RNA id: XM_007228304.2


Basic Information

Item Value
RNA id XM_007228304.2
length 2175
RNA type mRNA
GC content 0.42
exon number 3
gene id LOC103041151
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 14574795 ~ 14578518 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTTTGGCAGGAAGGCACATGTGCATAGACACTCACACAttcaccccaacacacacacacacacacacacgcctgtTGAGCATGCAGCACTCTCTCTAATTTTTCCTGCTCATTCTGTTACACTGGCTAGTGGACTACTGGGCAGCATCAGAGACACCCACACCTTGGAGTGAGTGCCATAAATCTCCTTCAGCACCTGAGCTTCCAGCAGCTTCACCTCCTGTCATTCTTTCACTCCAGCAGACACCTGAAGGCACAGAAGAAGACTTCACCTGAGCTTGACTGAGGGATTTCTGGACGTTCTACTTTGGGAAATGCTGCCATTCATCTAGCAACTAACTAAAGAGACCCAGACATGGTTTAGTAAAGACATGTTTGAGGTTTTATGCTCTGCAGCAAGATGGTCAACAGATAATCTACTGCAGGAGAATACATATGAGTCTTCTGTTTTCTGGATAACCATGATGTTGAGGCAGTGGAGCTTTGCTGTGCTCTTACTGTGCATCCCTCTACCTGTTCAAGGGAGACCCATCCAGGCTCTCAGCCACAGACTGAGGCGATCTGTGGGTCACGCTCAGCTGATGCACGATAGAGGACGGTACCTGCAGGAACGGAAGAGGCGTCTGTGGCTGCAGGAGCTTTTCAAGCAGGTGCACACTGCCAATGTATGGGACACTCCCTCAGACAGTGACGCTGGCCTCCACGCTGTTACCTGGGGTGCCCACAGCTCCAAGCCTGCCAGCAGCACAAAGGAGTTTCCTGTAGACTTTGAGCCAGAGAGCACAGGCAGCAGTGACACTCTTCTGCAGGAGACCAACAAGGAGCAGACTCTGCAAGGTGCtgcaaagagaaagaagagagtgtGCCTGGGGAAGTGGAGAGATGGCACAAGAAGAAGAGGATGGCCATGCTTAGGCTACAGCTCAGGACCAATGAGAGGTCCATGACCAGAGAGACCTATTGGCAGATTCAGACAAGTGTGCAAAGAGCCATCAACCCCTCTGGTGTCTGGACAATTGCTTCTGAACTCTTCTGCTAATGTCTGTGACCAGCAGAAAtaaagtacagtactttataaTGATGTGTTGCATCATCTCATGCACTGTCTAAAGACGTAGAGGTGTTTAAACGTAGTCCAaagattcttttttttggaaatgtcaATAGTGATTTACCATTGAATTTTTTTCAGTCTATTCAGTTTATTCTTAATCTGCTTCTGGACCATAGGATTTAGACTAAGCTCATGTTCACACCTGGTCACTTAAAATAGCTCATATCTGGGTTTTATACTAATTCGATTCTGGCCACATGCCTCTATTTAAACTTGGTAGTCCAATGTGTCTCCAGTTAGTTAGACTGTAATGCGTTTGACGAAATATGCAAACTCTCTTGTTAAACAGCAAATATTACTACTGTTTCAGTTATACTGCAAAGAGTTTTGGTTGTTCAATTGTGTAACACGTGGCTTAAATGTGTCTCTGACCTCCTGTTtgattgatcagatttgtatccgTTGTATGTGTgtcttgggtgtgtttacacttgatTTTAATAAGACTCGGCCTAATTCAGATATAATCTTGGACCCAGTTTCCCAAAGGATGTTTACATACAGAATATCTTAACATGGGGAGAGAGAGTACTTAGTATGATGTGCACTTGACCATATAAGAATCATGATCTAAGAAACATCTTTGTGCTAAGAAGCTTTTAAGAAACCCACCCTCACCCCCCACTCAAGCCAGTAAAGgggccaggtgtaaacagggtctaaaCACATTGCCAAACACAGCAATTGAAGCCTGACAATACAGATACAAGTCTggtttctgtattttatatggAAACAAAATCAagattcatttcattttatataactaaacaaactaaactaaatccaTACatctttgcatttatttatttgattagaaAGGTGAATATTTATTCTGTGAATGTATCACAATGCTGCTGATTTTTCTACAAGTTTCAGACAATGCACTTTAGACAGCTGTGCTATACGCCTGTACATCAGTATCTTTAAATCTAGTGTtttcttcagtgttttgttttatgtcttCCTTTTCCGTTTTGGTACAGAAATACTGTAGATATGGCTTTCTGCCTTCAATTTCTTTAAatcttttcaataaaaaaaagatgagcaataaCAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99124 lncRNA downstream 106654 14467622 ~ 14468141 (-) True G73509
TU99102 lncRNA downstream 297689 14276679 ~ 14277106 (-) True G73491
TU99032 lncRNA downstream 502757 14070499 ~ 14072038 (-) True G73434
TU99030 lncRNA downstream 536427 14038069 ~ 14038368 (-) True G73432
TU99027 lncRNA downstream 567646 14006752 ~ 14007149 (-) True G73429
TU99167 lncRNA upstream 19433 14597951 ~ 14605960 (-) False G73540
TU99170 lncRNA upstream 19936 14598454 ~ 14605960 (-) True G73540
TU99251 lncRNA upstream 97363 14675881 ~ 14676858 (-) True G73606
TU99248 lncRNA upstream 130543 14709061 ~ 14797283 (-) False hbp1
TU99266 lncRNA upstream 166652 14745170 ~ 14748658 (-) True G73617
XM_022672170.1 mRNA downstream 574 14566910 ~ 14574221 (-) True LOC103040849
XM_007228164.3 mRNA downstream 19840 14550872 ~ 14554955 (-) True cib1
XM_007228165.2 mRNA downstream 29259 14542196 ~ 14545536 (-) True LOC103025073
XM_022672168.1 mRNA downstream 114407 14390685 ~ 14460388 (-) True LOC103024229
XM_022672165.1 mRNA downstream 610769 13920173 ~ 13964026 (-) False pamr1
XM_007228175.2 mRNA upstream 35873 14614391 ~ 14619388 (-) False LOC103028140
XM_007228176.3 mRNA upstream 35873 14614391 ~ 14619171 (-) True LOC103028140
XM_007228172.3 mRNA upstream 61483 14640001 ~ 14649251 (-) True gpr22
XM_022671917.1 mRNA upstream 109171 14687689 ~ 14690107 (-) True LOC111193055
XM_007228180.3 mRNA upstream 130540 14709058 ~ 14717691 (-) False hbp1
TU99163 other downstream 29357 14542209 ~ 14545438 (-) False LOC103025073
TU98709 other downstream 1953439 12610834 ~ 12621356 (-) True G73172
TU98667 other downstream 2009829 12564348 ~ 12564966 (-) False fbxo31
TU98668 other downstream 2009921 12564348 ~ 12564874 (-) False fbxo31
TU98666 other downstream 2009997 12564348 ~ 12564798 (-) False fbxo31
XR_002650248.1 other upstream 1183246 15761764 ~ 15778423 (-) False LOC103046265
TU100463 other upstream 3298508 17877026 ~ 17883786 (-) False nrg4
TU100498 other upstream 3404229 17982747 ~ 18029747 (-) True G74591
TU100745 other upstream 4360656 18939174 ~ 18940464 (-) True G74791
TU100809 other upstream 4492420 19070938 ~ 19072888 (-) True G74838

Expression Profile