RNA id: XM_007235169.3


Basic Information

Item Value
RNA id XM_007235169.3
length 4457
RNA type mRNA
GC content 0.43
exon number 11
gene id LOC103041809
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 23804562 ~ 23827333 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GACAGTCTCCTGATTATTGACTGGTCGTGTGCAGCAGCAGAGCTCAGCCTCCCACTCTCTCTCGGTTCAGGCTGAAAATGACTCAGACATATGGGAGAGTTtctgtgtgtgtcactcagggCGGCTTTCACTGTGGAGAGGCGACTCGGCGAGGCGGTGTGTGTATCTGCAGCCCTCGACTGGATTAGTAACATTTCAGGCTGACTGGCTCTGCTGGCCGCGGGGAGGCACCTGTACGGTGGTAGCGGCGGCGGGGAGTGAAGGCGGCGGTAGGAGCCGCTGCAGCAGCGGGAGGAGCTCGACCCCGGAGCCGCTACTGCTCCAGTCCGGCCTCGCCGGAGCGATTTCCCGCGCTGCAGCCGCGCCCGGGTCACGGAACAGcggcgtctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctatctgtctgtggtTCTGCTGAAGGAGTGAGTGTGAGACCTGGAGCCGACATGGCCCGAGGAAACGAGGAGTCCGCCAACGGGTCCTGGAAGAAGCAGGTCGATGATATTAAGAAGATCTTTGAGCTGAAGGAGATCCTGGGGACGGGGGCGTTCTCTGAAGTGGTTCTTGCTCAGGAGAGGTCTACAGGAAAGATGTATGCAGTGAAATGCATCCCCAAGAAAGCtctgagaggaaaagagagcagCATTGAGAATGAAATTGCTGTACTAAGGAAgatCAAGCATGAGAACATAGTTGCCCTGGAGGACATTTATGAAAGCCCCAACCACCTGTACCTCATCATGCAGCTCGTCTCCGGAGGAGAGCTGTTTGATCGGATTGTGGAGAGAGGCTTTTACACAGAGCAGGACGCCAGTGCTTTGATAAAACAAGTTTTGGATGCAGTTAACTACCTCCATTCACTGGGTATAGTGCACAGAGACCTCAAGCCAGAGAATTTGCTATACTACAACCAAGATGAATCCAAAATCATGATTAGCGACTTTGGCCTGTCCAAGATGGAAGGAGCTGCAAATGATATCATGTCCACAGCCTGTGGAACTCCAGGATATGTTGcTCCAGAGGTCCTGGCACAGAAGCCCTACAGTAAAGCAGTTGACTGCTGGTCTATTGGTGTTATTTCTTACATACTACTCTGCGGTTATCCTCCTTTTTATGATGAGAACGACTCCAAGCTTTTTGAGCAGATCCTCAAGGCTGATTATGAGTTTGATTCACCATATTGGGATGATATCTCGGACTCAGCAAAAGATTTCATCAGTAACCTGATGCTGAAGAATCCAGAGAAGAGGTTCACATGTGACCAGGCACTCCTGCATCCCTGGATAGCTGGAGACACTGCTCTTCGTAAGAATATCCACGAGTCAGTGAGTCGGCAGATGAAGAAGAACTTTGCTAAAGCCAAATGGAGACAAGCTTTTAATGCTACAGCAGTGATCCGACACATGAAGCGTCTGCAGCTGGGCAGCAGTTTAGGCAGCAGTATCGACTCCACCCAGCACAGGAACCAGAACCAAACTCCCGCGCCTATAAAGAGCCAGTCTGTGGATGTATCCTCCATCAGCCACAAGGACTATGCATCCCAGAGAGGTTCAGGGGCGAAGGAGAAGAGATGTACACGGCCTTCCACCGTCACCACAATCATCACCGGCTCCAAGTGACCCAGCCATCTCTGAAGACAACAGCACCTTCAGACTTATGAAACACTCTCTCCATTATCCATTGGTCACTTCCTCCAGATCAGTCTTTGATCTGGCAGCTGCCAGTCTGCAGCACTGGGTTCACTCCTTGCTGTGCCAGACGGTGGCATGCCCTAATTGAGGAGCTCAGACAAAATGGTGGGATCAGAGTCTACTGCTGATCAAAGCTGCTGTTGACCTGCTTGGTACGTGTTTTGTATTGTGGAGCTGAGGTTGACTAATGCACTACGGAGGTGAAGGACTATTTAAGGCTGCTTTTAGTCGGAAAATATGAAGAAATGTCATTAAGGTAGATTTATTTAATATGGTCTGTTCACTTCAGCTGGTTTATATGAGTTGACCAaccagctggagcagcattttCTGCTAAAAACCAAACGAGATATTAGATGATGGCATGCAGCACAGGTTAGGTTTAAATTAGGTTTTCTCCTTAACTGGGCCTGCATTTTAAGGTAACATCCAATCCAGATATAGTTTTTTGACTGGTCACATGACCAGCTGTGAGTGAGTAAAGAATAAAGCtgaaactaaaatgtttttattgcttttctATTGCTTTAAGATCCATTCTATGTTTACAAGAGAGCagtaatttgtttatttgaaagTGAAACAAGTCAAACTGTAATATTAGAGCATAATTTGTATCCAAACAACCACATAACTCCTGCCCAGTTACCCAAAGCATTGTACTGTAAAGACCCCAGAGTGTGTAAATGGATTGATTGGCACGTACAGTGTTGTTTGTGGTATTGATTTTGGTAAACACACCACAaaagtttcattttatttctgaactgTGCATAAATCAGTCAGTAAAATAGAATGTGTACTGTAACTCTAGTGCTGATACGTACGGTTTTCTTTTTCCACTCTCTGTGGGTACTGGTGAAGTGTGATTTGTTTGATGATGTAAAATGTTTTGGTATGAAGTGTTATCTGGAGTGTGTATTGTTGAAGGTGAatggacatatatatatatttacatatatatttttcatgtaCACTTGATTATATTTGGTTTGCTATAGAATAGTCACCGCTGTTTTTTCATGTAAGTAAAATGTAGGCTATACCTGCTCTCAGGAGTATGTTTGAAGGTAGTTGCCAGTGATTAATTACAAACAGATTAGGGATGCAATGAATTTTGGGCAACCAGAATTATTTggctgaaaatggcaaaaaagcactttcagtATTTAGATAAATAAGTAGAAAAAGAATTATACCAGACCATCAATTTAATCACCAGGTTTGACCCCAGTTTCCTCCCGTAATTCACTCTTACTTATCCTTCTTTTTTAGTAATCATTTTTGATGCTAAGGCTCTCCCTGGAACCTTTACTCAGCAGATCATCAAAGTCACACTgagatattataaaataaattttaaaagtgTACTCCAGTCAGTTGGGAATGCGCACTACCTAAACTTTTCAAATTTTCTATTCGACTGACACCACCAATTTGAACTCTTACCGGCCAAGGCCCTGCACTGTACTGGGTAAGTACATGCCAATATTATGATTTTCTgagtagaatatacagatatcatatacatatcatatcaaacagcaACCCTAGCAAACCAGCATTGTATGATTAACCCACTGTACGATCAACCTGTACAATTCTGTCTTCTTTGCAGCcatgttaaatggttaaagaTGACCTCTTTAACCTCAACCTGTACACGATTAACTATcagcgagtaatccagctcgAAAACAGTTAGCATCTCAGCTAACTGGCCTTGTTTGGTAAATAGGAGTTCCCCACTGGGAAGTTGCCCAGGAAATCCATTCCTCCTTCATGATTTGTAGTGGGAAAAACAACATCAGTTGGCTGAGATGATAACTGATTTTGAGCTGGGTTACTCGCTGATGGGTTGGTCGTACAGGTTGATACCAAAGTTCCTGAGTTGAGGTCATCTTTAACAATTTTAACATAGCTGTAAAGAAGACAGAATCAGGAAGGTATGTAATCGTATATTTTTAATGGTGCATCTGctgttcatttttgtttgtgcaccttcttttattctgtaatcTATGCTCATTTAacttgaaatgaataaaaataaataaaaacctgtgTTCACTATTCAGCCTTTAGCTATGTCTCATTATTGTTCAGTTTCGTCCAAAAATGATCATTTCGTTGCATCCCTGATACGTGTTTGtattatgttcagatatttttatgtaAGAGGAAATGATTGCAAACACTGAAAACCTGATACAACCACAAGCATCCAAATATCAGTGTTCTATGGGGTTGTTGCTGATTGCATTTagttaagaacaaaaaaagaaacacgtATTTGATCAAATATATTCCTCTGTTTAAAACAATCTTGTTTCTACTGGATTGCTGTATGGACTGAAATATGACTTTGgggaaaaatggaaaacagaTGGCTCGTGGTTTGCTCAGTATTTTCTCACAGTCTTCATAGAAACGCTCTGAATTTAGCAGCTAGGTGCTGCTTCTTTCAGTCACATCACAaagcagagagagggagtgaggttctgttcaggCCAGTCCAGAGTTTGTCTTTAGCTGATTTCATCCCGATATtaaatttcacatttaatgGACATCACTTTAAGTAAAAATGGACAGCTTTAAGATCAGatattgacttttatttgtttggttTAGAATTTTTACATTACAGAATGCATTCTGTTGAATCCATTACAAGTCAACAAATCTGCATATTAAACTACATGTATTACCTGTA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0009790 embryo development biological_process
GO:0005829 cytosol cellular_component
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08794 CAMK1; calcium/calmodulin-dependent protein kinase I

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102336 lncRNA upstream 21569 23782032 ~ 23782993 (+) True G75957
TU102253 lncRNA upstream 511420 23292836 ~ 23293142 (+) True G75889
TU102246 lncRNA upstream 529549 23274570 ~ 23275013 (+) True G75882
TU102245 lncRNA upstream 538243 23265930 ~ 23266319 (+) True G75881
TU102235 lncRNA upstream 589813 23214403 ~ 23214749 (+) True G75874
TU102382 lncRNA downstream 149732 23977065 ~ 23977422 (+) True G75988
TU102478 lncRNA downstream 204767 24032100 ~ 24037861 (+) False LOC103038709
TU102480 lncRNA downstream 213041 24040374 ~ 24041616 (+) True G76060
TU102532 lncRNA downstream 238219 24065552 ~ 24067389 (+) False LOC103035272
TU102676 lncRNA downstream 452161 24279494 ~ 24280790 (+) True G76197
XM_007235167.3 mRNA upstream 1631 23786265 ~ 23802931 (+) True dhtkd1
XM_007235173.3 mRNA upstream 61771 23712530 ~ 23742791 (+) False sergef
XM_022672370.1 mRNA upstream 61771 23712560 ~ 23742791 (+) True sergef
XM_007235175.3 mRNA upstream 68332 23732062 ~ 23736230 (+) True LOC103043661
XM_007235174.3 mRNA upstream 79520 23712530 ~ 23725042 (+) False sergef
XM_007235166.3 mRNA downstream 8985 23836318 ~ 23856218 (+) True LOC103041200
XM_022672371.1 mRNA downstream 31136 23858469 ~ 23873790 (+) True nox5
XM_022672373.1 mRNA downstream 52852 23880185 ~ 23884651 (+) False LOC103040160
XM_007235163.3 mRNA downstream 52854 23880187 ~ 23884651 (+) False LOC103040160
XM_022672374.1 mRNA downstream 52856 23880189 ~ 23886241 (+) True LOC103040160
TU102309 other upstream 316692 23487530 ~ 23487870 (+) True G75938
TU102047 other upstream 1032001 22755152 ~ 22772561 (+) False LOC103028957
XR_002650259.1 other upstream 2539786 21250467 ~ 21264776 (+) True mov10l1
TU101641 other upstream 2707656 21088622 ~ 21096906 (+) True G75391
TU101630 other upstream 2779434 21023256 ~ 21025128 (+) True G75383
TU102363 other downstream 88458 23915791 ~ 23917603 (+) True G75974
TU102479 other downstream 204767 24032100 ~ 24037861 (+) True LOC103038709
TU102670 other downstream 431176 24258509 ~ 24260506 (+) True G76192
TU102912 other downstream 1046067 24873400 ~ 24880941 (+) True LOC111193110
TU102913 other downstream 1046067 24873400 ~ 24879892 (+) False LOC111193110

Expression Profile