RNA id: XM_022672376.1


Basic Information

Item Value
RNA id XM_022672376.1
length 3295
RNA type mRNA
GC content 0.48
exon number 32
gene id LOC103036104
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 23925268 ~ 23974335 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GATGTGCATTCGTACAGAGGAGAATCGTCAGGAATAGAATCCAGATGTGGAAAGGCCACCAAAAATGGGACGTGCCTTCAACATACTGCACTCCACCTGTTCAAAGGAAAGCTATTGCTAAATCTGGTGTTCAGCACCTGAGCGCCCAGTCCAGTGCCACAATGCCGAACAAGTGTGAAGCTAACCGAGAGATCTCCCAGACAGTCGACTGGACCGAAAACGCTCTATTTGGACAGCACGTCTGGTTTGAGACCAGCCTTTCAGGAGATTTCTGCTATGTTGGAGAGTCTCACTGCTTTGCCAAATCACTGCAAAAATCACTGCCTCGCTACAAATGTGCTGCCTGCAAAATATCTGTTCACACAACATGCATGGAGCAGTTAGAGAAGATTAATTTCAGGTGTAAGCCTTCATTCAGGGAACCAGGCACGAGAAACGTGCGAGAGacTACTTCTGTAAGGCATCATTGGGTTCACAGGAGGCGACAGGATGGGAAATGCCGACAGTGTGGAAAGGGTTTCCAACAGAAATTCTCCTTCCACAATAAAGACATAGTGGCCATCAGCTGCTCCTGGTGTAAACAGGCGTATCACAATAAGGTGACGTGCTTTATGCTGCAACAGATTGAGGAGACCTGCTCTCTCGGTGCTCATGCTGCTGTTATAGTGCCTCCTTCTTGGATCATCCGAGTTCGCAGACAGCAGGCATCACTGAAGTCGAGCAAACGAAGAaagaaaacatctttaaaaaataagggCAGCAAGAAAGGAGCAGAGGATGggaaatggaagcactttataGTGAAGCCAATTCCCTCCCAACTCATGAAGCCTCTGCTTGTGTTTGTGAACCCAAAGAGCGGAGGAAATCAGGGATCCAAAATTATCAGGTCTTTCATGTGGTTCCTAAATCCACGACAAGTGTTTGATCTCTCTCAGGGAGGGCCTAAAGATGGGTTAGAAATGTACCGCAAGGTGCCCAACTTGCGCATCTTGGTATGCGGAGGAGATGGAACGGTTGGCTGGATCCTGTCTGTACTAGATGATCTGCAGCTGAATCCTCAGCCTGCTGTAGCTGTTCTACCTCTTGGCACAGGAAACGACCTGGCCAGAACACTCAACTGGGGAGCGGGCTACACAGATGAGCCTGTGTCTAAAATCCTGTCTCATGTGGAGGATGGGAACATTGTGCAGCTGGACCGTTGGAACCTGAGCGTGGAGCCCAACCCGGAGGCCACTGAGGATGAGAAGGACGAACACCAGACAGACAAGCTTCCGATCAACGTCTTCAATAACTACTTCAGCTTGGGCTTTGATGCACATGTGACTTTGGAATTCCACGAATCTCGAGAGGCCAAACCTGAGAAATTCAACAGCCGTCTTCGGAACAAGATGTTTTATGCAGGGACGGCATTCTCTGACTTCCTCATGCGAAGCTCTAAAGACCTATCCAAGCACATCAGAGTTGTGTGTGATGGCATGGACCTCACTAGTAAAGTTCAGGAGCTGAAGCTGCAGTGTCTGCTCTTTCTCAACATTCCTAGGTACTGCGCTGGTACAACACCATGGGGTAACCCGAGTGAGCATCACGACTTTGAGCCTCAGAGGCACGATGACGGCTGTATTGAAGTTATTGGATTCACTATGACGTCTCTGGCCACTCTGCAGGTGGGTGGTCATGGAGAAAGGCTGCATCAGTGCCGTGAGGTTATGCTCACCACTTTCAAGCCCATTCCAGTGCAGGTGGATGGTGAACCCTGCAGACTGGCCCCCTCAATCATTCGCATCACCCTCAGGAACCAGGCCAACATGGTACAGAAAACCAAGAGGAGGATCTCCCTCCCGCAGCTCAATGAtCAGCAGCCCTTCTCTGAACAGCTGCAAATCCAGGTTAGCAGAATCAGCATGCATGACTACGAGACTCTACACTATGATAAAGACAAGCTAAAGGAGGCCTcaattcCTCTTGGCATCATCACAGTCTCTGGAGACAATGATTTGGAGACCTGCCGACTGCATATTGAGAAGCTGCACGAGGGACGTGGTTCAGACACTGTTACTGTACCAAAGATTTCACCAAAATGGTGCTTCCTAGACTcTACAACTGCAGATCGCTTCTACAGAATTGATCGTGCTCAGGAGCATCTAAACTACGTGACTGAGATCTCCCAGGATGAGCTTTTTATCCTGGATCCGGAGCTGGTCACTAAGGAGACAGTGGGCACGTCTCCAGGAATGCCAGGAATGGTGGAGGAAGTGGCAGAGAGCTCCAACAGCTCTGACCAGTTTGCCTTCCCAGCAAACTCACAAGCCCCCTCTCCACTGTGCAGGGCTGCAGGTCAGAGAAAGCGAATGTCCTGTGATGGCACCAACCCAGAGGGACAGACGGATGCGGCGGTGTCTATAAATGAAAGCCTTTGCAGGTCAGATGATACCGTCTGGAATACGGCTGATAAAGacacTATTAAGATGCTGATTGGAAGTGTGAAGTCTGGAAACTTCAAAAAGTTACAGGAGCTGCACACACAGGGTGCCAGTCTGGCAGTGTCTGATGCACTGGGCTGCACTCTGCTCCACTATGCTGTAGACGTTGGCAGCAAGGAGATGGTCAAATACATCATAAACAATGCTCCGCCGAGTATACTGGATGCTATGGAAAAAGAGACTGGTGAGACAGCTCTGCATAAGGCTGCAGCTTCGTGCCACAGGACGATCTGTGGGTATTTAGTGGAGGCGGGAGCTTCCCTCATAAAGACTGATCTACAGGGAGACACTCCTAAGGTGCATGCCGAGAGAGCTCTGGACTGGGAGCTGGCCGAGTATCTGGAGAACCGGCAGCACCACCAAATGATCCAGAGGGACGACCAGGAGACAGCAGTGTAAATAACTGCCTTATCTCTCCTTCCTTTTTAAAACTTCCTCCGGAAAAAAACTTTCCTTTTATCtggaaaaacacatttacaacatGGCTGAATGAGAACACTGGGACAAAATGTCAGCAGAAAAGAGGCTGTCGTTTTCTCTTTTGATTGTAATGCcaaataatttatcatttttgacATTTCTGCGTGAAAGAATGCATGAACGTGCTTGTCTTGCCGTCATACTGGGATTGTTTGAGCTACATGCTCATGCTACATGCTGCCTGCTCCTTAGGAAATAATGTGCAAAACTTCCTGGACTTCAGGGCTGGAGTAACTATATGTATTATGTGGCTCTTGAACCGTATAAAGCATACTGTCCAAACctcaaaaaaattgttttttagaGAAGGGAATAAATTGAGTGAAGCTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102449 lncRNA downstream 14763 23900642 ~ 23910505 (-) False G76042
TU102448 lncRNA downstream 14763 23906744 ~ 23910505 (-) True G76042
TU102445 lncRNA downstream 29057 23895354 ~ 23896211 (-) True G76040
TU102439 lncRNA downstream 39096 23881814 ~ 23886172 (-) True G76035
TU102425 lncRNA downstream 80860 23843055 ~ 23844408 (-) True G76023
TU102501 lncRNA upstream 12414 23986749 ~ 23987527 (-) True G76069
XR_002650268.1 lncRNA upstream 21075 23995410 ~ 23999176 (-) True LOC111193113
TU102504 lncRNA upstream 35635 24009970 ~ 24016230 (-) True LOC103037768
XR_453278.3 lncRNA upstream 39471 24013806 ~ 24015454 (-) False LOC103037768
TU102528 lncRNA upstream 48794 24023129 ~ 24029595 (-) True G76086
XM_007235162.3 mRNA downstream 3046 23915791 ~ 23922222 (-) True LOC103039841
XM_007235170.3 mRNA downstream 92200 23827214 ~ 23833068 (-) True LOC103042310
XM_007235172.2 mRNA downstream 152599 23747948 ~ 23772669 (-) False kcnc1
XM_007235171.2 mRNA downstream 152599 23749684 ~ 23772669 (-) True kcnc1
XM_007231194.3 mRNA downstream 507123 23370623 ~ 23418145 (-) True spg11
XM_007235161.3 mRNA upstream 62922 24037257 ~ 24043153 (-) True LOC103039440
XM_022672398.1 mRNA upstream 176090 24150425 ~ 24156021 (-) True LOC103033668
XM_022672394.1 mRNA upstream 182804 24157139 ~ 24180647 (-) False LOC103025218
XM_007235198.3 mRNA upstream 182804 24157139 ~ 24180647 (-) True LOC103025218
XM_007235133.3 mRNA upstream 266563 24240898 ~ 24260530 (-) False deaf1
XR_002650263.1 other downstream 1411544 22456331 ~ 22513724 (-) False LOC103024007
TU101746 other downstream 2652251 21270129 ~ 21273017 (-) True LOC111193105
trnat-agu_2 other downstream 3029092 20896103 ~ 20896176 (-) True trnat-agu_2
TU101364 other downstream 3825018 20087418 ~ 20100250 (-) False hsd17b12
TU101358 other downstream 3893241 20027162 ~ 20032027 (-) True G75207
XR_002650267.1 other upstream 210234 24184569 ~ 24188202 (-) True LOC111193112
TU102973 other upstream 939963 24914298 ~ 24920365 (-) True G76377
XR_002650272.1 other upstream 974709 24949044 ~ 24950022 (-) True LOC107197705
TU103036 other upstream 1209874 25184209 ~ 25184469 (-) True G76424
XR_002650273.1 other upstream 1314515 25288850 ~ 25301768 (-) False rab3il1

Expression Profile