RNA id: XM_007235126.3


Basic Information

Item Value
RNA id XM_007235126.3
length 3784
RNA type mRNA
GC content 0.45
exon number 9
gene id pnpla2
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 24322366 ~ 24336222 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCCCTCCTCAGCGGAGTTTGACAGCTTTGCTATGAAGGAGAGAAACTTCTCCAAAACAGGTTACTTAACCAGCCGCGTTACGAGAACTTACTGAACAACACCCACAGCGCGCAGATAAGCGGTTTGGGGGACACGAGGACTGCTAACTGCCCGTCATAACCATTTTAACACGTTTTAAATCGCTTTATTGCAGCTTTCTGGACCAGGTTCAGCGTTGTTCAGCGGTGAACCCCGAGGTACACAGATCTACACTCCGTGAGCGCGGACTGCAGCAGCTGACGCCCGGTACACAGAGCTGCATGTGTTCAGAGTGAGGATGTGACCTGGTGTGTTATGTTGTGAAATGAAGGCCTGAACTAGAGTCCAGATTAACCTAAAGACTACAGAGCGACTTTAACCTCTCATAGCGCGCTTTAAGAGAAGAAGataaactcagcatgtttccccTCGACTCGCCCTGGAATATCTCCTTCGCCGGCTGTGGGTTTCTGGGTATTTACCATGTGGGGGTCGCCAGCTGTCTGCAGGAACAGGCGCCCTTTCTGGTGGAGAACGCCCGGCACATCTATGGAGCCTCGGCCGGAGCCCTGGCCGCCTCTGCCCTGGTCAGCGGAGCCTGTATGGGGGAGGTCGGGGCAAGCAACATTGATGTAGCAAAGGAAGCAAGGAAGCGGTTTCTTGGGCCAATGCATCCCTCCTTTAACCTGGTGAAGACTTTGCGAATCCTGCTGCACCGTTTACTGCCCCCTGATGCTTATAAGAAAGCCACAGGCAGACTGGGTATCTCCCTGACCCGCGTTACAGATGGGGAGAATGTACTAGTGACCCACTTCAACAGCAATGAGGAACTGGTGCagGCATGTGTTTGCAGTGCATACATTCCAGTGTACTGTGGCCTTATACCTCCGACCCTGCAGGGAGTGcGGTATGTGGATGGTGGAATCAGTGATAATTTGCCTCAGTATGAGCTGAAGAACACCATCACAATTTCTCCGTTCTCTGGGGAGAGTGATATCTGCCCACGAGACACCAGCTCCACCAACCTGCACGAGCTCCGATTTACCAACACCTCCATCCAGTTCACACTTTCCAACCTGTACAGAGTCACCAGAGCACTGTTTCCTCCTGACCCACTGGTGATGAAGACCATGTGCAAGCAAGGATACAAAGATGCACTGCATTTTCTAAAGATAAACGGTTTGTTACAGTACCGGCGGCCACACCGTCCTTTGGGGAACGGGGCTGTAATGGGTGAGGAAGACTCTGATAATGAGGATGAAGAGGAAAGGCATACAAGAGAAGGGGAGCTACACCATGATGCTCATTCCAACATAGAGGAACACATCTTTGAACATTTACCTCCACGACTGCACAGAGCTCTGGTGGAGGCCTGCAGAGAAAGACGGACCCTCCTGGAGTCTCTAAGTAATATGTTTCCTGTCAGGATGCTGTCAACCATCTTGATCCCTTATACCCTCCCACTGGAGTCAGCTGTCTCGATGAGTATCAGACTTTTGGAGTGGCTGCCTGATGTACAGGAGGATGTGGGCTGGATTAAAGATCAGACAGTGAAGCTGCTGCAATATGTTGTACAAAATGCTGGGAGGAGTGTATCCCAACAGATGTCTGCACGATTTTCCTATCAGCTGGAGTTGAAACACGCTCAGTCTGCACCGGCTTCATTCAGTACTGCCAACTTGCTGCCAGGCTGGGTATATGGGGGCAGCTCGTCTGTGCTGGATGCCTTCCAGCGTGTGGACCAGTACCAGCGGCAGCTGCTGCCGAACCTCTTCTGCCTTAACCTCAACCTACGTGGCTCTTTCAGTACTGGACCTTCTCAGACTACAGCCTCCACTCCACCACTCCCTATTCATGAAGAGACAGATGAAGGTTTGATCATGGGTCCTTTGGGGAGTTCGAACCCCATCATGATCAAGTAAAATCTGTACTAACTGACTATGCCTTGGCACAATGCACCATTCAGTACATGGACTGTCTAGCTattgaactttttttaaacaaggacCCTGAGCCTCAACCATTCTGAAATATACACACTCAGAATTTCAAATCACAGCAGGGGCAACATGAGCATCAAGACAAACAGGAAAAGagttgtaattatttattagttgACTACTTATAAGCTGAACAGAACTGGAGACAATAAGTATTTTATGTGTGATGCCTGATTTAAGCTGAAATGTACACAGATGAATGACATGCATCATAACTGTGCTAGAGACATCTGTGTCTGTCAGTAGTGCTTAGCTGCGTCATCCATAGACATGTCTGTGCAGACTGAGGCAAACACAGCCTGAGTTGTTTATTACAAACTAACATTATTTGTTATGACGGGTGTCAAAAAGTAAAGAGCATTTGTTTAGCATCTTCCTCACAATGTGGCAATGTTCACATTAACAGGTCAAGTGCCTTATTTGCCCTATTTTGAAACCAATTTTCAGGGCTTTGTGGACAACATCACATCAGATTTTAATTACTTTCATATGCGGTCCTAGATGTGTGTCCCATTTGTGGGCATGCATCATAAAGTAGGGCGGTCAGATCATATTTTATGAATCTGTTTGCCTGTACGCAGCGCTGTCCAGTGCTGCTGGggatacaaatattttaatgtatttccaATGAATAGTTTGTAAACTGTGACTTAGTAATGCACATCTCCATAATGAGTCCCTAAAGAGACGGCATGTTGAACATTACAAACACTCCCAATCATATTTTAACCAGTCTTTATTAGGTGTTCTGATTTAGAGACAGGTTTGTTCACTTTACAAGCAGATACAGCTCTACtgcatttatgaatatgatctgcCAAATTCGATCTgggcaaaaaaatctaaattagtcAGTGagtcttgtaatgtgaacgtagtctCCTCGTGgttcttcatgaggtagaggcTCTACACTTTTGCTTGTAGCTCACCTGTAAACCTGAGAATTGAACTCTGTACATGATCAATaggtttaaaatgtaatgtaatattgtaCGTATTATGATAGATCAGGACGTACATCAGACATGTaataatttatgtaaataagTTTTCTTTTTAGGACGAGTGTTTGAAAAAAGAGGTGAAtgacatgagacaaaaacaacagtTCAGTTCAGATAAGAGTCTAAAACATTGTTACTATTTAGGCCTTTAGTCTTGAAATGCCGACCATTCCAGTATATCTGAGATATTTGTTAAGAAAGAGATGTGTGGTTTAATTGGTTTGCCATGATGTGGATTCgagtgtgtgtaaaagaaaaaGCATAAGAAAATGTACAGGTGTTGCTCCACACCCTGAACTAAGCTCTCAGCTACTTGCTgtactcatatatatataaggaagCAAACAGAGAAATCTTATCTGCTTGCATCCAACACATAACGAAGAGGATGTTAATGTAATGTGAAAAGGCAGGAAGAGAGGAAGTTGATGTAAGTTGACATGAGCTACTGTAAAGAGTAGCTTGTAACAGAGTGTCTATGTAACAGAGACTGTCTGAAGAGCAGTATGTTTGTGGCGGACCACTCTGCATCGTGCAGGTTAGGTTGGTTTGTTACTATAAGTGTTGTTCAATGCAATGTTCAATGCAATGTTCAAAGCATTCATTGATGTATCAGGTACTGTACAATTGTATTACTGGATCTCAACAGTTGTGTggtctgtttcttttttttatatgtgattTGCATGAAGTGATATATAACACTGGACTACCTTTATGTATCATATTGCAAATGTTAAGAAAGTGTAAAACCTACAA

Function

GO: NA

KEGG:

id description
K16816 PNPLA2, ATGL; patatin-like phospholipase domain-containing protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102763 lncRNA downstream 43278 24278840 ~ 24279088 (-) True G76247
TU102752 lncRNA downstream 78524 24240912 ~ 24243842 (-) False deaf1
XR_002650265.1 lncRNA downstream 132053 24188383 ~ 24190313 (-) False LOC111193111
TU102626 lncRNA downstream 132062 24188344 ~ 24190304 (-) False LOC111193111
TU102782 lncRNA upstream 58990 24395212 ~ 24401713 (-) True G76266
TU102789 lncRNA upstream 191849 24528071 ~ 24538687 (-) True G76272
TU102795 lncRNA upstream 297605 24633827 ~ 24659292 (-) True G76274
TU102809 lncRNA upstream 378988 24715210 ~ 24715538 (-) True G76288
TU102816 lncRNA upstream 391089 24727311 ~ 24736269 (-) True G76292
XM_022672379.1 mRNA downstream 1562 24279477 ~ 24320804 (-) False LOC103030184
XM_007235130.3 mRNA downstream 1563 24279477 ~ 24320803 (-) True LOC103030184
XM_007235127.3 mRNA downstream 1564 24279477 ~ 24320802 (-) False LOC103030184
XM_007235131.3 mRNA downstream 48167 24262747 ~ 24274199 (-) True pgghg
XM_007235132.3 mRNA downstream 50032 24262747 ~ 24272334 (-) False pgghg
XM_007235197.3 mRNA upstream 370450 24706672 ~ 24710102 (-) True LOC103024275
XM_007235116.3 mRNA upstream 406547 24742769 ~ 24788358 (-) False eps8l2
XM_007235115.3 mRNA upstream 406547 24742769 ~ 24788358 (-) False eps8l2
XM_022672396.1 mRNA upstream 406547 24742769 ~ 24788357 (-) False eps8l2
XM_022672395.1 mRNA upstream 406547 24742769 ~ 24788357 (-) True eps8l2
XR_002650267.1 other downstream 134164 24184569 ~ 24188202 (-) True LOC111193112
XR_002650263.1 other downstream 1808642 22456331 ~ 22513724 (-) False LOC103024007
TU101746 other downstream 3049349 21270129 ~ 21273017 (-) True LOC111193105
trnat-agu_2 other downstream 3426190 20896103 ~ 20896176 (-) True trnat-agu_2
TU101364 other downstream 4222116 20087418 ~ 20100250 (-) False hsd17b12
TU102973 other upstream 578076 24914298 ~ 24920365 (-) True G76377
XR_002650272.1 other upstream 612822 24949044 ~ 24950022 (-) True LOC107197705
TU103036 other upstream 847987 25184209 ~ 25184469 (-) True G76424
XR_002650273.1 other upstream 952628 25288850 ~ 25301768 (-) False rab3il1
XR_002650274.1 other upstream 953660 25289882 ~ 25301768 (-) False rab3il1

Expression Profile