RNA id: XM_007231192.3


Basic Information

Item Value
RNA id XM_007231192.3
length 1375
RNA type mRNA
GC content 0.39
exon number 5
gene id LOC103032770
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 26986544 ~ 26999262 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGCACGTGTGTGAGTGAGCGGGCGAGTGCGCGCGCTGACAGGATAACAGAAGCGGTCACTGTAGCTGTAAAATGGCAAAGTTTCTGTCGCACGATCAGATCACTGAATTTAAAGAGTGCTTTTCACTCTATGACAAAAAGCACAAGGGTAAAATCAAAGCCCAGGACCTGATCACAGTGATGAGATGCCTTGGCTGCAGTCCAACCCTGATGGAAGTGGATAGACATCTGAAGAGACATAATATAGATAAGTGTGAGGAGCTGGACTTCTCCACTTTTCTCACCATAATGTATGAACAGCTTCAGCAGGAGAACCCTGAAGCTGAGATTCTGCAGGCCCTGAGCAGAATGGACAAGCAGAAGAACGGTTATGTTCTGGCCTCTGAGCTCAGAGCAACACTGAGAGTAATGGGAGAGAAGCTCACAGATCAAGAAGTGGATGAGCTCTTCAGAGAGGCTGGCGTGGGCGATGACGAAAACATTCACTATGAAGAGTTTGCGAAGATGGTGACACTGCAATCAACACGATGCTGAAGAGCCTTTacaaagagacagacaatgTGTTAATAGTTTAACAACACACTGGAGGGGAAATTTATTACTGTTTACACTGAGCAATCCTGAGCAGAGGAACCATCACATAATAGTGTTGGTTTAGTAGAGTTCAGATTACTAATAAAGCACTAAATCTTTTTAAGAGGCTTCATTAGACTGATTTACATGCTTAGAGTAGAATTGTATAGAAGATTTATAGcctcatacacactctcactaACATTATTATCAAAGATAAGTACTTGACTGGGTGCCAGTTGGTCAAATCATTTACTAAGCGTGGGACGTTTTGAGAAATGACCACTTGttgatgctgtgtgtgtgtgttttgaacaGTACTATGAAAGAAGGGTGTGTGAGGAATTGTGAGCTTTGTGTTTTCTTAAACTGGAGACTTTTagatttaaccttttttattttttcataaatgtttttttttttaactacagtAGATTTGCACAGATCTGTATTTCACAGATACATTCACATTGATCTGAAGCAGCAGATCAATGTCTCATCTTAAAGTAATATGGGAGATTCTGTTGTAAGAACtattataaataaagttaagGTTTGTTCTTTTCTATAGCAATAATACCCAGTCCGCTCAATTCTGTAGAGGATATTGCTACACGTTTTAAGTATCATTGACTGCACTCCTATATCTTCAATCTAACAATCTTCTTGAATTTGTTTTTATGAAACATCCTGACAAAAGTTTACATCAGCTtcatgaaaaatgtttttaactcACAGCTCGGCTCTTATAACGATGAATCCTATTGtaaaatcccaaataaaaagaCATTCATGAATAAATA

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650279.1 lncRNA upstream 300866 26683888 ~ 26685678 (+) True LOC111193118
TU103618 lncRNA upstream 300916 26684068 ~ 26685628 (+) False LOC111193118
TU103615 lncRNA upstream 306654 26679640 ~ 26679890 (+) True G76838
TU103610 lncRNA upstream 415145 26571180 ~ 26571399 (+) True G76833
TU103397 lncRNA upstream 839792 26145625 ~ 26146752 (+) True G76655
TU103729 lncRNA downstream 932 27000194 ~ 27000955 (+) True G76931
TU103740 lncRNA downstream 48323 27047585 ~ 27047821 (+) True G76939
XM_007231191.3 mRNA upstream 4141 26968636 ~ 26982403 (+) True LOC103032468
XM_007231189.3 mRNA upstream 28150 26891876 ~ 26958394 (+) True LOC103031630
XM_022672443.1 mRNA upstream 415829 26515189 ~ 26570715 (+) True mon2
XM_022672444.1 mRNA upstream 415829 26515189 ~ 26570715 (+) False mon2
XM_022672441.1 mRNA upstream 472523 26490616 ~ 26514021 (+) True LOC103027405
TU103131 other upstream 1690076 25294501 ~ 25296468 (+) True G76464
TU103035 other upstream 1801812 25184085 ~ 25184732 (+) True G76423
TU102930 other upstream 2038395 24946788 ~ 24948149 (+) True G76358
TU102912 other upstream 2105603 24873400 ~ 24880941 (+) True LOC111193110

Expression Profile