RNA id: XM_015601849.2


Basic Information

Item Value
RNA id XM_015601849.2
length 3345
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC103040160
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 23880185 ~ 23886241 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGCGCTGCCTGGTGACAAGAGTCAACCACAAGACTCTGATAGTCATCTGTGCAGTCTTTGCTTTGATCACCGTGCTGCTGTGGAACAAGTGTTCCAGCGATGTGACTTTTCACACCCCAACCAAGCCCCAACCTGAGCCTGCACCCACcccagaggaggaagaggaaaatGGGCAGCCCCCTGAGGCACCACCAGTGGCTAAGGAGGTCCCGTATGAGCAGATTGACTGCCTCATCAACGAAGATGTCACCATCAAAGGGCGCAGAGAGGGTGACGAGGTGTACCTGCCCTTCAGCTGGGTGGAGAAGTACTTTGACGTGTATGGACGCCTGGTGCAGTATGAGGGTATGGAGCGCTTTGAGTTCTCACATAGCTACTCACGGGTGTACGCCCAGAGAGAGCCCTATCATCCAGATGGGGTCTTTATGTCATTTGAAGGGTACAACGTGGAGGTAAGAGAGCGGGTGAAGTGCATCAGTGGAGTAGAAGGTGTGCCCATATCCACCCAGTGGGGCCCACAGGGCTACTTCTACCCTATCCAGATAGCCCAGTATGGACTTAGTCATTACAGTAAGAACCTTACAGAAAAGCCTCCTGACATTAGGACGTATGGTATGATGGAAGATAGAGATGGCATCCCCAGTCTCTGGACAGTTCCTAAGGGTTGCTCCCTGGCCAAGGTTCGGGACCCACGCCACTCAGGAATTGTTAACCAGTTCAGTACACCAGACAATTCTGATGGTGTGTCTTTGCCTCTGGACAACTCAAAGGATTTTGTCCTTTCCTTCAATGTGAAGTTCATTTCCAATGGAAGTGTGTCAGTGGTGTTGGAGACAACGGAAAAAGGACCCCCATATGTCATCCACTACATCACTAGCTCCCTTCTTATTTCCTTTAAGGACAGGCACATCACCTACGGCATCGGCCCCCGAACAGGCTGGAGTACACTCAGTCGAGACCTGGTTACTGACCTGCGTAAGGGGGTCGGTTTGTCTAACACAAAAGTAGTGAAGGCGACTCGGATCATGCCTCGGCGCGTAGTCCAGCTTGAACTGCGCGGCTCAGGCTTCATCAGCAACATCAGCATTTCGTCCACGGCTCACATGGCTGCCTTCTTTGCTGCGAGCGACTGGCTTCTGCGCAATCAGGACGAGCGTGGCGGGTGGCCCATCAGAGTGGCGCGGAAGCTGGGGGAGGGCTTTAGGACCCTGGAGCCTGGCTGGTACTCAGCAATGGCCCAGGGCCAAGCCATGTCCACACTGGTGAGAGCTTACCTGATCACACACGACCCAGTGTACCTCAGCGCTGCCATGAGGGCCACAGCTCCGTTCAAACGGACATCAGAGCAGCATGGCGTAAAGGCCCTGTTCATGAACAAGTTCGACTGGTATGAAGAGTACCCAACCATGCCCAGTTCCTTCGTGCTCAATGGCTTCATCTACTCTCTGATTGGACTGTACGACGTGGCAGAAATAGCCGGGGACAAATTTGGCAGAGAAGCCGGCATACTGTTCAGCCGCGGATTAGAGTCGCTGAAAGCCATGCTGCCACTGTTTGACACAGGTTCTGGAACTGTGTATGACCTGAGACATTTCACGCTGGGTGTGGCACCAAATCTTGCACGCTGGGACTACCACACCACTCACATAAACCAGCTGCAGCTGCTAGCTTCCATAGACAGTTCTCCCATTTTCAGAGACTATGCCAAACGATGGAAGACTTACCTGAAAGGGGGTCGTGCCAAGCACAACTAGAGTTatcccaaaaacactgatttgtACTACAAATTGTCTAAGCTGTTAATAACTGAAACTGTGTCagctaaaacaataaaacattgttGAAAAGTTGTCTAAAAATGTGACAGTTAGGGATGTCCCGATTTGGTCTGAAAGATTGATCAAGGCTGAAGTTGATCAATAATgtctaaaatacttaataaaatgcTCCACCTTTTTAAAGGACATTTCTGCCACTGTTTGAGAGGTGAGAAATAGACATTATCCTCACATATTTTAAGGTAACAAATAGTCTAAAGCTATGATCAGACTGCCAGCCCAAATCGGATTCTTGGCATATTTAGGTTGTGTTCAGATTAATTTGTCTGTACAGCAAAATAATCTGATTTCTGAAAATTGAATCTAAAACACATTTGAAGGTGGTTTGAAATgtgatttataattttatttgtatttgtatttacttGCATTGTGATAAACAAGACCCACAATAAATCCAGAGTGACGGAAGCCAAAGTTACCGATGGTAAACCATTAGCACATCAATCTATGCAGCTAGGCTTGTGATTTGTCTGGAAATGCAATTCGATCTGATCACTTGCAAATAACAGTGAGGACAGTCATTgagaaaaaatctaatttacctACAGTCTAAACATCTCcaaaactgtgtaaaactggatttttttagatttagtttaGAAGTAACAGTGCTTTTGCTCATATTAGAGCAAGCTCATATACATAGGAAGTGGAACAAGTACACTTAACTTGATAAACAGTATGATAAACAGTTTCTGCCTgcttacacatttatatatgcgTTTGCTAATATGTCACTGATTttacagaaacatttaaaagtaataaGTAGACTGTCATATAGAAATCGGTAAAGAAGATTGGATTTGGTAACTTTGTGTGgctgtataaaaatacaaaacttaaCACATTTATTGTCAAATAGTTCAAATTTAATGGTATTATTTATAGCAAACTACAACTTGATCAGGACATCCCTAGTCACTGCATAGAAATGCCATCCAGTAGCTTAAGCGTAATTTATATACTTTCACATTTTATGAAGTTGATGAGCTTTTATTTCAAGGAGCATTTTAGAAGATTTGGTTCTTACACTTGAATGCTTGTACCAGTAGTGAAAGTGTTTTTATACTTCCAACATAGCAGTTCAGCATCAAAAGCAATTCTgatatttacatgcactttaaGATAAGCACATAAAATTAAGCAGATTATGATATGGTAAAATCAGCAATGATAGAAGCAGATATTAGGACTGAATTTGTGTAGAGCAAAACTCAGCAGTGATGAACAGCATATTGTGCTGCTTCATGGCAAGGAATTGTTGGTTCTATTTAAGGTTTTGTGGGATGTGCAATAGTTTTAAGTGCTATGTTGTACATTGtgtgttgtatttattttgttgtggtAACTAGctgtaaattaaattttcttcAGTCATTTAGTCATAAAAACTGAATTTCGAGAGGATTTCTGATTAGTGTGTTGGTGTAGACATTCAGTttgattgttctttttttattataagcagctttaaagttaaaattaaagtatttagaCATA

Function

GO:

id name namespace
GO:0030201 heparan sulfate proteoglycan metabolic process biological_process
GO:0009950 dorsal/ventral axis specification biological_process
GO:0006024 glycosaminoglycan biosynthetic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0047464 heparosan-N-sulfate-glucuronate 5-epimerase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102336 lncRNA upstream 98908 23782032 ~ 23782993 (+) True G75957
TU102253 lncRNA upstream 588759 23292836 ~ 23293142 (+) True G75889
TU102246 lncRNA upstream 606888 23274570 ~ 23275013 (+) True G75882
TU102245 lncRNA upstream 615582 23265930 ~ 23266319 (+) True G75881
TU102235 lncRNA upstream 667152 23214403 ~ 23214749 (+) True G75874
TU102382 lncRNA downstream 90824 23977065 ~ 23977422 (+) True G75988
TU102478 lncRNA downstream 145859 24032100 ~ 24037861 (+) False LOC103038709
TU102480 lncRNA downstream 154133 24040374 ~ 24041616 (+) True G76060
TU102532 lncRNA downstream 179311 24065552 ~ 24067389 (+) False LOC103035272
TU102676 lncRNA downstream 393253 24279494 ~ 24280790 (+) True G76197
XM_022672371.1 mRNA upstream 8111 23858469 ~ 23873790 (+) True nox5
XM_007235166.3 mRNA upstream 25683 23836318 ~ 23856218 (+) True LOC103041200
XM_007235169.3 mRNA upstream 54568 23804562 ~ 23827333 (+) True LOC103041809
XM_007235167.3 mRNA upstream 78970 23786265 ~ 23802931 (+) True dhtkd1
XM_007235175.3 mRNA upstream 145671 23732062 ~ 23736230 (+) True LOC103043661
XM_007235164.3 mRNA downstream 1367 23887608 ~ 23910521 (+) True ambra1
XM_007235165.3 mRNA downstream 1367 23887608 ~ 23910521 (+) False ambra1
XM_022672381.1 mRNA downstream 93570 23979811 ~ 24014346 (+) False LOC103036608
XM_022672380.1 mRNA downstream 93590 23979831 ~ 24014346 (+) False LOC103036608
XM_022672383.1 mRNA downstream 93590 23979831 ~ 24014346 (+) False LOC103036608
TU102309 other upstream 394031 23487530 ~ 23487870 (+) True G75938
TU102047 other upstream 1109340 22755152 ~ 22772561 (+) False LOC103028957
XR_002650259.1 other upstream 2617125 21250467 ~ 21264776 (+) True mov10l1
TU101641 other upstream 2784995 21088622 ~ 21096906 (+) True G75391
TU101630 other upstream 2856773 21023256 ~ 21025128 (+) True G75383
TU102363 other downstream 29550 23915791 ~ 23917603 (+) True G75974
TU102479 other downstream 145859 24032100 ~ 24037861 (+) True LOC103038709
TU102670 other downstream 372268 24258509 ~ 24260506 (+) True G76192
TU102912 other downstream 987159 24873400 ~ 24880941 (+) True LOC111193110
TU102913 other downstream 987159 24873400 ~ 24879892 (+) False LOC111193110

Expression Profile