RNA id: XM_007235123.3


Basic Information

Item Value
RNA id XM_007235123.3
length 7557
RNA type mRNA
GC content 0.42
exon number 11
gene id LOC103029007
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 24361414 ~ 24401725 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCTCCTCCTGATTCCGGCTGAGGCTGCGGTGGACGAGCCGAGGTGTGTGAGAGTCACAGCGGGGAGATAACGGCGCTCAGCACGatACCCTCAGCTTAACCTGGACCAGCGGCTGgactcacacactcaccccaAATCCCTGCAGGATTAAACAGACTAACTGACCAACAGACGGACAGTCAAACTGATACCCTAAAAAACTCACACAGACAGAGGAGTTGTGGGCCACATAAATGGCTAATAAACAGATCAGTCTGCCTGCCAAGTTAATAAACGGGGGAGTCGCTGGGCTGATTGGTGTCACCTGTGTGTTTCCCATTGACCTGGCCAAGACCCGCTTACAGAACCAGCAGAATGGATCTCGGCTCTATACCAGCATgtCTGACTGCCTTATCAAAACCATTCGGTCGGAAGGGTATTTCGGGATGTATAGAGGGGCTGCGGTGAACTTAACTCTCGTTACTCCTGAGAAAGCCATAAAGCTGGCTGCCAATGATTTCTTCAGATTCCACCTCTCTAAGGATggGCAGAAGCTCACGTTGCTCAAAGAAATGCTGGCAGGCTGTGGTGCAGGTACATGTCAGGTCATTGTTACAACGCCAATGGAGATGCTGAAAATCCAGTTACAGGACGCAGGGAGAATTGCTGCTCAAAGGAAGCTGATGCCGGAGACTGTGGCTCCTGGGGGTCCGGTGGAAGTGAAGAGCCCCACTGCCATGCAGCTCACAAGAGAGCTGCTAAAGGAAAAAGGCATCGCTGGACTCTACAAAGGACTCGGGGCCACACTGCTCAGGGATGTTCCGTTCTCAATCATCTACTTCCCTTTATTTGCTAATCTGAATAACCTGGGGAAGAGGGGAGCAGAAGGTCCTGCTCCGTTTTACGTCTCCTTCGCATCAGGTTGTATCGCTGGCAGCACGGCCGCAGTGGCCGTCAACCCTGTAGATGtgataAAGACCAGGTTACAGTCGTTAACACGCGGCAGTCAGGAGGACACATACAGCGGAGTGACTGACTGCATCAGGAAGATTCTGCGTAACGAGGGTCCTGGTGCTTTCCTGAAGGGGGCGTACTGTCGCGCTCTCGTCATCGCTCCGCTCTTCGGCATCGCCCAGGTGGTCTACTTCCTGGGCGTGGGTGAATACATCCTCAGCTTCTTGCCCAAACGGAACAACTAACCAATCAGCTCCGCTTTCTGCCTTcccatctacacacacacacgctgcacCGGTCAGACCTCGTCCCTCCTCACCTCCACATCTCAGCTGCCCAAGTCACCTGGAGGACCAAGTGATGTGGAGACTACATTAGgtgttttgtttgtatgtgtgagtgtaagtgagtgtgtgtgtacgtgagtGTGTGGGTTTTGTTAAAGTGGGTGTATATTTCTAAATGAATGTTGTAATCATATGGAGTTGGGAGGAGATTCAGGGGGAGCGTTTGCCAAGCTGCCTGAGGTGGCCACTTAGTCCTCAGCTCAGACTTAAGACCACAGGGGAAGATTCtcattcatgaagttttaattGAACACATCAGTGTAGTTTTATTCATTGATTTTGTGGTTTGTGGAGATTTGTATGATTTGAATCTCCTTTTTGACTCTTCTGAGGTATTTATTGTCCATTTGACTGATGATCACAGTGTCAGTTACGACAATCTGAAGAAATGATATCTCTGTTCGCTATGGTTTAAACTGTCAAACGGACttttaatgttgatttaacATTTCTGGAGAGGAGCCAAGCTCACTCGAGAACCTTGACTggattattttgtgtttgtctcCCAATATTATTTATCTGTGATACAGTATGAGTTTTCACGAGCCCAGTCGGAATGTGTTTTTGGCCATGAATGACGTGgaggcaatattttttttgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtttgcgggTTAGTGTGTGATGTGAAAGCTGTTTACAGTCCCGGGCTGACGGCAGCTCTGGGtaaacacactcgcacacagaGCTCAATGTCTGGTCAGATGAGCAGAGCTGGGAGCACTTCGTACAGGAGTGGCACCTGACTGATATCATCTAAGTGATCTGTGCACAGATACTCAATTATACAGAACATATCATGGAGAGGAGTACAGTTTCAGAACCATGAAAGCAGGACATGACTATGTGAATTATTATCAGCTTATAGATCATTAAAGGAGCAATAAGTAAGAGTTTCCAACTGTAAGAGTACATGCTTATTAATAGGTCAAGTTCATTTATTCTGCCATATTCCAGATCCAAATTAAGATCCAGGTGCTTTaactttttatgtattatttgttGAGTAAAATATGACCTGATATgcaaaaggcataaagttaaagATGGCACATTGCTTTATTTACATCAAGCAAAAGTATTAGGCCACCCAGTTCAAGTTTAGAATATGGTAACGCCCCACTGTTGTCAAATATCACAGCTTGCAAACTTTCTAATAAGTTTGAAATAGCTGCTAGTTTCTCAGTTCTTACCAACAATGAAAAGACAGTACCATATATGGGCATAAACCAGAGGGCAAGAGTGAGTGTTTACAGTACCATATATGGGCAAAAGCAAAGAAGAAACCAATGTTTTAAACCAGAACATGCAgtgagagacaaagacagattaaaaaaactgaGATGGCCAAAAGGAAAGTAACAACTTGTATGCAACAGgaaaagttggcaatacttcgcaaagtaaAAGAGTCCAGAACAGAGAACAGTTTCTGATTGGTGGGTTGAGAACTAGGGTTTGTGATATTAGGTTGAGAAGAATTATAGGGTATAGGGTATAGATGGAGTTGAAAGGAAAACCTGGTAGAATGGAAAAATAACTTAGGATGCTTACTATTTTGCATGATGCTTCCTTCCTTTTTGCACTCTATAATAGTCCAAGACAAAAATAACACACTAACTTTACTCAAATTGTTGACAATAATGTGCAACTTTGTTCTCTTTTGCGGATCAGTTCATCTTCTACTCACTTAACTATTCACAGGAACAGAACGTTTAACAAGCGATGCTTATGTTGAGCACATGTGATCAGTTTAATTCTGGGATGTGAGGACAGCATATTTGAGAAGCCATTCTTGCGTGCATTGCCAGCAGACCCGTTCTCATGAGTTGGCAATTCCTCTGAAGCATTGTTATTTTTGGGAAGTCTTATTACAGTAAATCCAGTTGCTGCTAGCAGGCTTTTTGTGAGCACGACACAAAGCCTGTAGAAGGATGCTGCATGCTGAGCCATCGCTATGTGTCACTGTGAAACACACAGTGACAAAAGTATCTATTCCCATCACCATTATGTAACACATTTCTATTCTTTTATTCGTTTATAATTTTAGGCAAAACTGTTACTTATTGCTCCTCTAATCTGACTTGAAAAGCCCACTATACTGCTTCTGCTATACATTACAAGACTTTAGGCTTGTAAgtatgctaacattagctgcgtTTCAAAGGGTCCTTTACTTTATAACAGCAGCCTTTAATGACCGAGGAAACCGCCAGCTCGGCTGCAGCCTAGACTTTGGAACGCAGCTACAATCTTTACTCTGTTAATAATATCAGTGGTGGCTGCTGGCAGTGGTTTAAAGCCGCAGTCAGGAGCCACTTTCAGGCCAACAACAAAGGATTTCAAATAATAGCAGAGCCACCCGGGGGTGGATGTGGCACTGTTTcagctttttctctttttttttaaaagctttttagaAGCTGGTGCTACAGAGCAGGGGGTTTGAATCCAGTCCTGGGGGGATCCCCAGCAGTCCACAGGCCACCCTTTTCTGACATGTTGAATTTCCTAACACACCTTAGCCTAGTAATCAGCATTCAACAGCCTGTGTGGCCTGGCTGAGGTGTGTTTGGAGCTGTCAGAAGCTCCCTGAGGACTGCACTGAAAACCCACTGCTACAGAAAGAGATTGAAATCTGTTCCCCTCTCCAGTCAGTCTCCACACACTGACCTGCAGCTTTGAAGAACTGCCGTTGGGATCTTCAGATCAGTGTCGCTGCTCTACAGCTGACAGATGACGCAAGCAGAGGTCTGTACTTCTCGAAAGCCAAATGAATGCGAAGGATGATTGTCAGGTAGCTCTTCCTAATCAATGAAACGGATCAATGAAGGAATGATCACGCTCATTAATTGCCTTtgcaattgtgttttttttttttcccttttgggATTTTTGTTCATATCCAAGCCTCCCACGATGCAGTGCACACATTTGTGGTTGGGTCGTGGCACGTCATTGGCTGGCGAGGGATGAAGGTGACTTTGAAGAATTGTGATGTCAGGTCACCCGTCACCTGCTCTCTCTTATGGAGGCTGTGTAGGGAAAGGGCAAAAGCACATTGAGAAGCAGAGTGATGTTCCAAGAAGACACTCTCGCTTATCTGTTGAGAGTGAAAGCATATTTATCGAGATTccttacagtatatatataaatatatatatatacatatatatatctatatatttgtaTCAGTTGTTTTATTGGTGTCTCTGTATGTTTATTGTCGATTGTTGTATGTTGTACATTTGCAGATTATTATCAGATTTGATTGAAttgaattttgatttagttttattttcgtATGTTTTAATTGTactgtattttggtttgtggtctgtatatatatacacatatataatggCTTATTTTGCACACTTACCTCCCCCTCCTTATGCTTTGTTGGTGTCTTTGTTTTCAATTATTATTTCAGtggcatttattttaattcaggaACACTAAATCTGAGGGCACTATTTAAACTGCAGACTGTAAAACAGAACTTTCTGTGGTCTCTGGATGAAGGTACCAGACTTCCTGTATGCAGGAACCAGAAATCCAAAGTGAAAGAGCCTCCTGTAGGTTAGAATAAGTGCTGACCCGTGTTCTGCAGCATTAGGATGTCTGTAGCTTAAGCAAGGCTTAAGACCTTCTGACTTGGCCAGAGCCTATTTCATAACTGCCAAACAAAACCTTGACCAAATCCCTGCTCCAATCATCCTCGCTCCCGAGGCCTGCTGCCAGCCTACCTCTCTAGTGATTAGCCGATTAGCCGATTAGCGACAGTGTGCTTGTAGATCTACAggaaaaagccatttaaagccGAGGTTTTTCACTGCAGGAAAGTTGGAAAGCAGAAATCTGTTTACACGGACCTGACGCCCCAAAGTTAGCTACTGGCTCTGATTCATGGCCAGCTAACATTAATCAAGCTAGCATTAACTACATCACCATGTGAGaaacatattaattatttaatgaattgAATTTGGTGCTAGATAAAGGAACGCACAAAACCCTTTGTAGGGTAGAGTTTAGCTCTGGTCCTAAATTATAACATTTGTAACAAACTGATTTGTGTAATAAAGAGCTTTAGGATCTTATTAATAACAGTTGGAACTAAACtctacacttttaaaaataaaggtgctttaaatgcttctttaggggctttaaatggtttaaatggtACTTCTATGGTATCACTATTTGaagcaccttttttttaaagagtgaatTCTCCTCATTACATGAGAATCAgatttagctattttattatatgccatgtttattaatgtaCCCTAAGGCCATCACACACTGGTTGCGCAAGCCATGCACTGAAGCATTGGAGTAAAAACTgaagatttgtttatttttaaaacgttGCAGTTAAGCGAACTGACATTTCATGATTATTTCTAGATATCTAGATAATTTATTGTCAAATGAGTCATCTTTCCCAGTTTTCCGCATCTGTCACCCAAAAGGGATGTTGTACAGAGCTTTACAGAGCCAGTCTACTCTAAATACTAGAAGAAATTCCTTTAAAATCTGGTGTGTGGTGGCCTTTACAGTACCTGGGTTCTTTCAGAGAATTCAGTTTAGAGTTGAAACAGCTGCAAATTTGAGGTGATATAAAGCATCTTAATGGGGAAAATGGATTACTAGACCTGCGTTTACATCTGCGTCCTTCTCACTGAGCTTTCCTCATGTGTTTCTTCTACAGTTCAGAGTTTTACACCTACAGACAGAGTTTGAACATGTGACAGATCTCACTCTAGTGGCTTCCTAACCTTGTGTATGTAACCgtgcccttgctctctctctctctctctctttctctccttctctctctttctctacaaaTTTGCCTTTTGCTTCTTCTCTGCGCATTCCTCTTCCTCGCAGtgcacttttttctttctttcttttttgtttgtgtgttgttcACCTAATTGTTAGTgcgctttttctttcttttatcttttgctttattgttttttttctcgaATTGTgcgatttttaaaaactgtttttaattgtGAAGATGTCAGATTGTTTTATCAGCTGTGAACGTTCCTGTAATGTGGAAAATGGTGGTGTTATTGTGTGGTGGGGTTGtgtatggtggtgtgtgtgtatgtgtgcgcacGTGTTTATAGACGTGCGTGTGTGGCTGTGTAGTgcaatttcagttatttttgttttcctttcttttctttttgtcattGTAATGCTGAATTGTATGTTTTATCCCCCCTCTCACTATCTCACTATCTGTCCTGCCTTTGTCTGGAATGGAGAGGCAAAGGATATGAGGGgcaaacaccaaaaaaataacatcTATTTCTGTCTATTTACAATCGAAACGAAGCAACAAGCACAAAGAATAGTCAGGCACAACAagcactatacactacacactgtcACGCTGCACACATGCACTCTGATCTATTGATTTATAGCCTCTTGGGAACATACTATATACTGTAGGCCCTCATTGATTTAGTCTTTACATCAATATCTAGGTTACTGTAGTGTGGAACCAATTagttgtgttttaaaaatgttttttttcttgctcaCAGCAACACAATCGTACCTAAATATCAGTGTATCGCTTACTTATTTGAAATGTTATGACAAGCCAGAGAATGTACCTGAATACTATATGACCAATGTTGAGAGATAGGAAAGGATTTCTCTTCCAGTAGTTTAGATGTTAGATATATAAGGTCTGACCTCGTGTCACGTCTGTTAAGAGTAATATTTATAGAATATAATATGATAACCAGCTTAATCTATATGCAATAAAGAGGAGATGAAAAACACAGTTCATAGCAGCAGTAAAGCCCTCACATATCTGCACATCAGCCCAACactactatatattatatatcgcAGCTCTTACTGATGATTCTGTCGTAGGCCGTGGATCCCCCACAACTTCTCTTCCTCCAAGAGGAAGAACAGTACAATGAAGCACTTTAAAACacttacatatacacacacacaaacatacacacacaaaagtcAAAATCCCTCTTCTTGAAGTCCATATCTCTCTGTAATGAATGGGgagattagtgtgtgtgtgtgtgtgtgaaaacacttgAGTGTGAAAGCTATGAAACTGATATTACTGCAGTCGTCTTAGTCTTTGTTTACCATGCAAAACGTGAAGACAGTCCAAATGTTGCATTCCTTGTCACAGATTgttgttcaataaaaaaaatgattatgatgatga

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102682 lncRNA upstream 69688 24289392 ~ 24291726 (+) True G76202
TU102676 lncRNA upstream 80624 24279494 ~ 24280790 (+) True G76197
TU102532 lncRNA upstream 294025 24065552 ~ 24067389 (+) False LOC103035272
TU102480 lncRNA upstream 319798 24040374 ~ 24041616 (+) True G76060
TU102478 lncRNA upstream 323553 24032100 ~ 24037861 (+) False LOC103038709
TU102727 lncRNA downstream 39360 24441085 ~ 24462559 (+) True G76217
TU102729 lncRNA downstream 52486 24454211 ~ 24456691 (+) True G76219
TU102738 lncRNA downstream 125906 24527631 ~ 24563160 (+) True G76225
TU102739 lncRNA downstream 159939 24561664 ~ 24586132 (+) True G76226
TU102723 lncRNA downstream 165079 24566804 ~ 24659544 (+) False LOC111193114
XM_007235125.3 mRNA upstream 2239 24342743 ~ 24359175 (+) True LOC103029535
XM_007235137.3 mRNA upstream 135700 24211986 ~ 24225714 (+) True drd4
XM_007235139.3 mRNA upstream 229380 24120508 ~ 24132034 (+) True ap4e1
XM_007235138.3 mRNA upstream 244120 24109205 ~ 24117294 (+) True LOC103032917
XM_007235142.2 mRNA upstream 253590 24083792 ~ 24107824 (+) True myo5c
XM_007235122.3 mRNA downstream 24404 24426129 ~ 24647549 (+) True LOC103028282
XM_007235121.3 mRNA downstream 323419 24725144 ~ 24740083 (+) True fads2
XM_022672386.1 mRNA downstream 400277 24802002 ~ 24860926 (+) True myrf
XM_022672387.1 mRNA downstream 402708 24804433 ~ 24860926 (+) False myrf
XM_022672385.1 mRNA downstream 402710 24804435 ~ 24860926 (+) False myrf
TU102670 other upstream 100908 24258509 ~ 24260506 (+) True G76192
TU102479 other upstream 323553 24032100 ~ 24037861 (+) True LOC103038709
TU102363 other upstream 443811 23915791 ~ 23917603 (+) True G75974
TU102309 other upstream 873544 23487530 ~ 23487870 (+) True G75938
TU102047 other upstream 1588853 22755152 ~ 22772561 (+) False LOC103028957
TU102912 other downstream 471675 24873400 ~ 24880941 (+) True LOC111193110
TU102913 other downstream 471675 24873400 ~ 24879892 (+) False LOC111193110
TU102930 other downstream 545063 24946788 ~ 24948149 (+) True G76358
TU103035 other downstream 782360 25184085 ~ 25184732 (+) True G76423
TU103131 other downstream 892776 25294501 ~ 25296468 (+) True G76464

Expression Profile