACCACCATGTTCAGAGATGTGCCCTTATCTCCAGAGGAGCTACAGTTTTTGATTGAGAAGGTCTTGAGGATGTTCCTGAAGCTGGACCTGCAAGAGATCCCTCCTTTGATttatcagctgctgctgctggctgcTAAGGGGTGTAAAAAGCTTGTGCTGGAGGGAATTATTGCATATTTTAGAGAACAGGACCTGCATCAGAAAAAGGAGCAGAGAGAGGGGGAGAGTATGGATGTTGAGGTACAGACGATCCCACAGGACCAGCTAAGACATGTGGAAGGAACTGCTATCTTACATGTTGTATTTGCTATTCGACTTGACCATGAGCTCGGCAAAGAGTTTCTAAAAAGCCTCAAGgtatCTCAGGGTCAGCCACTTTGTCCCTTTAGCATCGCCCTGTTGCTTTCTGTGGCTCGCATCCAGCACTACCAGGAGCAAGTTTTTGAGTTTCTGAAAGGGGCCATAATTAAGAATTTTAAGGATGAGCAGTTTCTGCATGGGTCTAAGCTCCTACAGGATCTGCTACCCCCCTGCCACAGTATCTCCCAAATGATTCTGGATACGGTCAAAAACAGtgtgtttggCTGGGACCATGTCACGCAGAGCCTGGTACAGTTAGGTTTCATCCTCATGGACTCCTTTGGACCAAAGGCTGGACCTTTTGGGAAGACCATCGAAGCCCCCACTACTGCAGCTAAAACCCCCTCTCAGCTTGCATGTCAACTTGGAGGACAAGTGCTTCTGGAAAGCTTTAAGATGCATGAACCAATCAGAGGGGAGATCCTGGAGCAGGTCCTTAATCGATTGGTCACTAAGACGGCTTCACCAGTCACCCATTTCATTGAGTTGCTCTCAAACATTGTCATGTCTGCTCCAATGATCCTTCTGGAGTCATCCTCAAAAGTGACTGAGACCTTCGACCAGCTGTCCTTCCTGCCTCTGAGCACTGTCCAGGGACTCCTTAAAGCTGTGCAGccACTGCTGAAGGTCAGCATGTCCTTAAAGGATGCACTGATTTTGGTGCTGAGAAAAGCCATGTTCTCTAGTCAGCTGGACGGACGCAAATCTGCAGTGTCCGGCTTTCTCTTGCTGCTGAAGAATTTTCGGGTCTTGGGCAGTCTAGCCCCGAGTCAGTGCAGTCAGGCACTGACCTCTAGTCAGGTCCAGGCAGATGTCCACTCGCGCTACAACTCAGCTGCTAACGAGTCATTCTGTTTGGAGATCCTGAGCAGCCTTCGCCGCTGCCTCGGCCAGCAGGCAGATGTGAGGCTCATGCTTTATgaaGGTTTCCATGATGTTCTTCGACGCAACTCCCAGTTGGCAAGCTCCATCATGCACACTCTTCTATCACAGCTAAAACGATACTATGAACCAGAGCAAGACCTTCTACCTCCTATGAAGCTGGAGTCATGTATAAGTGCACAAGGAGACCAGGTTTTCCTCCAGGAACCTCTGGCTCACCTGTTCTCCTGTACTGTCCACTGCCTGCTGTGGCATCAGAGTTTGGGTGAAAATGCTCGAGGTGGAatggatgatgaagatgatgaggaGGAAGATGAAGGAGGTTTTCAGGATGAGCTCCATGCAATATTGGAGAGTGTAACTAGACGCATGATTAAGAGTGAGCTGGAGGACTTTGAACTGGATAAGTCTGCTGATTTCTCCATGACGACCAGTGTTGGAGTGAAGAACAGTATCTATGCTGTGCTTGTGATGGGAGTATATGAGGTTCTCATGGAGTACAACTTCACCATAGGCAACTACAGTAAAAATCGTTTTGAGGAGATACTGGAGCTCTTTAAACGTTATCAGAAGCTGACTGAGATTCTCAGGGAGAAGTCAGGAAAGGGCCGGACTCCTCATAGTAAACCCCCACGTAGCCTGCTCTCCATGGGATTCGTGTCCACCTTGCTGACTGCTCTCTTCAGAGACAGCGCTCAGAGTCATGAGGAGAGTCTGTCAGTGCTTCGATCCAGTGGAGAGTTTATGCGCTACAGTGTGAACGTGGCCCTACAGAAGGTTCAGCAGCTGGAGGAGACGGGCCACACGGATGGGCCGGAGGGACAAAGTCCTGACAAGGCCTTCCGCTACCTCTGTGACATCACAAGTGTACTGATGTGGCGGTACACTAATATTCCATCTGCCGTTGAGGATACTGGGAAGAAGGAGAAGACTCAGAGCATTTCTCTGCTGTGTCTTGAGGTTTTGCTGCGCGTCTTCAGCACTGTGCTACAGCAGTACCCTTCCAAAGTATCTAACTTCCTGTGCTCTCTTGatCTTTCTGGAGAGGTGGAGGAAGAAGCTGAAAAAGACAGCCTGACTGAAAAGACTGCCTTCTACATCCGCCAATTTCAGCGTTCACTGTTCAGTCAGTTGAGTGGAAGCGAAGAAGATTTTAATAGCAAAGAAGCTCAGCTGCTGGTCAGCATCCTCAGTCTACTCGCTGGCTTGCTGGAGCCCTCCTCTCAACAGTTTGTCCAATTCATAACTTGGACAGTCAAAATTTGCAAAGAAACCAGCTTTGaggACATACCTTTCAGTAGGGGTCTTCTGTCTCTGCTCTTCAGTCTACATGTTCTCTACAAAAGCCCTGTGTCTGTTCTGTGGGAGATGTGCCAGGACATCCATAGTGCTCTAGGAGATATAGACGAGGATGTGGAGGTGGAGAAACAGTCTCACTTTGCTGTTGTGAACACGAAGACTGCAGCTTCCACTACACTCTTAGTCTTGTCCCAGGTGGGAAGGGTGTTGGATGAGGTGGACTGGTTAATTGCCAAGAAGAAGGGCCAATCAACATCTGAAAAGACAGCCTCAGGTGCCACACAGCCGGCCGGTCAGCAGGACCCTGTGGAGAAAGCAGTGACTCTGCAGTTGGGGACTTTGCTGACTGCTCTGAATGAGCTGGTGCAGACGGCTCTACCTACTGGAGCCTGCACGGACACTCTGCTCCGGGAACTTGGCCGAACCTACAGCATCCTCACTACCCTCCTCAAATATTATATACAGGTGTGTGCAACTCATCCTGGCCATCTGCCTGCTCGTCTGGAGAAACTGGTGAAGCTCTCAGGCTCTCACCTCACTCCTCAATGCTACTGTTTCATCACATACGTACAGAGTGAAGAGGGCAACGGGGGAGCAAatgacaagaagaagaaaaagaaagaagaggaagCTGTTATGGCTGCATCTGCTAAAATTATTCGTCAGACTAAGGCCATCCCCTCCCTGATCTACAATATCGAACAGTATGAGAAGTTTCTAATTCTGCTCTCCAAGAAATCAAAGGTGAATTTGATGCAGTACATGAAGCTGAGCACGTCCAGAGACTTCCGGATCAATGCAGCAACTCTACAAACAGCAATGCAGGAGCAGCAGGAGAGCCAGCAGACTGAAGCCTCTCAAGAACCTGAGGAGAGTCAGGCCCccaagaagaagagaagaaagcagTGAGGGtgtccttttcttcttctgttcctTTCTTGTGTGTTTATTCGTCAGTCTGTTTTTCTATGTTCAGTTTCagctttcgtttttttttttagaaggctATTTTTCTTTGGCCAAAGAACCTTTGGTTTTCTCAATGATCTGGTAGATGTCCAGTGCTTCACCTGTTGataaaaaagtgtatatataattaTCAATATGCCAATTTAGATGcatgatttatttatacattgttctctttactttttactgtttaaaaagacACATTTTAGAATGAATTATGTTCCTTATGTTCACAATACTGCTCTTAATATGCTGCTTTCATTTTGAATTTTTGAATGTACATTTTCAATAAATACACTAtgcactctta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98665 lncRNA upstream 4045 12564133 ~ 12564792 (+) True G73146
TU98662 lncRNA upstream 4045 12564346 ~ 12564792 (+) False G73146
TU98580 lncRNA upstream 10985 12557634 ~ 12557852 (+) True G73091
TU98553 lncRNA upstream 112833 12450486 ~ 12456004 (+) True G73082
TU98551 lncRNA upstream 120323 12445693 ~ 12448514 (+) True G73081
TU98715 lncRNA downstream 51702 12639245 ~ 12641822 (+) True G73177
TU98733 lncRNA downstream 76424 12663967 ~ 12669729 (+) True G73189
TU98736 lncRNA downstream 87443 12674986 ~ 12676348 (+) True G73191
TU98768 lncRNA downstream 360103 12947646 ~ 12952320 (+) False G73214
TU98771 lncRNA downstream 360103 12947646 ~ 12952320 (+) True G73214
XM_022672146.1 mRNA upstream 21159 12490584 ~ 12547678 (+) False LOC103039298
XM_022672144.1 mRNA upstream 21159 12490585 ~ 12547678 (+) True LOC103039298
XM_022672145.1 mRNA upstream 21159 12490585 ~ 12547678 (+) False LOC103039298
XM_022672149.1 mRNA upstream 21159 12490585 ~ 12547678 (+) False LOC103039298
XM_022672148.1 mRNA upstream 21159 12490586 ~ 12547678 (+) False LOC103039298
XM_022672155.1 mRNA downstream 92563 12680106 ~ 12715658 (+) False man2a2
XM_007228132.3 mRNA downstream 92567 12680110 ~ 12715658 (+) True man2a2
XM_022672154.1 mRNA downstream 92568 12680111 ~ 12715658 (+) False man2a2
XM_007228135.3 mRNA downstream 92568 12680111 ~ 12715658 (+) False man2a2
XM_022672156.1 mRNA downstream 92576 12680119 ~ 12715658 (+) False man2a2
TU97933 other upstream 2486697 10078579 ~ 10082140 (+) True G72621
TU97487 other upstream 3419418 9142899 ~ 9149419 (+) True G72281
TU96877 other upstream 5683296 6881587 ~ 6885541 (+) True G71788
TU96736 other upstream 6030043 6525641 ~ 6538794 (+) True G71682
trnaa-agc_15 other upstream 6531089 6037676 ~ 6037748 (+) True trnaa-agc_15
trnar-ucg_4 other downstream 15809 12603352 ~ 12603424 (+) True trnar-ucg_4
XR_002650241.1 other downstream 283941 12871484 ~ 12897931 (+) False LOC103043719
TU99159 other downstream 2061286 14648829 ~ 14649551 (+) True G73533
XR_002650242.1 other downstream 2303991 14891534 ~ 14921003 (+) False rpgrip1l
TU99974 other downstream 3699133 16286676 ~ 16288329 (+) True G74169

Expression Profile