RNA id: XM_007228300.3


Basic Information

Item Value
RNA id XM_007228300.3
length 2401
RNA type mRNA
GC content 0.44
exon number 2
gene id gdpgp1
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 12658893 ~ 12661807 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTGATTCAGGGAGAGGTAGCTGCTGCCTCGTTGTTTTGTGCCGGGTGTCTGATTCAGACCTGAGACGTGGCTGGTAGATCGCTTTACAGTGAACAGGGGGGTTAATTTAGGTGTGAGGTGAAATCTGAAGATCTAACGCCCCCTCAGCCTGAAGAGAAGTCATGGAGGGTCCGGTTAGACCCGTGTTTACCTACACTCAGCAGGACTTCGTTCACCAGGTCTACAGGACGGGCGGAGAACCTGAACACAGCAAGTTTGACCTCACTCTCAGGTCAGGCTGGAAGGAGAAGATGAGCCGCGGTCTGTTCAGATACCACCTGGGGGAGCTGGAGACGAGGCTCCTGCCTGGGGAGGGGGACTATGTTGCCCAGCTTAACATCCAGAGGGGCATAGAGAGGAGAAAACCTCAGGAGATCCTCAGCATCAAGCAGAACTTCGACCCAAAACTCTTCAATTTCAACAAGATCAACCCAGAGGAGGTACTGTTTGAAATGTGTAGCTGTGGAGCTGACCCAGGATCAGATGACAAAGGGAAGTCAGCTGAGACCTGTCATCAGAACGGGTTGACCACAGGGTCGTGTATGGTCATCATAAACGTGAGCCCCCtggaattgggacacagcctgctAGTGCCTGAGCCAGCCCAGTGCCACCCCCAGATCCTGACTCCTCTAGCTGTCCAAGTAGGGATAGATTCGGTGTTCCTGAGCGCTGATCCAGGGTACCGGGTGGGCTTTAACAGCCTAGGGGCCTTTGCTTCTGTCAATCACTTACACCTGCATGGATATTATCTGAACCACACACTGAGGCTAGAGTGGGCGCCCACAGAGCCCCTAGTCCCAGAGAAGTGTTTATACCAGCTCACAGGCTTCCCCCGTGCCTTCATGATTTACACCGAGGGCCAGGACCCCAGGGTGGCGGCCACAGTCACCTGCAAGCTCACAGACATCCTTGTGGATAGAAACATTGCACATAATGTGTTCATGAGCCGGGGCTGTCCACCCAGCAGCAAtaacagcagtagtagcagcagcgaGGCTGTGCCCTCAGGCCTCAGGCGTGGGGTACGGATCTGTATCTGGCCCCGGGTCTCCTGTTTTGGGGCAAAAGAAGAATCAGCCTTCAAtgtggctctgtgtgaactAGCAGGTCACCTGCCCTTCAAAAACAGAGAAGACTTTAAAGACATCGACGAGGATGGAGTTAAAGCCATCGTCCAGAGATACGTCTTCAATGACCAGGAGTTCAGTGACCTGCAACAAGAAGTTGTTGGACAGCTGTGTGAAGTAAATGGCGTAAAGTAACAAAGTGCCCAAAATAATTTCCAGTGGAAGTCAATATAGATAATTTTtgcaattattaatttaaaagcttaaATTCAGCACTGCCAGATGTGGAAAATGTGGCAAAATGTAGGTTTTCTGTGACaatgaaatacaataaaatacaatctgGAAACATTTAGGGACATCCCTGTTGTAAAATCCAACTCAAGGCCAGTATTATCTGGTTGCAAGCTGGTTTTCGATGGTTTGAGCTGGTGTTTGGTGGTCAAGATGGATAAAAATGTTGTCAACAAGGCATTGTACACTACACTTGTCGAGAGATTGTTAACTAACTAGCTTCCCATGATAGGGTTTTAGATATGATGCTGGTCAACTAGTGTGGTCAATACAAGGATGTTTTTAAAGCAAAACTAGATATACAATGTTTTCTGTCACAGACAAAATATATAACCTGGACATACATACttagttattttattagtagtagtattttattagtagtattttaaattgtttaaactCAGGGTGTGCCAATTGCTTGTTATTCATAATGGAAATGTAGGTTTATGAGGATGtgatgtttgttttctgaactctgtGTTACAACATTGCCAAACTATTATCTACCACTCTCCTTATGTTATGTTCtgttaaaaaacactaaaatcaaTTGTGGCCTTTATTTATGGCTGTGCCTTCTAAGTAATTCATTTACCTACTTTAACTTGAACTCATTGCTGACACATGTACAAATGCACATGTACAAATGCACAGACAGCTTGTTTAGTCCCTGTGGAGAAGTTCTGCCAATAGAAACTGAATGTAAACATGAGCTGAGAAGAGTATGAACCTGTAAGctgttgagctgtggagcagtgaactTATGTTCTCAGGAATGATGTCGGTGTTTAGAAAGTGTGTGCACGCATATATGTAATTGTTTTGTGCCTGCATTATTATTGGTcacaagaaataaaaacagggGGAAGCTTAGGATTTTTTTGTTCTCatgtttttgctttgtttcttAAGCATGTAATAAGCACACAATTGGACCTTTTCATTTTGTATGATTGTTGTTCAGGAATAAAATATCTAAAGAAGTAAAAATCTTA

Function

GO: NA

KEGG:

id description
K15630 VTC2; GDP-D-glucose phosphorylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98713 lncRNA downstream 34475 12621682 ~ 12624418 (-) True G73176
TU98710 lncRNA downstream 38380 12613606 ~ 12620513 (-) True G73173
TU98694 lncRNA downstream 76439 12578858 ~ 12582454 (-) True G73162
TU98688 lncRNA downstream 84309 12573311 ~ 12574584 (-) True G73159
TU98615 lncRNA downstream 128623 12515554 ~ 12530270 (-) False G73119
TU98799 lncRNA upstream 199306 12861113 ~ 12861628 (-) True G73238
TU98850 lncRNA upstream 327379 12989186 ~ 13088436 (-) True G73281
TU98871 lncRNA upstream 576146 13237953 ~ 13238314 (-) True G73302
TU98894 lncRNA upstream 754850 13416657 ~ 13417462 (-) False G73322
TU98895 lncRNA upstream 754850 13416657 ~ 13417462 (-) True G73322
XM_007228128.3 mRNA downstream 6977 12638871 ~ 12651916 (-) True rhcg
XM_022672152.1 mRNA downstream 56652 12587239 ~ 12602241 (-) False polg
XM_015601058.2 mRNA downstream 58244 12587239 ~ 12600649 (-) True polg
XM_022671915.1 mRNA downstream 93915 12548690 ~ 12564978 (-) True fbxo31
XM_007228123.3 mRNA downstream 169713 12485646 ~ 12489180 (-) True LOC103039697
XM_007228127.3 mRNA upstream 934 12662741 ~ 12674522 (-) True unc45a
XM_007228136.3 mRNA upstream 60470 12722277 ~ 12871382 (-) True LOC103043208
XM_022672158.1 mRNA upstream 60470 12722277 ~ 12765815 (-) False LOC103043208
XM_007228148.3 mRNA upstream 282646 12944453 ~ 12949439 (-) True rag2
XM_022671890.1 mRNA upstream 1171746 13833553 ~ 13848142 (-) True LOC103022766
TU98709 other downstream 37537 12610834 ~ 12621356 (-) True G73172
TU98667 other downstream 93927 12564348 ~ 12564966 (-) False fbxo31
TU98668 other downstream 94019 12564348 ~ 12564874 (-) False fbxo31
TU98666 other downstream 94095 12564348 ~ 12564798 (-) False fbxo31
XR_002650239.1 other downstream 882754 11767509 ~ 11776139 (-) True LOC111193095
TU99163 other upstream 1880402 14542209 ~ 14545438 (-) False LOC103025073
XR_002650248.1 other upstream 3099957 15761764 ~ 15778423 (-) False LOC103046265
TU100463 other upstream 5215219 17877026 ~ 17883786 (-) False nrg4
TU100498 other upstream 5320940 17982747 ~ 18029747 (-) True G74591
TU100745 other upstream 6277367 18939174 ~ 18940464 (-) True G74791

Expression Profile