RNA id: XM_007231189.3



Basic Information


Item Value
RNA id XM_007231189.3
length 6629
RNA type mRNA
GC content 0.43
exon number 30
gene id LOC103031630
representative True

Chromosome Information


Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 26891876 ~ 26958394 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


TCCCCCTGATTTTGTGCTGCTGTGGCACTGCAGTTGTTTCAAGCAGATCAGACACTTTATAGCAAGCGGTGTTgaccgacacacacacttatacacacacacagatatacacacctACACTGACTGACCTACACATATACACTCCCATGGAGTATTATCCTATCCTACTGCTTTGGACCTGCTTCTTGTTCCCAGgGAACAGGGACTGCTTCAGTATTGACACGAAGAATGCCCAGATTATCCGAGGTCCAAAAGAGGCTCAGTTTGGATACACAGTACAGCAACATGAGGCTCTTGGTCAGAAATGGCTTCTGGTTGGAGCTCCGTTTGAGAAGACTGGTGAAAATCAGACTGGTGACGTGTACAGGTGTCCACTGGAAAGCAGAACTAATGCAAAATGTTCACGACTGAATTTAGGGGAAATATCCCTGAAGAATGTAATAGAACGCAAGGACAAAATGAATCTGGGGATGTCCCTGGCCTCCAACCCGAAGGATAACAGTTTTGTGGCTTGTGGTCCATTATGGTCGTATGAATGCGGCAGTTCCTTGTACAGTACAGGAATCTGTTCCAGAGTGGACAGCAGTTTTAACTTTACGCGCAGTATCGCTCCAGCCTTTCAGAGATGTGAGACATATATGGATATAGTAATAGTGCTGGACGGATCAAATTCTATATATCCCTGGTTTGAGGTGCAAGATTTCCTAATCAACATCCTCAAGAAGTTTTCCATTGGGCCAGGACAGATCCAGGTTGGAGTGGTGCAGTATGGAGAAAGAGTGGTTCACGAGTTTCAACTGGATGACTACCACACTGTAGATGAAGTGGTGTCAGCAGCTCAGTACATTATCCAGCGTGGAGGAGAGGAGACGCGCACAGCACTTGGAATTAATGTTGCACGGTCTCAGGCATTTAAGCGCGGAGGGCGTCCAGATGCTAGAAAAGTGATGATTGTGATCACTGATGGGGAATCACATGACAGCCCAGACCTACAGAAAGCTGTggaggagagtgagagggaCAACATCACCCTGTACGGAATTgcaGTGCTTGGCTACTACAACCGGCGTGGGATCAACCCTGAAGCCTTCTTAAGAGAGATCAAATTGATCGCCACCGACCCTGAGGAGCATTTTTTCAATGTGACGGATGAGTCTGCTCTGAAAGACATCGTTGATGCCCTGGGAGAGAGGATCTTCAGCTTAGAGGGTACAAACCAGAATGGAACTGGCTTTGGACTACAGATGTCTCAGGCAGGTTTCTCCTCACACATTGTAGAGGATGGTGTTTTGGTCGGTGCTGTAGGAGCTTATGACTGGAACGGCGCTGTCctcaaagaaacacagaatggCAAAGTAATCCCGCCCAAGTCGGCATACCTCAAAGAGTTTCCTGATGAGCTGAAGAACCATGGAGCTTACCTGGGCTATATTGTATCATCCATCGTGTCAGCGTATTATGGACAGCTGTATCTGGCTGGAGCTCCTCGTTTTAACCACACAGGCAAAGTCATCATCTTCACCCTTACTAACTCGGGAAACCTCACCATACTACACTCTCTAATAGGGGAACAGATTGGCTCCTATTACGGCAGCGAGTTAGCTCCACTAGACCAGGATGAAGATGGAGTGACTGATCTGCTTCTGGTGGCAGCGCCCATGTTCTTCAGTAAAGGCTGGGAGAGAGGGAAGGTTTACATCTACAGGCTGAGCCAACAGGGCCACTTTGAACTGGAAGGGTTTCTGGAGCCATCAGCTGAAGCACTGAACTCACGTTTCGGTTCGGCCATGTCCTCCTTGCCTGACTTAAATGGTGATGGTTACAGAGAGTTGGTGGTGGGTGCACCTCTGGAGAATGACCACAGGGGGGCAATCTACCTCTTCTACAGCCAGCACAATGGTATTCACCCAAAGTATAAGCAGAGAATATCAGCTGTGGACATTTCTCCAGGCCTTCAGTATTTTGGACGCAGTGTCCATGGTGTGATGGACATAAATGGAGACGGTTTGATAGACCTGTCTGTAGGTGCACTTGGTGCTGCTGTCTTGCTCTGGTCTCGCAGCGTGGTCCGTTTACACATAGCTGTTGACTTTGAGCCATCAAAGATAAACGTGTTTAACAAGGACTGTGTGCGAGGAGGCAAAGAGGTGACGTGCATGGCAGCCAAAGTATGTGTCACTGTCACAGCTCGAACTGCAGTGGCAGAGCCACAAGAAGTTGCTCTTAGGCTTAACTGGGGGTTTGATGAAAGGCGGTACAGCCCCAGAGCCGTGCTGGATGCTGCTGAAGgacaaacatttttagacatcTCTGTGCTACCAGGAAGCCAGCACTGTGAGCATGTCTACTTCCATGTGCACGACACTGTGGACTACACTCGGCCTATAGTCTTCAGTGTGGAGGTGGGACTTCAAGACCCTGATCATGGTCCGGTGCTGGATGATGGCTGGCCCACTGTACTGCGTTCAGAGCTGCCCTTCTGGAACGGATGTGATGAAGATGATAGATGCGTTCCTGACCTTATACTTCAGAGTAACACAGATCTGCTGGACTGTAGGCAGTTCTGTGCCTGGCCGGAGCGTTCCGCATGGCCATTGTGTGTCCAGCAGGAGGCGTGTGTGAATATTGAACGTGTGGTGGAGGCCAGCAGAAAACGAGTGTTGGTGGAAGTTCGACTGGAAAACAGAGGAGAAAATGCTTATAACACAAGGCTCTATATGTCTCACTCTGAGAACCTGCACTTCTCCAGCCTGATAGTGAAGGCTCCTTCTGACCTAGCAATCAGGTGTCAGGCATCAGACAGACTGAGCTTTCAGAGAAGCTGCAATATCAGTGCTCCGTTTATGAGGTCACAGACCCAGGTAAATTTTCGGTTGGAGTTCGAGTTTAGCAGAACGACCTTCCTAGATTATATACAAGTTTCTCTTAAAGCCTCCAGtgaTGGTGAAGAAAGGACTGCAGACGACAACATCAATGTTATATATCACCCACTGAGAAACGAGGCTGATCTCCTCTTTACAAGAGATTCTAATCCACCTCGATTTGAAATCAAATCTGATTCTCCCAATGGGTATCCAGGAGTTATTGGTCCCACCTTCAATCTGTCTTATCAGCTCCAGAACCTTGGTCTGTTCCCCGTGACCGACCTCCTCTTCACTCTAGAGATCTTCGCAGTGACCAGAAACATCAATCAGCTTCTGTACATTTCAGGCATTAATGTTGATCAGtCAGCTGGCTCAGAGTGCATTGCTCCACGTGTCATTGCAGCAGGTCTGCCCTCTGAAGAAGATCTCACGCTCACACCACAGCTGAACTCATCAACTGGTCGAGCGCTGTCTGCTGAGTGCAGGGTCTCTCTGCTGCCCCAACAGGACATCAGTGTGACTGTGACGGGATGGCTAAACCTCCACACATTGCTGACAATAAACTTCAAAGCTCTGGAGTTGGTGATGACAGCAGCCATTGAGTTAAACCCAAACAGTCAACTGTTCCTGCATGAGGACAGACCTACAAGACATATAATCCTGGAGATTAGGAAGGATGAAGATTACAGAATTCCCATCTGGATTATAATCGGAAGCACTTTGGGAGGCCTGCAGCTTTTGGCTCTGCTAGTTCTGGCACTCTGGAAGcTGGGGTTTTTTCGAAGGCAGAGGCGACACAAGGAAGAGCAGGATGCCAACGAGAAAAGCAGGGAGGAGCGGTAAAGCCTTGGTGTGCTCACTCCTTCAAGGACTTTCACTCAGGGACTCTCCAGGAAGGAGGACATGTCTTTGCAGCACTACAGCCTATCAGATCCTGTCATGCACTGCTGAGCCCGCCCACTTTCTGACAGGAGAAGTCAGCTGTCGGTTTGCAGTGCTGCAATATGAACATGGATCTCTAAGAAGTTGTAACTTATGACCGAAGACTTAAAGGTGCCATAGAATGcatttattctgtgtttaaagttgttaatggctgtatatacagtatattaagtgTGAGAGTTTGGTTTGGGAGTAAAATGCacagatatgtttttttatggtcatttgcaaccctgttattttgcctcagaTTGAAAACacccttttcttttttggacTTCTCACTGCAATGGCTCACAGAAAccacatagcatagcatagccgTTTAATACCACTGTAAGACGAATACagtattgtgattattttttgttttgttttgttttcctaagTGTTACCGGATAGAGTTCGCAGTGTGAATCAGGACTGTTAGGTAACAGTTATTGGGTCTCATCTCTGCCAAGATAAATACAGCTTTCCATTTAAAGACAATTTTTAAGGACCACTGTcagatttcatttaaatataagaGTGCTGTGGGGAAATACGCATACACTTTACATAAAACGTACAGTATGTTATAGACTAAAGAGCAGCAGAAAGAGGCTTAAATGAAGTCTGTTTAATACTCCACAACTTGAGCATTATTGCAATGACAAATCAAGACTTGATACTTTTaagaacattattttttatcaacaAGTCCATGTTGATGCACTTACACATATACACTTGAACTTggtgaacaaacaaacattgcCTTGTGAAATACAGCAAGgtgatctaaaataaaatactctaaatatataatataaccaTGGGGACGTCGCTGTGCACACAAATACAATGCTGCTTTGCACATTACATGGACTTACGCTCCTCAATAGGCTTCTAAACTTTTATTCTAAGAAGTTCATACAGTTTATTTAATCTCTGGCCAGCAATTTACCCTTATTTGTGCTCAACAACACAGCAAACAGCAAATGTTCAAATCATAGCAAGCCATGGCATGACAAGACAAAGGATTAGATACAACAAAGACTAATTAGTAAACCACAGCATGCCAGTTGGAGCATGCAGCTTGTTAACATTAGTGTATATTGAACCGAACAAAATGAAGTAAATCTctatggctacgttcacattacaagccacattgctcaaatctgatttttttgctcagatgaTCTTGATGATGTAATCTTGAtgattcacattcacaaatgtaagtcatctgtatctgtgtgtaatgtgaaccaATCTGTCTCTGAAACAtctcacatgcacacattgatAAGTGTATAAACGTCAAAAAAACGTcgtatttgagagacgactcgtagctttataaaggtgaaatggatgagttagcagctcatatgtggagcatcttttgctggtgTGGAGTTTAAACAGCTGGCCTGAATTTCATGTTCatgtcgaggaggtgaaaaaaagatcaggtggtttgcttttgctgtttttgcagctatagctgcacagctgcaccaagagatgtgagGATATGAGAGAGAAGCTCGTAGCACATGCATAAAAGAAAATTcagatttgactgttcacattcatgtcgcaggtccatggatcggatacatatccaaattaggaccacatatgaaagtgactcaaatctgataaaaaaaaaaaatcagatttagcacgttcacacagccatgaaaaaaaaatctgatctgagccacattgagcaaaacgtctaatttgagtcacttcagcctggtaatgtgaacatagcctataTGTACATGAGAGcaccattttattatttagtctACTGGAGCTAATTTGAATGTGATTCTCATATGTTGaagaaaacataataaagaaatgttaatttaataaaagtttttagaAGTACAAGAAGCAGGTGTAGATGGAGAAATGTAGGGAATATCTTAtgattaaaattgattaatGTATTTGTACAAGTAAAGACAAAGTAAATAAACTTGGTTCAAACTATTGCAttggagtcttttttttttttttgcattctgtGATTtctaaaaacacattcaaaatTGCAAATAAGTTATAGACCAACAAAGTTATTGGCTTTGTACGAATTGAATAAActgaatttaataataatgtactttGTGTATAAAAAGGTTGGAGTATCAAACAATATTGGGCAGATAATCTTCCTCTGGTAGAAATGTCATGGAACAATGACgtgaattttccttttattttaagGCCCAAAGACAAAGTTTTGCAGTACTTAAGTAGGCTTGTGGCTAATGTGTGCAAATGTACTGGTACACATACTTAATGAACTGGCTGAGCCCCATATGTTATACAACAATAGCTGTACCACAGAAAACTACATGCAGCAAAGAAAAGGACGAAGCACcttatgtttgtgtttaatgttggtttatttaatttgtaaataataatttcactGACACATTACAATCACGGTTTCTCAAGGACATGAAGCAAAGTCATCATTTAAATCCTCTTTCCAGTCAGGCTTGCAGACTCAAATCTTCAttatcacactcacacagacaagCGTATGCAAACTGAAGAGGGAAGacatgctctttctctctcagactcaaGTAAAAACATCCGAGCACCATCCTGATTAAGGCCCATGAGACAATACAGCCCACAGAAACTGAGCTTCTGCCCCCAAAACTCTAAAACAAGTCATCACCAACGATTctctaaaataatttaaattggcATAGTGGTTAAAGGAAAAATCTGgtggaaaaattaaataaaacaagggATTTAAACAACCTGTCCCAGGCACATTTTAGTgtacttaaa

Function


GO: NA

KEGG: NA

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
XR_002650279.1 lncRNA upstream 206198 26683888 ~ 26685678 (+) True LOC111193118
TU103618 lncRNA upstream 206248 26684068 ~ 26685628 (+) False LOC111193118
TU103615 lncRNA upstream 211986 26679640 ~ 26679890 (+) True G76838
TU103610 lncRNA upstream 320477 26571180 ~ 26571399 (+) True G76833
TU103397 lncRNA upstream 745124 26145625 ~ 26146752 (+) True G76655
TU103729 lncRNA downstream 41800 27000194 ~ 27000955 (+) True G76931
TU103740 lncRNA downstream 89191 27047585 ~ 27047821 (+) True G76939
XM_022672443.1 mRNA upstream 321161 26515189 ~ 26570715 (+) True mon2
XM_022672444.1 mRNA upstream 321161 26515189 ~ 26570715 (+) False mon2
XM_022672441.1 mRNA upstream 377855 26490616 ~ 26514021 (+) True LOC103027405
XM_022672442.1 mRNA upstream 380595 26490615 ~ 26511281 (+) False LOC103027405
XM_022672440.1 mRNA upstream 407695 26475507 ~ 26484181 (+) False LOC103027718
XM_007231191.3 mRNA downstream 10242 26968636 ~ 26982403 (+) True LOC103032468
XM_007231192.3 mRNA downstream 28150 26986544 ~ 26999262 (+) True LOC103032770
TU103131 other upstream 1595408 25294501 ~ 25296468 (+) True G76464
TU103035 other upstream 1707144 25184085 ~ 25184732 (+) True G76423
TU102930 other upstream 1943727 24946788 ~ 24948149 (+) True G76358
TU102912 other upstream 2010935 24873400 ~ 24880941 (+) True LOC111193110

Expression Profile


XM_007231189.3 Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 10.
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XM_007231189.3 Expression in each Bioproject

Bar chart with 7 bars.
XM_007231189.3 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 20.
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