RNA id: XM_022672411.1


Basic Information

Item Value
RNA id XM_022672411.1
length 3032
RNA type mRNA
GC content 0.49
exon number 23
gene id LOC103025216
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 24927013 ~ 24946686 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTATAAGAAGAGCTGCTGAATCACGGTGCAGTGAATCGCCCGGACTGCGGAGCTGAAAACGACTTCACACAGCTTTAACTAAGCTCTTCTGCAGCTGTAAGAGGTACATTTAGAGCTATagtttctctttcatcttcaCTCAGAGCGGACAAACACCCCACAACCCCCCGTCCTCTCCTTTGCTTGGGCTGCGCTCCGTTTAATTTGATCGCTGAACCGACTCTCGATTCGATTCACTTCACTGTTCCGAacagtgtttgtgtttcaggGATTCAGATCGTGCAGATCACACACCCACCCTGCGCTCCTCCGCCTGTAGAGAGGGAACAAGATGGTGAACTGCGGCTTGTTGACGGTGAAAAATGAACCAGTTCCTCTGAAGAGCATAGAGGTGGAACTGCAGGTTCAGGGCCATGTAGCCACTGTGAGCTCCACCCTGCAGTATACAAATGAAGAACAGAGCCCCCTGGAGGCTCTTTTTGTCTTCCCTTTGCCAGCAGAATCTGCTCTCTGCCACTTCAGTGCCAAAATCGGAGACCAGGAGACAGTGGCAAAGGtgcaggagaaagagaagGCAAAGGACGAGTATGATGATGCGATCGCTTCAGGTCAGCAGGCCTTTCTGCTGGAGGAGAGTGACGAGAGTGAGGATGTGTTTAAGCTGAGTGTGGGCAGTCTGCCTCCAGGCCAGAGTGCTGCTGTGACCTTCATCTACGTTACTGAGCTTTCTGTGCAGGCTGACCACTCCCTGCGCTTCTGCCTGCCTGCAGTACTCAACCCTCGCTACTCACCACCAGGAACACAAGCAGGTGTGGTATCTGAGATAACAACTTCAGCAAGTATCCCctactctctctccttcactgcCACTGTGAGCTCTCCCAATCCCATCGCTAAAGTAGAGTCCAAATGTGCCCTTGAGCCTCTGGTGTTCAACACAGACCGTACAAATGCAAaggtgAGTCTGTCAGCAGGTCATAAATTTGACAGAGATGTGGAGCTGTATCTGTACTATGAGAATGCCCACCAGCCCACTGCTATAGTAGAGGCAGGAGTGCCCACTGCAAAACCAGgAACTCTTATGGGAGACCCTGTAGTCATGCTGAGTTTGTACCCAGAGTTCCCTGAGGCAATAATGTCATCTATGTCAACTTGTGGTGAGTTTGTGTTCGTAATGGACCGATCTGGCAGTATGGGCTGCGCAATGCATAATGGACCTGGTGCGAAGATGCGTATCGAGAGTGCCAGGGATACTCTTGTCCTGCTGCTAAAAAGTCTTCCGATGGGCTGCTACTTCAATATCTACAGTTTTGGATCACattacaaatcattatttccGAAGAGCGTGGAGTACACTGAGGAGACAATGGACCAGGCTGTGAAGAGAGTAAAGGAAATGCAATCAGACATGGGTGGGACAGAGATTTTGGAACCTCTGAGAAACATCTACAGCCAGCAGTGCATCCCTAACCACCCTAGACAGGTCTTCATTTTCACTGATGGTGAGGTGGGGAACACCAAAGATGTTCTTCAGCTTGTGAGAAACAATGCTGATCATCACAGgtgcTTCTCTTTTGGGATTGGTGAAGGTGCAAGCACTGCCCTCATCAAAGGCATGGCTCAGGAGGGACGTGGCCACAACCAGTTTATCACAGGCTCCGACCGCATGCAACCCAAAGTAATGCAGTCTCTCCGCTATGCACTGCAGCCAGCTGTGATCGATATTACTGAAGTGTGGTCAGTTCCAGCAGGCATGTCCACCACCCACCTAAGCCCTCCACTTAATGTACTCTTCCATGGCCAGAGGGCACTGATTTATGCCCAGCTGAAAGGAGAGAATCAGACCCCGGACTCTCAGGGGACAATAACAGTGAAGTACCAACTAGCAGGTCAAGAAGTCACCAACACGCTCAACTACTCTCTCAAGCCGGCTGAAAATAGCGGACTCTCCATTCACAGACTGGCTGCCCGGTCTCTGATCCGCTCTCTGGAACGGCAGGAGCAGACTGAGGGAGCAGAGAAAGAGGCCTTGAAGGCCAGAGTGGTGGAGCTCAGTGTGGAGGCTGGAGTGAgctgctcacacactgctttcatCGCTGTTCATAAGGGCAGTGGAGAGGCGGTGGAAGGACCAATGTTGAAGAGGAGAGTGCCCACAGCAAtgAGGTTTAGAAGTATGCCTATGGCAATGGCCTGTGCTGCTCCTCCAATGGCAAGGGTTTTGCgtTCTGCACCAAGGAAGGCTTTACgTGGTGTAACACAGATGTATTTTGATGTTCCACCACAGAGGAGTTTTGGAGGGCATATGAGTCTTGTATCCTCCTGTAACGATTGTGAAGACATCTCAGATATGCTTCCGCCTGATGTTGTTGAGGACCACTTGCTGGAGCTCATTTCCCTTCAGAAGGCCTCAGGCTGCTGGGAAATGGGCAACGCTCTGGTGAAAGTGTTTGGGAAGCCAGAAGATGAGGTAGTCAAGCAGACCCCCGCACAGGTGGATAAGGGGGTCTGGGCTACAATTCTGGCTCTTATCTGGTTACATGGCtttaagatggatgatcaggtTGAATGGCAGTTTGTGGCCATGAAAGCAGTGACGTGGATCCAAAACCAGAAAGTGGCCAACCTTTCTGAGTGTGTTCAGGCAGGTAATTCTCTGCTGGGCTGCCAGGTCAAAGAAGAAGCACTTGGACTCTAAAGTCTTCACttctctgaactctgaattCTCCTCTTGTGTCATGCTGCCAAATAAAACCAGCCTCAAAATGTTAACAGCTATTTTTTGCTAGTAAATTCTGACTGGCACTAAACTATTCTAATACTCCGCTTCTAAAGGTTATTTTATCTTCTGAATATGTTTTGATAATCTTGTAAAAGTAAAGggcctgtttttatttttcatgccTTGTCTGTAACATTTAGAGCTGTTATCTAAACCACTGCAGCTATCTATAGTCATATTTCTAAAGTGATGTTATTAACCACATAAATCAtacttaaacaaataaacttaaataaaaatctatacCATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102914 lncRNA upstream 4574 24921135 ~ 24922440 (+) True G76349
TU102705 lncRNA upstream 228277 24632047 ~ 24698737 (+) False LOC111193114
TU102942 lncRNA downstream 35279 24981965 ~ 24983407 (+) False LOC103022391
TU102943 lncRNA downstream 37466 24984152 ~ 24984391 (+) True G76367
TU102947 lncRNA downstream 41768 24988454 ~ 24991599 (+) False LOC103022708
TU103124 lncRNA downstream 332329 25279015 ~ 25279623 (+) False LOC103026466
TU103128 lncRNA downstream 346719 25293405 ~ 25293928 (+) True G76463
XM_022672384.1 mRNA upstream 7564 24899036 ~ 24919450 (+) True LOC103024697
XM_022672403.1 mRNA upstream 28477 24873479 ~ 24898537 (+) False LOC111193110
XM_022672402.1 mRNA upstream 28477 24894074 ~ 24898537 (+) False LOC111193110
XM_022672401.1 mRNA upstream 28477 24894449 ~ 24898537 (+) False LOC111193110
XM_022671925.1 mRNA upstream 55648 24865790 ~ 24871366 (+) True LOC111193061
XM_007235102.3 mRNA downstream 6139 24952825 ~ 24966947 (+) True hdac10
XM_007235100.3 mRNA downstream 28255 24974941 ~ 24983714 (+) True LOC103022391
XM_007235101.3 mRNA downstream 41710 24988396 ~ 25004515 (+) True LOC103022708
XM_022671927.1 mRNA downstream 239939 25186625 ~ 25230901 (+) True LOC103044987
XM_007235181.3 mRNA downstream 289733 25236419 ~ 25246778 (+) False gtf2h1
TU102912 other upstream 46073 24873400 ~ 24880941 (+) True LOC111193110
TU102913 other upstream 47122 24873400 ~ 24879892 (+) False LOC111193110
TU102670 other upstream 666508 24258509 ~ 24260506 (+) True G76192
TU102479 other upstream 889153 24032100 ~ 24037861 (+) True LOC103038709
TU102363 other upstream 1009411 23915791 ~ 23917603 (+) True G75974
TU102930 other downstream 102 24946788 ~ 24948149 (+) True G76358
TU103035 other downstream 237399 25184085 ~ 25184732 (+) True G76423
TU103131 other downstream 347815 25294501 ~ 25296468 (+) True G76464

Expression Profile