RNA id: XM_007235121.3


Basic Information

Item Value
RNA id XM_007235121.3
length 2144
RNA type mRNA
GC content 0.45
exon number 13
gene id fads2
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 24725144 ~ 24740083 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGCGGAGGCAACGGGGGCAACACACAGAGGGAGCACGGAGGACACactcactatcacacacacacacacactcactgtcacacacacacaccctcatatacacacacccacactcatTAGAGCTCAGGAGGAggacacactcactcactcagcgatcagagaggtagagagagagcaggTGAATCAGAACTGCTGCAGAGAACCATCACTCTACTGGACAGAGCCCATTGAGTGTTGGAGGACTAATGGGTGGGGGCAGTCATCAGAACGAGGATGTCTCGACAGAAGGCAGAGGGGCGAATGCCGTATACACCTGGGATGAGGTGCAGAAACACAGTCATCGGGGAGACCAGTGGGTGGTGATCGAGCGGAAGGTGTACAATGTCAGCAACTGGGTTAACAGACATCCTGGAGGCCGCAGGGTTATCGGTCATTACGCTGGAGAGGATGCAACGGAAGCGTTTACAGCATTCCATCCTGATCAGAAGTTCGTACGGAAGTTTATGAAACCACTGCTGGTTGGAGAGCTAGCACCCTCTGAGCCCAGCCAGGACAACAAGAAAAATGCTGCCCTGGTTGCAGATTTCCAGGCATTGCGGGAGAAGTTTAATGCAGAGGGTTTGTTCCGCACTAGTCCTCTGTTCTTCATGATGCACCTCGGCCATATTCTAGTCCTGGAAGCCATATCTCTGGCGCTGCTTTGGCATTTTGGCAACGGCTGGATTACCACAATtctatgtattttattactggCTACTGCACAGTCTCAGGCTGGCTGGCTGCAACATGACTTCGGCCATCTGTCCGTCTTCAAGAGGTCCGGCTGGGATCATGTAGCGCACAAATTCGTCATTGGACATCTAAAGGGAGCCTCAGCAAACTGGTGGAACCATCGTCACTTTCAACACCATGCTAAGCCCAATGTGGTCCTTAAGGACCCTGACATCAACATGCTGAAGATCCTGGTACTGGGAAACGTGCTGCCTGTAGAGtaTGGAATTAAAAAGTTGAAGAACTTGCCCTACAACCATCAGCACAAGTACTTCTTTTTCATTGGTCCTCCTCTGCTCATCCCAGTGTACTTCAACATGCACATTTTGCAGACGATGATCATGCAGCGGGACTGGGTGGACTTTGCATGGTATCTGTCCTACTACGCACGCTACTTCTCTTGTTATGTTCCCTTTTTTGGATTCTTCGGATCAATTGCGATTCTGACCTGTGTGAGGTTTTTGGAGAGTCACTGGTTTGTGTGGGTGACCCAGATGAACCATATCCCTATGGATATAGACTACGACATACATGAGGACTGGCTAAGCATGCAGttgagaGCCACCTGCAACGTTGAGCAGTCATTCTTCAATGACTGGTTTAGTGGTCACCTGAACTTCCAGATCGAGCACCATCTGTTTCCCACAATGCCTCGTCATAACTACATCCGTGCTGCTCCTCGGGTGCAGGAGCTTTGCAAGAAGTATGGAGTTCAGTACCAAGTCAAGGGCTTATGGGAGGCCTGGTCTGACATCGTCAGGTCTCTGAAGAAGTCAGGAGAGCTGTGGCTGGACGCTTACCTTCACAAATAATCCCAATAATTCCAATCCCCAACTCGCCCCTCCTTCATTCAATGACTtcaatttttaaacaatatacaaCAATCAAAATCCAAAAACGTAAACGTTTAAGAATATCCGTAACAAATAAGTCTTAATTCACAAATACTGTTGCTGTTTATCTCTCCCTTTTCCATGTATGCTGGAACTCAACTGTAATTAAAGTGCTCTAGCTGTAACTGAATTGCACAGTAAACCTGCAGACAAATGCTGTTTAAATGCTGGACTTTACAACTGTAAGAACTGTACCTGATATTTCGTAGGGTTTTTTTAGTTCTGACTTCTACCTGTACCTGTTTAAATCAGAGAAAAGTTAGATAGTATTTTGAATTTATTAGGAGTTTTAGCAGAATCTGGATTACATAACTTTTGCAGTTTTGTACTTAATTTTTCCTGTATTGTTTATATGAAAATAcctgtgttttttgctttttttcctaATCAGCTATTACATATGATGTAATTTgtggaaaaaatgaagcagaaagcacacattaaacacatatgttgtgaaataaaattttaaaaagaggG

Function

GO:

id name namespace
GO:0006636 unsaturated fatty acid biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0001889 liver development biological_process
GO:0006810 transport biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K10226 FADS2; acyl-CoA 6-desaturase (Delta-6 desaturase)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102713 lncRNA upstream 14193 24582347 ~ 24710951 (+) False LOC111193114
TU102705 lncRNA upstream 26407 24632047 ~ 24698737 (+) False LOC111193114
XR_002650269.1 lncRNA upstream 26422 24696319 ~ 24698722 (+) False LOC111193114
XR_002650271.1 lncRNA upstream 26422 24696319 ~ 24698722 (+) False LOC111193114
XR_002650270.1 lncRNA upstream 26422 24696319 ~ 24698722 (+) False LOC111193114
TU102914 lncRNA downstream 181052 24921135 ~ 24922440 (+) True G76349
TU102942 lncRNA downstream 241882 24981965 ~ 24983407 (+) False LOC103022391
TU102943 lncRNA downstream 244069 24984152 ~ 24984391 (+) True G76367
TU102947 lncRNA downstream 248371 24988454 ~ 24991599 (+) False LOC103022708
TU103124 lncRNA downstream 538932 25279015 ~ 25279623 (+) False LOC103026466
XM_007235122.3 mRNA upstream 77595 24426129 ~ 24647549 (+) True LOC103028282
XM_007235123.3 mRNA upstream 323419 24361414 ~ 24401725 (+) False LOC103029007
XM_022672399.1 mRNA upstream 323419 24381932 ~ 24401725 (+) True LOC103029007
XM_015601840.2 mRNA upstream 323419 24384516 ~ 24401725 (+) False LOC103029007
XM_007235125.3 mRNA upstream 365969 24342743 ~ 24359175 (+) True LOC103029535
XM_022672386.1 mRNA downstream 61919 24802002 ~ 24860926 (+) True myrf
XM_022672387.1 mRNA downstream 64350 24804433 ~ 24860926 (+) False myrf
XM_022672385.1 mRNA downstream 64352 24804435 ~ 24860926 (+) False myrf
XM_022672388.1 mRNA downstream 64353 24804436 ~ 24860926 (+) False myrf
XM_022672392.1 mRNA downstream 64353 24804436 ~ 24860926 (+) False myrf
TU102670 other upstream 464638 24258509 ~ 24260506 (+) True G76192
TU102479 other upstream 687283 24032100 ~ 24037861 (+) True LOC103038709
TU102363 other upstream 807541 23915791 ~ 23917603 (+) True G75974
TU102309 other upstream 1237274 23487530 ~ 23487870 (+) True G75938
TU102047 other upstream 1952583 22755152 ~ 22772561 (+) False LOC103028957
TU102912 other downstream 133317 24873400 ~ 24880941 (+) True LOC111193110
TU102913 other downstream 133317 24873400 ~ 24879892 (+) False LOC111193110
TU102930 other downstream 206705 24946788 ~ 24948149 (+) True G76358
TU103035 other downstream 444002 25184085 ~ 25184732 (+) True G76423
TU103131 other downstream 554418 25294501 ~ 25296468 (+) True G76464

Expression Profile