RNA id: XM_007235156.3


Basic Information

Item Value
RNA id XM_007235156.3
length 8371
RNA type mRNA
GC content 0.42
exon number 8
gene id prdm11
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 24015475 ~ 24029643 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGGATACGGATCAGTGCAGTGAGTCTGGATTAGCCTCAGACTAAAGTTTACTGTCTGTGGTGAATCATTACTGGAATTGACTTAGTTTATAGTTTGACTGAATAAGAGTCTTAAAGAGGGCCAAACCCCTTTCAATAGAGTTTAACAGTGACGGTGTCTGTGCTGAGCCCGTGTGTGAAGCAGTTTCAGCCCGTGTCTGAGTTTTATGGCGGAGTTGAGTCTCGCTCTGTCTGAACTGACGATCAGTTTCTGTTTCCAGTCATTCTGCACGCTCGCCCCGCTCCTCCATAAACACAGCTTTCTTCCGTTTTTCCATGTCATttcctgtaataaaaaagatggtGGTCAAAGCTGAGAGAAGCAGCTGACTCCTTATAAATGTTTGCGATGATAAACTTTACATCGCCCGGGACTAGTGCCGCTGATCCGCTCCTCCGGAGCCCCGGCGCCCGCCGCGCGGGGGCTGAAGCCGCGGCTGGAGTGTAGGCAGCCGGGCGGAGCGCCCTGAGCGGACCGCGTTTCTGCACAAGCTGTAATATGTTTGCGTGAAAAGAGGCACACAGGGACTCGCCCTCCTCCCTGCACTGACCATGGCAGACTCTGCCACCTTTCAGACTGAGCCATGCACAGAAACTGAGCCAGACTGCAGAACAGGAGTCATCAATGAGAGTTCTTCTGAAGAGCCAAACAAGAAACTTAAAGTCAACCATGAGCGCTGTGCCAAAGTTGGACAACAAAATGTTGACTTCTGGTTCTGTGAAGAATGTAAGGAGCCTTTCCTGAAGGAATGCCCTACCCACGGTCCCCCTGTGTTTGTACCTGATACTCCCGTTTCACTGGGTGTGCCTGATCGTGCAGCTCTCACTGTCCCTTCAGGCATTGAAATCATTAAGAAGGGCCAGGAGGTGGATGTTTGCTGCGTGGATGAGAACATCCCAAGGGGAGCACTCTTTGGTCCTTACCAAGGCCAACTGATCGCTCAGGACAAACAGTCAGGGACGCACTCGTGGATGatTGTTAATGAGGACAACACCTACAAATCTATTGATGGCTGCGATGAAACTAGAGCAAATTGGATGAGatacattCGGATGTCTtcagaagagagtgagagaaaccTGAGTGCATTCCAGCATGGTGAACACATTTACTTTCGCATGTGCCGCAGACTTAAGATGAGAGAGAGGCTTCGTGTGTGGTACAGTGATGACTATATGAAACGACTGCAGAGTGTATCCCAGGACAGTATCGACCGCAATCTGGAGACAGGGTCAAAATTAGAAGATCACACTCATCACCACGAAGAAACTCAAGGCCCAATTCTCCGCTCAGCTTTACATGGAAGAAGAACCCTCAGCAAGCACGGGAGTGATGAGCCAGACAGCCAACCGCAACCCAAGAAAAAGAAGATTGATCTCATATTCAAAGATGTCCTAGAGGCATCACTGGAAGCAAGCCAAAAGCAAGACAATCCACTGAACAGCACTTTGTCATTACCAAGATCAAGATCACAAGTCAGCAATGCCTTTAACCAGTCCGGGTCGTTTTCGCACCATGTAGCGGAGTCATTATTTTGCCAAACTGAAAATAAAGTGGTTGTTGTTTCCGCTGGACTGGCCCCTGTGGAGCAGCTAGAGGGTTGCCTTGATGAGCGATATGTCAAAATGGAGGAAGCAGAGGAAGAGCCTGCTGTGACTAATGATGGCCCGTCAACATCTTTCTGCCCAAACTGTGTGAGACTAAAGAGACGGATACGTGAACTGGAGGCAGAGCTACTCCGCTTTAAACAGCAAGAGCAGGCTGAGATATTGGCACCATCTGAGCCTCTGCCCAGTGATGAAATTAGAGCAGTGGAGGCCATGACACCTATCCCAGTCGTGTTGGAAGAAGATGACCAGGATGTTGACTCCGCAGACGAGTCCATAGCTGCTGACATGATGGTAGCTACCGATGACACTTCCAAACTATCTGTTGGTCCGGGCAGGAGGATCCGCCGCTTCAAGCAAGAGTGGTTAAAGAAGTTCTGGTTCCTACGTTACTCTCCGACATTAAACGAGATGTGGTGCCATGTGTGTCGCCAGTACACCGTCCAGTCCTCAAGAACGTCCGCTTTCATCATTGGCTCCAAACAGTTCAAGATTCATACCATTAAGCTCCACAGTCAGAGCAACCTGCACAAGAAGTGTCTGCAATTGTACAAGCTGCGCATGCATCCTGAGAAGACAGAGGAAATGTGTCGGAATATGATGACGCTCTTCAATGCTGCCTACCATCTTGCAGTTGAAGGACGGCCATTCTCAGACCTTCGACCCTTGGCCGAGCTGCTGAAGAAGTGTGAGCTGAAAGTAGTCGATCAGTACATGAATGAGAGCGACTGTCAAATTCTCATCCACCACATTTCTCGGGCATTTAACGAGGACTTGGCAGAAAAGATCCGTCTCTCACCTTTCCTTGGTGTAATCATGGATGGACAGAATGATGATTTACTCGCAGATACTGTTGCAGTTTACGTGCAGTTCCTAACAGCAGAGGGTCCACCTGCGACTGAGTTTCTCTCTTTGCAGAGGTTGGGTGGAGGCAATGTAGATGGCTATCTCCAGGCTGTTGACCGTGCCTTTGGTGTCCTAGGCTTGAGGTTTCAGGACATGCTTGTGGTTGGTTTGGCAGTAGATGGGTCTAACATCTCCTCTAACCTCAGAGCAAACCTCTACATAACCGTACGGAAGATCATTCCCTTTGTCTTGTGTCTACCAGTGATGATCCATCGTCCCCATTTGGAGATACTCGATGCCATATGTGGGAAGGAACTTTCATGTTTAGATGATTTGGAGAACAACTTGAAGCAGTTGCTGAGCTTCTACAGATATTCCCCTCGCATGATGGCAGAGTTGAGGACAACAGCACCTACTTTGTCAGAGGAGACCGAGTTCCTTGGGGATATAAGAGCAATTCGTTGGATCATTGGGGAGCCTAATGTCCTAAACGCCCTCATCAAGGACTACCTGGAAGTGGTCACCCATCTTAAGAGCATCAGCAACCAGACTCAGAGAGGAGATGCATCAGCCATTGCTTTGTCTCTTCTGCAGTTTCTTATGGACTACCAATCCGTCAAGCTCATATATTTCCTCTTGGACATCATTGCTGTCCTGTCACGCCTTGCCTTCATCTTTCAAGGAGACTATCTTTTAGTGTCCCAAGTGGATGCCAAGATCGAGGAGGCCATTCAGGAGATCGGCCAGCTGGTTGATTCTCCAGGAGAGTACTTGCAAGAGTTTGAGGAAAACTTTCGCGAGAGCTTCAATGGTGTAGACCTGAAGAACCTGCGAGTGGCTGAATCCAAGTTCCAGTCCATTCGGGAAAAGATCTGCCAAAAGAGCCAGGGCATTCTAGCACAACGCATTGACCAGTGCAGTCACTCCATTGTGCAGGCTTGCAGGGTTCTTGATCTGACATCTTGGCCACTCAACAGGGATGACCTCAGAACCTTTGGGGAGGAAGAGATCTTGCTGATCTTTGACCATCTGGAGACGATTCCCTCGCCAGTGCGTGAGCTTAGCCAGGACCGAATTGATGTACGAGGAAGCCTGGTAGGAGAATGGAGGGATCTCAAGACTGACTATTACAGCATGAATGGCTTTAAGGAAGTGATGAGTCATATCTGCAGATATAAACAGCGCTTTCCATTGCTCAACCAAATCCTGCAGCTGGTCAGGGTCCTGCCAACGTCAGCTGCCTGTAGTGACAAAGGACGAGGGTCTTTACAAAAAGTCCGGAGGAACAACCGCTCCAGGCTCACTTTGGAGCAAATGAATGACCTGCTCACCCTGGCTGTTAATGGCCCCCCTATTGCCAACTTTGATGGCAAGAGGCCATTGGACAGCTGGTTTGAGGAGAAGTCAGGGAACAGCTACACACTTTCCACGGAAGTGCTGGCCAGAATGTCAAACACCGAACAAAAGCCTGTGTTGCACACAATGGATGTGAATTCAGAATTTTATCCTGATATTTGATTGATCAGAGCCTGCTCTTCAGCCAATAATATTCCAAAAGAAAAGCCATCTCAGTGGGCGAGAGCTGATCAGGGGCTATTATGTGATTGGCCAATATGACATTGGCCCTGCTGCTACAATGTCCTAGTTAGCTATACTTAATTCAACCTACAAGAATAGTAGGAAAGCCTTTGCAGAGCAATGGCACTTGCACACCTATGATTATTCTGGAATGTCTTGTTATTTCATGTGATGCtccaaagaaaaagaaagcacttgtttgatgtttttttttctacctttTCTGGAGCTCTCACCATTTTCAGTTGTAAACTTTAGAGCGCCTGGTTACAATATTTTGCGTGAATATGCACAGTTAAGCCTGTTCTGTTTATCTTAAAAAGAGAAACCACAAATGTTTTGACAtttctttttcaattttagCCTTTCGAAATAAtgaatatgagtttctttaaatcACTCTGTAATACATGATAAGTATAAACACATTTGCAAGGCTCTTGATTGTTGTAGCATGTTTTAAATGctataaatcattaatttacatAGAAAGAGATTCATTATTTTGccatattatttactttttcgaCACTTTTTAAAAGCAGAATTGAAATACTTTACTCTTTAAATTAAGTGTAAaacttcagtaattcagtgatgTGGTGTTTATTTATGTCTCTTTTTTGCTTGAGCAAAATCCTTTTGATGACTTATGGATGTGCCATAATGCATTATGCAATCATATGCCTGCACGATGCAGTTTAAGTCAAATCTTGAAAATGGTTGAAAATGCAATATGCAAAATGCAAATGCCTTATTCTCATCAGTTTTAAATCTGTTGTTCGGATGTTCTCTTTCTTTACCTGCAGTGTCAGTGTACTAGTAGTAATAAATTGCCATTGGGAGATTCCAAACAAAACATTCTCCAACAGACTTTTAATACAGCAAGAACAAACATTTTGAAGACGTGATTTTACGCTTGAATACCATTACGCTTTTAACTCAATATAACATGGAGTTTGTGGTACTGTATCATTTTACAGTGTACCTTTTCAGCTTTCCACTAAATGCCATTTATACTATGTGCAATgtgttattatacatttatgaaCTGTGTTGTTACATTATTTACGCTAAGGAGTTAGAATACTTTTATACTCCAGTGAGGAATACTGTGGATTTGATGTTATTTAGatagttaaaaataatatttacaggGATTCTATCTTTTTGTTTATGGAGCCCATGTAATATACACTACCTagacaaaagtactgggacaccaACAGTATAAACCATCAGGAGCTTTAATTAAATCGTATTCTAAATCCATAAGCATTAGTTGGTTCTGGTttgtaatattgatttctaGTTTATTCCAAAGGTGTTTGATGTGTTTGAGGTCAGGGCTGTGTGGGCAAGTAAATTCTTCAACACAGAACCAATCATATCTTTATTGAGCTTTCCGCTAAATAGGAAGAATACAGTTGCCCAACATGTCCTAATATGCTGAAACATTAAGGGTTTAAGGccaaccccccaaaaaacaccCTATAGCCTCATCCCTCCTCCGCCAAGCTTTAAAGTTGCCACAGTGCAGTCAGGCAACATTCTCCTGGCATCCACCAAATCCAGTCTCCTCCATCAGACTGTTCACAGAacttcagtataaatacagtctAGGAAGGATGAAGCTTCTCTGGCTGATTGTTGCAGGGGCTGCTTCTGTTACAGTACCACACTGGAATTCTGTAAAGCTTTTTAGAAAAACCcactctttcactaatgtttgtaaagGCAGACTGCATGACCAGGTGCTTGATTTTTCTAAAAAGTGGTGTGTCCTTATATTTTTGTCCTTGTAGTGTATTTACCTGCTTTATGTGGCCCAAATGAAatgagcagattttttttttgttgttgttgtgatgCTGCTAAAGAAGTCTTAACCCTGATTGCCAAAGTTTCTCCTGAAACAGCAATTAATATGAGTAGAAATAAAGGGTGGTAGAACCTttgtatcaatatttttatcacaattactttaaaaaagcgtCCTGTGATATCTTTAACCTTAAACGGCACTTAAACAGAAAATAGCCCTATGCAGTACGTGTGGTTGAAATTCTATTAATTGTACACAAATTTGTCTTAACTTTGTGTAAAAAATTTGATGCAGTAATTTAGCatgttttctgcaaaaaaatgaatatgtatgtgtatagttCTGACAAATAGTTGAGGCTTTTATATTTGCAAAGAATAATGTTTTATGCTGTAACTCTTGTAAGAATTTGTATAAATGATTGAGACAGCCTGTCTTTACTTTATAATGTTGTTGGTTTTTCAAAACTGTGTAATCTCTTGCATGCGCTCGCTCATGGCTGCAGACAAGTCTTTTGCTTTTTGTTCGTCCCCTTCCTGATTTGAGTGGGAACAAAACAGACgacttaaaaaaagctttaatgcAAGATCTTGCACCGTCCAGATTTTATTAGAAAGTACTTCCTTTGACCAATCTAAATCGTTATACTTCCATATGATGCATTAGCTGCATACTGCATATTGTCTGCTGTGGTGATTTTTGTAGCAATTCATTTTTCTGAATTTGAGCACTTTTAACAATTAACCATATATCCAAACCTCTTGCTTTTGGATgaaattttttttccatatataaAGCTTAAttgtgctttatttagacttatATTTCATCATTCATTAAggagtttaaaaatacttataatagtaaaacaaattaatcttTTCCCCCAAAAAGGAGAAATAATCAATATGTGGTTATTCATTGGAAGGGCTCAACAGCATTCCTTGTTTTGAGTTCTAGGTTTTGATTAGTGGAACGGTTCTGTTCTCTCAGTAGCACTACACTGTGCTGATTGAATTCCAgcctttttctgttttgtggTGTGTTGCTGATTGTTGGACAGACTGTTGCCTCATACTGAGGTCTGTCCTTTCATAcgcttttttcatttttaaacatacagtGCTTAAGCTGTGTTTTTTAACCACATGTAATAGTGGACTTTCATCTTTATTGTTGATAAATGGttattgggatttttttttaattgtttgttttggcACAAATATACTACATTGTATTTACACCTGCAGACTGTCATGCTGTTACACATGTGCTCTTgcaatctgtctctctctccttctctcaatTCTCATTTCACTCTCGAATATACATGCTTTCTCTGTcaatctgtctttctctctttatcttacAATCTCTATAAATTTGTTATAAAAACACTCGCTGTCTGTCAATCTGTCTTTCCTGCAGCCGAGGTGGACTGCATTTCTTCGGCTGTATGTATGAAAGGCTGTTCCAAACTGAAGGatactttatatacagtcaaGAAATGCAGCTGACGAGAGCAGTTAGGAAGATGCAACTGATGCATTTATGTCCCTCGGTTACCCATAATTCTCTGTGCATTTACAACAAAAAGAGGAATAGGAAAATAGCATTTTATGACATTAACACAAAGCTTCATTAGATTGTCCCATTTGTCTTCATAGGATAGTCCTGTCCTACCAAGGACCCTTACTACCTTGAGCAGCCAAGACATTTTGACAATAGCTGCCTGTCTTtgtctctgtcactctctcaccTTCTCTGTAAATGTCTTTCCCTCACACACGCCTTTTCCATtagtctgtctttttttctctgtctcccaCAGACACTTCTCTCCagtgtttctttctctcacataatgtctgtttgtctatctgtctgtctgtctgtctctccctcgCAATTCCTGTAACATGAGCCAAAATCAATCCTAAGGTCATCACTGCTAtagcttttttctgtttttttttatgatattgtgTACCAAAATGCAAATTCCAGATCAAAACTCATACTTTtgtataattttacatttttgtaaatgtatcCACAATAATCAAAGCTGTATTTTGTATTCATGCCACATTATATGCTGTTGATATTTTGCTGGTCTAATTTTGGGGGAGCACCACTTTAGGCTCCATAGGAACAAACGTTTCTGATTTGAACTTTGTATTCAAGTGAATCAGTGTGAATGATATACATGATGTATTTTGTTATATTACTTTATGTGAGTGTGTCGTGTCAGCAACATTTACACAGCTCTATACACACCGCACACTTAGCGTCTGCATGAATACATTGTAACACTGGAAAATACATAGCTATAAACAATGTGTGAATTTAAGGATTATATAGCTGGAGATGGTGGTTATGTACTGCATAAATCCACTCAAAAATGTAAGctcaattatataaatatatatattccacatatattggttttaaataaagcttttgtatttta

Function

GO: NA

KEGG:

id description
K24644 PRDM11; PR domain zinc finger protein 11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102382 lncRNA upstream 38055 23977065 ~ 23977422 (+) True G75988
TU102336 lncRNA upstream 232484 23782032 ~ 23782993 (+) True G75957
TU102253 lncRNA upstream 722335 23292836 ~ 23293142 (+) True G75889
TU102246 lncRNA upstream 740464 23274570 ~ 23275013 (+) True G75882
TU102245 lncRNA upstream 749158 23265930 ~ 23266319 (+) True G75881
TU102478 lncRNA downstream 2457 24032100 ~ 24037861 (+) False LOC103038709
TU102480 lncRNA downstream 10731 24040374 ~ 24041616 (+) True G76060
TU102532 lncRNA downstream 35909 24065552 ~ 24067389 (+) False LOC103035272
TU102676 lncRNA downstream 249851 24279494 ~ 24280790 (+) True G76197
TU102682 lncRNA downstream 259749 24289392 ~ 24291726 (+) True G76202
XM_022672380.1 mRNA upstream 1131 23979831 ~ 24014346 (+) False LOC103036608
XM_007235158.3 mRNA downstream 2449 24032092 ~ 24034253 (+) False LOC103038709
XM_007235160.3 mRNA downstream 2451 24032094 ~ 24034253 (+) False LOC103038709
XM_007235148.3 mRNA downstream 14503 24044146 ~ 24047074 (+) True bet1l
XM_007235143.3 mRNA downstream 18897 24048540 ~ 24050532 (+) True LOC103034513
XM_022672407.1 mRNA downstream 19057 24048700 ~ 24050532 (+) False LOC103034513
TU102363 other upstream 97874 23915791 ~ 23917603 (+) True G75974
TU102309 other upstream 527607 23487530 ~ 23487870 (+) True G75938
TU102047 other upstream 1242916 22755152 ~ 22772561 (+) False LOC103028957
XR_002650259.1 other upstream 2750701 21250467 ~ 21264776 (+) True mov10l1
TU101641 other upstream 2918571 21088622 ~ 21096906 (+) True G75391
TU102479 other downstream 2457 24032100 ~ 24037861 (+) True LOC103038709
TU102670 other downstream 228866 24258509 ~ 24260506 (+) True G76192
TU102912 other downstream 843757 24873400 ~ 24880941 (+) True LOC111193110
TU102913 other downstream 843757 24873400 ~ 24879892 (+) False LOC111193110
TU102930 other downstream 917145 24946788 ~ 24948149 (+) True G76358

Expression Profile