RNA id: XM_007231581.3


Basic Information

Item Value
RNA id XM_007231581.3
length 2346
RNA type mRNA
GC content 0.42
exon number 3
gene id cdkn1b
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 26073097 ~ 26077993 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATCATTTTTCTCTCCACTCAGCCTCCCCTCTATCGCCATATTGGGCACCGAAAAGCCTGCTGTTATTTTCTTCCCTTTTACTACGAGGCGAGGCTGACAGGAGTGCGCACTTCGTCTCGCTTTGACTGCGCTTTGTTTTGATGGTCTGTGGAGGGGAATTTCTCTCGGCGTGTGTTTTTTCCTCGCGCTCTCACTCTTGCAGAGCATGCACGCGCTTGTGGCGAGTACAGCGTGTGTGAGCGTGAGCGTGCGTGTTTTTCTGGATgcctgctgctgttgttgtgcAGCGCGTTGAGCCTGGAGGAAAGCGCCTGTTTTGAGTCGCTGTTTGTATCGGTtattttgtggggttttttttttttttttttcacacgccaaaaaataaataaaaataaaagaacgaTGTCTAATGTGCGTCTCTCGAACGGAAGCCCGACCCTGGAGAGGATGGACAACCGGCCGCCCGACCAGCCGAAGCCGAGCGCCTGCAGGAGCCTGTTCGGGCCGGTGGATCACGAAGAGTTAAAGAGGGAGTTAAAGGGACACTTGATGGCGATGGAGAAGGCGTCGACCGAGTCGTGGAACTTCGACTTCTCCAACTTCACGCCTCGGCGCGGCCGCTACCTGTGGTCCCCCGTGGACAGCACGGACTTACCGGGCTTCTACAGCTCGACAGGGAATAAGAGCGTGGATGTAAACGGGAATCACGAGCGGCTCGCGGAGCGGAGCGAGACCCAGACCGAAAGGAGAGACCCGCAACAGAACGTCAAGAACAAGAGAAAAAGACGGTCGTCCCTCGATTCCTCGTGTCAGACTAAACGCTCGCGCACCTGTGTGGATGAAGTCTCGTGCCGGCCGGGTTTGACCCAGGCGCTCGATCACACACCCGTGAAGTCGAGCCCCCAGCGGCAGACGTGAGCGAGCCGTGTTGAGAGCTGAAGACTTTCTCTCCCTTCTGACGGCTTCAGTGCTTGGCGAATTAAGAATTCGAGGAGAGAGGAACGATAGGAAAGCAAAAGCATATCGGCTGTAAGAGTggagagactgcacaagcactgaaacaaaaacacaaaagttcTGGCACTAAAAAAAGCAACTGCCTCAAAAGCAGTGTATGTAGCAGTGTGCAATTAGGTTTAATCTccttttttgctcatttttcttttcttactaCCTGTGTATATACTTTTTCATATGTAGcacataatacattttttgtttgattttttttttgacgagTAGGTGTGGATTTGATTTGACTTGAAGAGTTGCAATGTATAGGATTCAAAATCTTTCCAAAATGCTGTTTGTTACTTCTCTCTATTTTTGAAGGCCATGTGTCCCATCTTACTTGTGTTCTCCTGTCACTGAACTCCATCATAATGTACATGCATGCTTTAACAGCTGTGTGTACCTAATATTATTCAGGTGAGACATGGTACAGAAGTTGCCTTGCCTCCCAAAGATCAGTTTTGATCCTTGCCTCTCAGTTTGCTCTCTCAAAACGGCACCACAGAAAAAGGTCACAATGCATTATTCTCTGTAAAAAAGTGCAGAGGTTATCTAAAGTCTGTTAACGAGTATACGTAATTTATCTGTCAGATTTTGACTTGGACGGCTGACTAATATTATTCAGTTCAGTACACAAGTTCAAAACAAGTAGCATGAACCAGTATTAACACCAGGCTAGGCACTTGCTGAGAGACATATGCGTCCCTcatatattgttaaattatttttctttaatatgtATCAGGATTACTTGTATTTTGAGTGAAAATTtctactgatttgtttattttatattttctcattCCTTACGTTTCCTTCAGTTCAACACCACCGTTTGTTTTTTCCTCCATTTGGTGTAATATCAGGAAAATAGCCTCTCTCAGCTATATGCACCTACACTCCCATTTGATTCTGTGGTTAACTGATGCATGAGTATATTTATAGAAAAACAAATTCATGTTAATATTTCAGCAGTCCACACAGcctgtgtatttgtttaaacttTGAAGTGTACCTCTGTACATAACtgtaaaaacactgagaaaattaaaactaacttatttatgtcaattttattttattttattttttttttaatctaaaaaatggGTTTTGTCATGGTTATCCAAAGTGGCAtttgagttatttttttaaatgcttcctTTTCTTggtagggattttttttttctccagaaaaTAATGTTAACAAATTGTGTAAGGTTGCAAACTGAGcctgatggaaaaaaaataaagacaaaatgcagtatgtgcattttttgtactttgttGGATAAAAGATGTACTgcaatcaattaaaataatttaattattata

Function

GO:

id name namespace
GO:0043086 negative regulation of catalytic activity biological_process
GO:0045859 regulation of protein kinase activity biological_process
GO:0042326 negative regulation of phosphorylation biological_process

KEGG:

id description
K06624 CDKN1B, P27, KIP1; cyclin-dependent kinase inhibitor 1B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103428 lncRNA downstream 242400 25762522 ~ 25830697 (-) True G76676
TU103322 lncRNA downstream 359177 25713483 ~ 25713920 (-) True G76595
TU103308 lncRNA downstream 427940 25644568 ~ 25645157 (-) False G76590
XR_002650276.1 lncRNA downstream 431964 25639947 ~ 25641133 (-) True LOC111193116
TU103310 lncRNA downstream 432371 25639302 ~ 25640726 (-) True G76590
TU103455 lncRNA upstream 445 26078438 ~ 26079115 (-) True G76701
TU103461 lncRNA upstream 9359 26087352 ~ 26102108 (-) True G76706
TU103462 lncRNA upstream 67636 26145629 ~ 26146804 (-) True G76707
XR_002650278.1 lncRNA upstream 69155 26147148 ~ 26171101 (-) False LOC111193117
XR_002650277.1 lncRNA upstream 69155 26147148 ~ 26166516 (-) True LOC111193117
XM_007231579.3 mRNA downstream 215575 25844617 ~ 25857522 (-) False mrps35
XM_015600836.2 mRNA downstream 215575 25844617 ~ 25857522 (-) True mrps35
XM_007235191.2 mRNA downstream 411472 25655765 ~ 25661625 (-) True adck2
XM_022672425.1 mRNA downstream 441326 25615420 ~ 25631771 (-) True bbs4
XM_022671929.1 mRNA downstream 511150 25351525 ~ 25561947 (-) True LOC103047119
XM_007231580.3 mRNA upstream 1383 26079376 ~ 26085001 (-) True yars2
XM_007231582.3 mRNA upstream 13269 26091262 ~ 26134844 (-) True LOC103026228
XM_022672438.1 mRNA upstream 313022 26391015 ~ 26438288 (-) False LOC103029104
XM_022672437.1 mRNA upstream 313022 26391015 ~ 26438288 (-) False LOC103029104
XM_022672436.1 mRNA upstream 313022 26391015 ~ 26438288 (-) True LOC103029104
XR_002650273.1 other downstream 771329 25288850 ~ 25301768 (-) False rab3il1
XR_002650274.1 other downstream 771329 25289882 ~ 25301768 (-) False rab3il1
TU103036 other downstream 888628 25184209 ~ 25184469 (-) True G76424
XR_002650272.1 other downstream 1123075 24949044 ~ 24950022 (-) True LOC107197705
TU102973 other downstream 1152732 24914298 ~ 24920365 (-) True G76377
TU103672 other upstream 785421 26863414 ~ 26868817 (-) False LOC103031319

Expression Profile