RNA id: XM_007228306.3


Basic Information

Item Value
RNA id XM_007228306.3
length 1286
RNA type mRNA
GC content 0.53
exon number 1
gene id LOC103041761
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 15662002 ~ 15663287 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cTTTCTTTTTGCAGGCGGACACTGTGTCCTGCAGTATGACGGCTCCTGGTCAGGGTGTCATGCGCTTTGTCCAGTTCTTTCTGATGCCGGGCTTTTTCTTAGGAGTGCTGATTTTGGGCGTGCCTCTTAATGTCTTCTCTCTGTGGGTGTTCTCCCGCCGCCTGAGCCGAAGTAACCGTACCATCCTCTTCCTGCACAACCTGGCCATGGCTGACACCTTCTGGCTGCTGGCCTTGCCATTCCTCATCCAGTACCATTTGGTAGGGATGCAGTGGTCTCTGGGCCTGCCTTTTTGCAAGGTCATCCGTCTCCTCTACCACAACTACTTCTACCTCAGTATATTCTTTGTGACATGCCTGAGTGTTGACCGGTACCTGGCTATCGTCCATCCCCTTCGTTCACCTGTTCTCCTCACTCGTCGACGTGCCGTCATTTTATGCATCAGTGTTTGGCTGTTGGCCTTAGCTCTGAGCATTCCAGTGGGCCAACTGACCTACACCTCTCACTGTGAACACAACAACAGGACAGTCTGCATCATCTACGTCTTCATGGATGAGTTTAATGCCAGCCTGTTGTATTCCCTGAGCTGTTCATGCCTGGGGTTCTTTTTCCCCTTCATTGCGCTCAGCTACTGCTACATCCACAGCGTGTGCCACTTGCGCAGGAGGGCCGACCCCCGCCTCAGAGGCCTGGCCTGGGAACTAGGCGTAGCCATGGTCATCTTCGGACTCTTCTACCTGCCCTATCACCTAAGCAGGAATGCAGCCATTATCATGACAGCTCTGGTTCCCCAGGACTCCTCAGCGAAGGAGGCGGCCTACCTGGCCTTCTCTCTggagatgtgtgtgtgcagccTGTCCTCCTGCACCAACCCTCTGTTCAGCTGCTTTGCAGGAAGGCCCGTTCGCAGGGAGCTGAGGTCCACTCTCATGAGGCTGTGGAAAAAACGCAGAGTGGAGCCTCAAACGAAGCAGAAGAAAGAGGAGAGGAACACGAGTGAAGTAAGCACTGTGACAGCCAGCAAGGCAGAGACTGGTGCTAAGATCAAACCCTGGAGCAGCACAGTGACTGTGAAACTGGTTCACTCGAGGGGTCTGGTGTCGACTCTGACAGCTGAGGCACAGAGCAGATGATTCAGATGCTTCCAAAGAGCCTTAGTGATGAGACTAGACCAGTCTTATAGCTGTGTGATGGTCTGTCTCCCAGTATTAGACGCTGTTGGAAAGTGTTGCAGTATGGACATTTAATATACAAGTTCTTGTGGATCAGTCCTTTTGCTCTGTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99658 lncRNA downstream 17750 15643821 ~ 15644252 (-) True G73910
TU99622 lncRNA downstream 84504 15572334 ~ 15577498 (-) True G73877
TU99607 lncRNA downstream 133540 15448674 ~ 15528462 (-) True G73870
TU99834 lncRNA upstream 190015 15853302 ~ 15953813 (-) True LOC111193099
XR_002650249.1 lncRNA upstream 264197 15927484 ~ 15952104 (-) False LOC111193099
TU99883 lncRNA upstream 440329 16103616 ~ 16108725 (-) True G74091
TU100007 lncRNA upstream 539237 16202524 ~ 16215525 (-) True G74199
TU100011 lncRNA upstream 555809 16219096 ~ 16222273 (-) True G74202
XM_022672189.1 mRNA downstream 1169 15645079 ~ 15660833 (-) True slc17a6
XM_022671919.1 mRNA downstream 37085 15621981 ~ 15624917 (-) True LOC111193057
XM_007228227.3 mRNA downstream 40145 15581036 ~ 15621857 (-) True gas2
XM_022672191.1 mRNA downstream 48986 15581036 ~ 15613016 (-) False gas2
XM_007228225.3 mRNA downstream 90462 15566382 ~ 15571540 (-) False LOC103042382
XM_022672188.1 mRNA upstream 3062 15666349 ~ 15710606 (-) True ano5
XM_007228231.3 mRNA upstream 3062 15666349 ~ 15710605 (-) False ano5
XM_007228232.3 mRNA upstream 5187 15668474 ~ 15687243 (-) False ano5
XM_007228233.3 mRNA upstream 5187 15668474 ~ 15684616 (-) False ano5
XM_007228238.3 mRNA upstream 95016 15758303 ~ 15780678 (-) False LOC103046265
TU99163 other downstream 1116564 14542209 ~ 14545438 (-) False LOC103025073
TU98709 other downstream 3040646 12610834 ~ 12621356 (-) True G73172
TU98667 other downstream 3097036 12564348 ~ 12564966 (-) False fbxo31
TU98668 other downstream 3097128 12564348 ~ 12564874 (-) False fbxo31
TU98666 other downstream 3097204 12564348 ~ 12564798 (-) False fbxo31
XR_002650248.1 other upstream 98477 15761764 ~ 15778423 (-) False LOC103046265
TU100463 other upstream 2213739 17877026 ~ 17883786 (-) False nrg4
TU100498 other upstream 2319460 17982747 ~ 18029747 (-) True G74591
TU100745 other upstream 3275887 18939174 ~ 18940464 (-) True G74791
TU100809 other upstream 3407651 19070938 ~ 19072888 (-) True G74838

Expression Profile