RNA id: XM_007235127.3


Basic Information

Item Value
RNA id XM_007235127.3
length 4088
RNA type mRNA
GC content 0.52
exon number 25
gene id LOC103030184
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 24279477 ~ 24320804 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGTTTTCACCGGAGGGGCTGGATGGCTCCTCGGTAGCCGGAGTCCTCCAcacctccctctccctccctctttctctctctctctgttcgtCTCTCTCTTAAGTTGATAAATTGAATTTGCCGGGAGAGACCGAGGAAGATGGCGGCCACTGACCGTTCCCGGTCCGAAGCTGCTAAGCAGCGGCGGCAGGACCAGCTGGCGCGGTGGCAGGGCTCGGAGACGGACCTGACCGGCGCCCAGGTGCGGGGCCACTCTGGCTCCAGCGGCTCGGTCTCGAGCTCCGGCCGGCGGCCCAAAGTGCGCTTCGCCCAGGGCGCCGTGTTCATGGCCGCCTGCTCAGCCGGAGACCGGGAGGAGGTGGCGGAGCTGCTGAGGCAGGGAGCTGACATCAACCACGCCAACGTAGACGGACTTACAGCCCTCCATCAGGCCTGTATTGATGAGAACGCTGAGATGGTGCAGTTTCTTGTGGAGAGTGGCAGTGATGTGAACAGAGGGGACAATGAGGGCTGGACACCCCTCCATGCAGCTGCTTCCTGTGGCTTCATCCAGATTGCTAAGTACTTGATAGAACATGGTGCTCAGGTCGGGGCGGTGAACAGTGAGGGAGAACTTCCTCTGGATGTGGCTACGGAGGACGTCATGGAGAGACTGCTGAAGGCAGAGATCAAAAAACAGGGTGTGGATGTGGATCGGGcgagaaaggaggaggagagggtgATGATGCAGGACGCCACATCTGTACTGTCTGGAAGCGGCTCTCTGGCCCCTCACCCCAACACTCAGGCCACTGCACTGCATGTATCTGCTGCTAAAGGCTACATTGAAGTGCTCAAagtgctgctgcagtgtggGCTGGATGTGGACAGCAGGGACAGTGATGGTTGGACCCCTCTGCATGCGGCTGCTCACTGGGGGCAGGAAGAGGCCTGCTCTCTTCTTTCAGAGCACATGTGTGACATGAACGCTGTTAATAACGTGGGTCAAACCGCCTTTGATGTAGCTGACGAGAATCTTGTTGATACtttggaggagctgcagaaaaaGCAAAatgcaATGCGTACAGAGAAGCAGAAGATTCAGCCTCCTGTCATTGAGACCAGCCCACCCATCTCTATGGCACCAGTTCGTCCTCGCAGGACGTCCATCTCTCGTATGAGCAGCAAAGAGAAAATCACGCTTCATGAGAGGGAGAAGCACCCGCCACCTGCCCTCCAAACCCCGCCCacggaggaggaagaggaggagtcaCAGAATCGCACAGCTGCCCAACCTAAAGCATCCAGCAGCTCCAATTCAGAGGAGGAGAGCGAATCAGAAAGTGACACTGAGTCAGaaaaagcaaaaactagGGAGCTGATTAACAACAAGCGCAACAGTGCCACTCCTGCGACAACCACCACTACAGCAGGAAGCACTACAGCAAACCAGGTTAAAAAGTCAGAGCCAGCACGGCCTGCGGTGACTGAGATGCCAGGCTCGTGGAGGACATCTCTGCGTAAGGCGGGCAGCTCAGTGACACTGGGCCCCTCAGGGGCCTCTGATGCAGCCGGTGAAACACTCCGGAGCACTGAGAGCACAGCAGGCATGACTCGCTCGGCCTCTAGTCCCAGACTTAGCTCAGATGCTGACACCAAGGAACCCAGGTTAGCCCGAGTGCAGCCCACTCCGTCCAGACGCTTGTTCAGCATTGCAGACACCAACACCAGTACCAGCACCACTCCGAGCCCTCCCACTGACAATACCAGCAgCTGGTTGAGCCGGAGCTCCTCGTACACTCGCAGGTTAAACAGCCAGTCAGGCAGTGATGTGACCAGCCAGAACCCCTCTTTACCTCGTAGCTCCTCTTACGGACGGAAACTCGATGACCCCTCAGTGACCTCGGTCACCTCACAGGGGACCTCTGGACTCAGCCGCCTCAACTTTTCTCAgagACTAGCTCAGGAACAGTCGGAGAAGAAGGAACCTGTCTCCACGACAACAACAACTACGACAACAGGCGAGCAGGAGACTAAGCAGAGGCGCAAgtcATACCTGACTCCAGTGCGTGATGAAGAGGCTGAAGCTCAGAGGAAGGCTCGCTCCAGACATGCACGTCAGTCTAGACGCTCCACTCAGGGTGTTACACTTACCGATCTCCAGGAAGCAGAGAAGACAATAAAGACGGAAAGCAAGGGGAAcgagaggaagaaagaggaggaggaaaaagaaACGAAGCAGAAGAAGGGAGAGGAAGGGGAGGTGAGCTGGAGATCTCGCATTGCGAACCTGCAGAAGTCTGATCTGCTGGGACTCACACACCCCCCTGGCGCCCCTCGCCCTGCTGACAGAAGAGGTGCAGAGGACAGTATTGATTTTGAAGAGCGAGCGATGGAGAGGAGGAGAGCGAGAGCACGGAGGAGAGAAAGATTAGGAGAGTTGGGAGATAATGAGCCCAGCGCAGAAGAGAGAAGTGGTGGGCAGGTCCCACAGacagacaggtataCAAGCATCAGgtctaATCTAGCTTTGAATGACTGTGTCATGGCAGGAGGCTCAGGCGTTAAGGATTATAAAAAGtTGTTTGAGGATCTGTCTAGAGAGAACAGTCAGCTGCAGTCACAACTACAAGAAACACAGAGGACTGTCTCCGTGACCAGAATTGAGCTGGAGAAAgcaacacaaAGGCAGGAGCGGTTCAGTGACTGCACTGCTCTTTTGGAGCTGGAGAAAAAGGAGAGAGTGGTGTTGGAGAGACGTGCAGCAGAGTTAGAGGAGGAGCTGAAGgttTTGGGGGATTTAAAAGCGGACAACCAGAGGCTGAAGGATGAGAATGGAGCGCTTATTCGAGTGATCAGTAAACTCTCTAAATAGAGGAcacgcaagagagagagaaagaaagaatgagtgaACGAAGGAGAGGGGGGACAGGAAAATAGAATGAGGGACAATCCACTCCTCCCCCACTTCACATCCCAGTGTGCCAAAGAAGAAGAGgagcgagcgagtgagagagagagagagagaaaagagaaggaaagggaATGTCACTTTCTTATGTGCACCATTTAGTTGAACTGCAGTTTGATCCTGATTCACACCTGTCTGCTTCTGAAGCCTGGAGATTCAactctcctgtgtgtgtgtgtgtgagtgcacgtGTTTGgtgtgtaagtttgtgtgtggaAGGGAGGGTGGATGGGTATGTGTGTGAAGCTACCCCTCAAATTACACACATTCATTAGCAGGAACTCTGTTTATCATAATCATCAGGAGGCTGATGGGCAGAAGAGATATGTGCGCtctcacacagatacacagagaaacacgcacagatacacacacacacacacacacacacacacagccagggaACATCACCGCTAAAGAGAAAGAAGGCCTGCGCAATCTTCTTAGACACCCACACACAACGTGCACAACATTCACACAAGTGTGCCACACACGCGTCATCACACAACATTCCACCGTTCTTCGGCAGCTTAAGTCTGCAGTAATTTTGCACCTTACATTACACTCCTCACGCATGCACGttgcacactcactcactcacacacacacacacacacacgctgatATAGCCATATGAAGTCTTCTCTTAACCTGAGTTGCCAACTCTGGGACCACTTTGTTGCACCTATCCAATACTGCCTCGGCTAAAAGCGCACGGCCACGGCAACGCTCCACCACAATCAATGGTATTGAATCAATGCAGctcatacacactacacactacacgcaGGGTCAGTGACATCAGTGCAAGCTCATGCACAGCTGGCACTCTACTGTTGTGCACAGGCCCGTCATGCTATGCATCATGTTTTTCATACACTTTATTAATAGAAAGTTGAAGAATCGGATGCTAtttttcatgtgtttatttttttttcttcgttgTTTGTGTCGAATCCTCACCCCTGTTGTTTGGAGGCGAGGAgggtaactgtttattatataaatggACAAATATTATTCCCTTTGAAATAATAATGCCATAAAATGTAATGTGATATTGATACCCCCCTTTCacatgttgttttttaatatatataaaacgaaTGTCAGCACTTAATAAAAGGTTGTGTAGTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102763 lncRNA downstream 389 24278840 ~ 24279088 (-) True G76247
TU102752 lncRNA downstream 35635 24240912 ~ 24243842 (-) False deaf1
XR_002650265.1 lncRNA downstream 89164 24188383 ~ 24190313 (-) False LOC111193111
TU102626 lncRNA downstream 89173 24188344 ~ 24190304 (-) False LOC111193111
TU102782 lncRNA upstream 74410 24395212 ~ 24401713 (-) True G76266
TU102789 lncRNA upstream 207269 24528071 ~ 24538687 (-) True G76272
TU102795 lncRNA upstream 313025 24633827 ~ 24659292 (-) True G76274
TU102809 lncRNA upstream 394408 24715210 ~ 24715538 (-) True G76288
TU102816 lncRNA upstream 406509 24727311 ~ 24736269 (-) True G76292
XM_007235131.3 mRNA downstream 5278 24262747 ~ 24274199 (-) True pgghg
XM_007235132.3 mRNA downstream 7143 24262747 ~ 24272334 (-) False pgghg
XM_007235133.3 mRNA downstream 18947 24240898 ~ 24260530 (-) False deaf1
XM_015601842.2 mRNA downstream 18948 24240898 ~ 24260529 (-) True deaf1
XM_007235136.3 mRNA downstream 20296 24240898 ~ 24259181 (-) False deaf1
XM_007235126.3 mRNA upstream 1564 24322366 ~ 24336222 (-) True pnpla2
XM_007235197.3 mRNA upstream 385870 24706672 ~ 24710102 (-) True LOC103024275
XM_007235116.3 mRNA upstream 421967 24742769 ~ 24788358 (-) False eps8l2
XM_007235115.3 mRNA upstream 421967 24742769 ~ 24788358 (-) False eps8l2
XM_022672396.1 mRNA upstream 421967 24742769 ~ 24788357 (-) False eps8l2
XR_002650267.1 other downstream 91275 24184569 ~ 24188202 (-) True LOC111193112
XR_002650263.1 other downstream 1765753 22456331 ~ 22513724 (-) False LOC103024007
TU101746 other downstream 3006460 21270129 ~ 21273017 (-) True LOC111193105
trnat-agu_2 other downstream 3383301 20896103 ~ 20896176 (-) True trnat-agu_2
TU101364 other downstream 4179227 20087418 ~ 20100250 (-) False hsd17b12
TU102973 other upstream 593496 24914298 ~ 24920365 (-) True G76377
XR_002650272.1 other upstream 628242 24949044 ~ 24950022 (-) True LOC107197705
TU103036 other upstream 863407 25184209 ~ 25184469 (-) True G76424
XR_002650273.1 other upstream 968048 25288850 ~ 25301768 (-) False rab3il1
XR_002650274.1 other upstream 969080 25289882 ~ 25301768 (-) False rab3il1

Expression Profile