RNA id: XM_022672440.1


Basic Information

Item Value
RNA id XM_022672440.1
length 1162
RNA type mRNA
GC content 0.43
exon number 8
gene id LOC103027718
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 26475507 ~ 26484181 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAAAGATCTCAGAGAGTTTCTGTAGAGTTTTCTGTCAGAATGTGTGAGTCAAAATTGACAGAGCCTGAGATCAAAGGTATTTAATAGCTCACACATAAGTATGATAACGGGCAAAAAAAGCCTTGAACCTTGTGCACACTTTCACACTTGTATCAAAAGATGAGCTTCACAACACTGACAGCTGAGAACCACTCCATCCCATTAAGTGATGGTAACAGGATACCCATCATCGGACTCGGGACCTATGGGGATCCACGCACACTTTGGAACACCTTCCACCCACCTGAGCTGGTTAGACCTGCATTAGAGAGAACTCTGAAGACTCTACAGCTGGATTATGTTGATCTGTACATTATTGAGTTTCCTGCTGCGTTTAAGccAGGTGATGAATTCTACCCTAAAGATAAACATGGGAAATACATCTATCATGAGACAGATCTGTGTGCTACATGGGAGGCACTGGAGGCTTGCAAAGATGCAGGATTGACCAAATCACTTGGAGTTTCAAACTTCAATCGAAGACAGCTGGAgctgattttaaacaaaactggACTAAAACATCGACCAGTTTCCAACCAGGTTGAGTGCCATCCCTACTTCACTCAGCCCAGGCTGCTGGAGTTCTGTCGGCAGAATGATATTGTGATTGTGGGCTACAGTCCTCTCGGAACCTCTCGAGATGCTTCCTGGGTGAACCTCAAATGTCCTCCGATGTTGGAAGATGAGGTTCTGATCTCCATTGGGAGAAAATACAATAAGAACACAGCTCAGGTTGCTCTGAGGTTTAACGCTCAGAGAGGCGTGGTCGTCATCCCCAAGAGCTTCAGTCCTCAACGCATCCGAGACAATTTTCAGATTTTTGATTTTTCTCTCACTGATGAAGAAATGAAGGCCATCGAGGgactaaacaaaaatattcgTTTTGTGGAGCTCCTCATGTGGAGTGACCATCCTGAGTATCCATTTCACGATGAGTACTAAACCCTTTTACTACCAGCAGACATTaactatacattaaatatactgtatattagtttCATTTAAACTGAGTTAGACACTAGGGGGAGTTGTTCTAACATTCATTACATTTTGTACAGCAGCTGCTATGAGTTGTGTTGTTATACTTGTGTAAAGTCAGTACAATAAAAaggattgagaaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103397 lncRNA upstream 328755 26145625 ~ 26146752 (+) True G76655
TU103387 lncRNA upstream 382314 26087189 ~ 26093193 (+) True G76646
TU103228 lncRNA upstream 761657 25713432 ~ 25713850 (+) True G76536
TU103252 lncRNA upstream 820510 25652587 ~ 25654997 (+) True G76552
TU103242 lncRNA upstream 829029 25640587 ~ 25646478 (+) True G76543
TU103610 lncRNA downstream 86999 26571180 ~ 26571399 (+) True G76833
TU103615 lncRNA downstream 195459 26679640 ~ 26679890 (+) True G76838
XR_002650279.1 lncRNA downstream 199707 26683888 ~ 26685678 (+) True LOC111193118
TU103618 lncRNA downstream 199887 26684068 ~ 26685628 (+) False LOC111193118
TU103729 lncRNA downstream 516013 27000194 ~ 27000955 (+) True G76931
XM_007231584.3 mRNA upstream 189065 26236780 ~ 26286442 (+) True LOC103026929
XM_007231585.3 mRNA upstream 189065 26247566 ~ 26286442 (+) False LOC103026929
XM_022672433.1 mRNA upstream 422393 25860529 ~ 26053114 (+) True LOC103028784
XM_022672432.1 mRNA upstream 422393 25860529 ~ 26053114 (+) False LOC103028784
XM_022672434.1 mRNA upstream 422393 25860529 ~ 26053114 (+) False LOC103028784
XM_022672442.1 mRNA downstream 6434 26490615 ~ 26511281 (+) False LOC103027405
XM_022672441.1 mRNA downstream 6435 26490616 ~ 26514021 (+) True LOC103027405
XM_022672443.1 mRNA downstream 31008 26515189 ~ 26570715 (+) True mon2
XM_022672444.1 mRNA downstream 31008 26515189 ~ 26570715 (+) False mon2
XM_007231189.3 mRNA downstream 407695 26891876 ~ 26958394 (+) True LOC103031630
TU103131 other upstream 1179039 25294501 ~ 25296468 (+) True G76464
TU103035 other upstream 1290775 25184085 ~ 25184732 (+) True G76423
TU102930 other upstream 1527358 24946788 ~ 24948149 (+) True G76358
TU102912 other upstream 1594566 24873400 ~ 24880941 (+) True LOC111193110

Expression Profile