RNA id: XM_015600836.2


Basic Information

Item Value
RNA id XM_015600836.2
length 1467
RNA type mRNA
GC content 0.45
exon number 8
gene id mrps35
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 25844617 ~ 25857522 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGTTGTAGTGCTCGCATGATTTGGAGATCGGTAGACCTGCGCAGGACTGCGCTGCGCACGCTactgcagctccagctcaaCATGGCGGCCTCCACATTTTGCCCTGTGCTTTTGCCCTTAAGTAGAATAAACTGCAAACTTAACGGAATTTACACacttattttacttaataaaacaGCCGCGTACTCCACAGGACTGTCAGTAAAAAAGACCGGCGCTAAAACAGgtttgccacagAGAGGTGGTAAGGAACTAAGGAGGCAGATAAagCAGGTCTTACAACCAAGGACTGAGAGAATGGCCGTGGACCAGGACTGGACTGCAGTGTACCCCACTGCGGCCTCCTTCAAGGCAGATGCTGTTCCACTGCCTGTGCGGATGGGGTACCCTGTTAAAAAAGGGGTGCCTCCTTCAAAGAAGGGCAATCTGGAACTTTTAAAGATTCCAAACTTCCTGCATTTGACTCCAAATGCTATCAAGAAACAATGTGAAGCCCTTAAGCCATTTTGCACAGAATGGCCTGCTGCTCTGGATTCTGATGAAAAATGTGAGAAGCATTTTCCCATCCAGGTGCAAAAGAAGGACTATGTATTTGCTGGACCATCACTGAGGCATCCAGATGCTAGAATTGTCACACTCACTGTCAAGCTCTCCAGTTTGAATCTAGATGATCATGCAAGGAAGAAGATGATCAAACTAAGTGGAGAGCGTTACAACAAAGACACGGACACACTCACCATCACCGCTGACAGTTGTCCACTGAAACAGCAGAACCATGACTACGCAATGTACATGCTCACTGTTCTATACCATGAATCCTGGAAAATTGAGGCATGGGAGAAAGAAAAGACGCGTGCGGATATGGAGGAGTATGTTTGGGAGGATAGCCCATCCCAGAAGAACATTCTGGAAACCTTGTTGCGCATTCGTCCACTCAGTGAGCAGCAGGAGGAAGGAGAAGTGCGGGAGGAGTTGCTGGGTCGAGAGGAGGTGCAAGAATACAAAGACTCTGTAACCAAACTGAAAAACGAGGGTGAGACTGAGGGCAACATGCAGCAGTACAAAGAGGCGGTGAAGAAACTTCTCAGTATCTGAAGAACTTTGTGAcctgtctgagagagagagacagggtgaAAATGAGCTGCACTGAATATAGAGTGCAGATCTAAGCTCAGACTTCTTAATTCAACAGATATGGAGAAGCTGATCTGAAACATAACTCAGTCTCATTTCAACCAGTTAAGAACACCCACCTTTCCCCCTTCCCCCATATTTTCAATGAGTTCACTCTCCTATGCACTTGCACAGGGTTTCAACATTGACTAACCATTAATACAGATgtcctgtctttttttctgaacagtgaatatactttttaaagtaaagttgtTGTCTGGAAAATACATGGTGGTcttgtttatgtatttacaataaatataataaaatgttcgGTGCTCATAAACCACA

Function

GO:

id name namespace
GO:0005840 ribosome cellular_component

KEGG:

id description
K17413 MRPS35; small subunit ribosomal protein S35

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103428 lncRNA downstream 13920 25762522 ~ 25830697 (-) True G76676
TU103322 lncRNA downstream 130697 25713483 ~ 25713920 (-) True G76595
TU103308 lncRNA downstream 199460 25644568 ~ 25645157 (-) False G76590
XR_002650276.1 lncRNA downstream 203484 25639947 ~ 25641133 (-) True LOC111193116
TU103310 lncRNA downstream 203891 25639302 ~ 25640726 (-) True G76590
TU103455 lncRNA upstream 220916 26078438 ~ 26079115 (-) True G76701
TU103461 lncRNA upstream 229830 26087352 ~ 26102108 (-) True G76706
TU103462 lncRNA upstream 288107 26145629 ~ 26146804 (-) True G76707
XR_002650278.1 lncRNA upstream 289626 26147148 ~ 26171101 (-) False LOC111193117
XR_002650277.1 lncRNA upstream 289626 26147148 ~ 26166516 (-) True LOC111193117
XM_007235191.2 mRNA downstream 182992 25655765 ~ 25661625 (-) True adck2
XM_022672425.1 mRNA downstream 212846 25615420 ~ 25631771 (-) True bbs4
XM_022671929.1 mRNA downstream 282670 25351525 ~ 25561947 (-) True LOC103047119
XM_007235184.3 mRNA downstream 517064 25317126 ~ 25327553 (-) True mpi
XM_022672423.1 mRNA downstream 548240 25282789 ~ 25296377 (-) False rab3il1
XM_007231581.3 mRNA upstream 215575 26073097 ~ 26077993 (-) True cdkn1b
XM_007231580.3 mRNA upstream 221854 26079376 ~ 26085001 (-) True yars2
XM_007231582.3 mRNA upstream 233740 26091262 ~ 26134844 (-) True LOC103026228
XM_022672438.1 mRNA upstream 533493 26391015 ~ 26438288 (-) False LOC103029104
XM_022672437.1 mRNA upstream 533493 26391015 ~ 26438288 (-) False LOC103029104
XR_002650273.1 other downstream 542849 25288850 ~ 25301768 (-) False rab3il1
XR_002650274.1 other downstream 542849 25289882 ~ 25301768 (-) False rab3il1
TU103036 other downstream 660148 25184209 ~ 25184469 (-) True G76424
XR_002650272.1 other downstream 894595 24949044 ~ 24950022 (-) True LOC107197705
TU102973 other downstream 924252 24914298 ~ 24920365 (-) True G76377
TU103672 other upstream 1005892 26863414 ~ 26868817 (-) False LOC103031319

Expression Profile