RNA id: XM_007235172.2


Basic Information

Item Value
RNA id XM_007235172.2
length 2575
RNA type mRNA
GC content 0.51
exon number 4
gene id kcnc1
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 23747948 ~ 23772669 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGTCGGGAGGGTCGAACCCGCCATGGGCCAGGGTGACGACGAGGAGCGCGTCGTGCTGAACGTCGGCGGCGTGAGGCACGAGACGTACCGCGGCACGCTACGCACGCTGCCCGGTACGCGGCTCGCGCGCCTCGCCGAGCAGGCGGAGGGCGCGGGCCACGACTTCTTCTTCGACCGGCACCCGGGGGTCTTCGCGCACATTCTCAACTACTACCGCACCGGCAAGCTGCACTGCCCGGCGGATGTGTGCGGGCCGCTCTACGAGGAGGAGCTCTCCTTCTGGGGCATCGACGAGACGGACGTGGAGCCTTGCTGCTGGATGACGTACCGTCAGCACCGCGAGGCCGAGGAGGCGCTCGTGAGCTTCGGCGGCGCGGCGCCTCTGGACAACGGGCACAGGCACGagctggaggtggaggtggcCGCTGATGGCACGCACGAGGCAGCCGACGGCGACGAGGGTGCCGAAATGACGCGCAGGCTCGCGCACGGGGACGCGGCGGACGCCAGCGGTGGCCGCTGGAAACGCTGGCAGAAGAAGATGTGGGCGCTCTTCGAGGACCCCTACTCGTCTCGATACGCGCGGTGGGTGGCATTCGCATCTCTGTTTTTCATCTTGGTGTCCATCACAACTTTCTGTCTGGAGACCCATGAGGCCTTTAACCCCATCATCAACCGGACAGAGTATGATGTGGTAGACAATGAAATTGTGGAACGAAATGTCCCCCAGACTGAGACCATGGTGCAGCTTACGTACATTGAGGGGGTCTGTGTTGTGTGGTTTACCTTTGAGTTCTTAATACGAATCACGTTCTGTCCCGACAAACTCAAGTTTGTAAGAAACGCCCTCAACATTATTGACTTTGTAGCCATTCTACCTTTCTACCTGGAAGTGGGACTAAGTGGCCTGTCCTCCAAAGCTGCGAAAGATGTGCTAGGGTTCCTGCGTGTGGTGCGCTTTGTCCGTATCCTCCGTATCTTCAAGCTGACTCGTCACTTTGTGGGTCTTCGCGTCCTGGGGCACACGCTCCGAGCCAGCACCAACGAATTCATCCTGCTCATTATCTTCCTCGCCCTCGGAGTCCTCATCTTTGCCACCATGATTTATTATGCTGAAAGGATTGGAGCCAATCCCAATGACCCCCGTGCTAGTGAACATACCTATTTCAAGAACATTCCTATCGGCTTCTGGTGGGCTGTGGTTACAATGACGACACTTGGCTACGGAGATATGTATCCTAAGACAACATCAGGCATGTTGGTGGGCGCACTTTGTGCTCTGGCTGGTGTGCTGACCATCGCCATGCCAGTGCCTGTCATTGTCAACAATTTTGGCATGTATTATTCTCTGGCAATGGCAAAACAAAAACTaccaaagaaaaagaacaagcaTATCCCCCGGATTCCCCCACTGGGCTCACCAAACTACTGTAAGTCAGTCATTAACTCTCCAAGACCCAGTACACACAGCGATACCTGCCCTCTGGCCCAGGAAGAAGTCTCTGAGATTAGATACCAAGattttaaagtaaatggAGAGCCATCTAAAGCAGCCCTGGCCAATGAGGACTGCCCGCACATTGACCAGGCAGTGTCACCTGAGGAAGTTTTTAGCCCTGTAGACCGTGAGAGACCTTGCTTTCTGCTCACCTCCGGAGAACGGGGCAATCACATAGGGGGAAGAGTCAGGAAGGAAGCCCAGCGAGTGAGCCGAAGCAGACAACCAAcagagtcagtgtgtgttatgAACCATGGTGTGCCAACCACTATGTGTGTCAACCATAAAGCCACATCTCCCACCTGATAGTGCtgtagggtgtgtgtatgtatgtgtgtgtgtgtgtaggtgcgtGAGTAAATGTTTTTCTCacatgtaagtgtgtgtgtgtgttagcgtgtgtaagtgtgtttaagtgtgtgtgtacagtagatcAGCATTATTTCTAAGTGACAGAGACAAACTCAGCGTAGATGTAGCACAGAGAAGCTGTTGTTGTTCAGCCATGTGTATCTCTGTTCCGTGAGTGGTAATTGTGCTGTTGTACTGTGTAAAGTGCCTATTGTTTTTGgggtgtgtgtacgtgtgtatgTGTCCGTGTTGTATACAGTGCTTTTGTGTGCTGGTGCATCAAATACGTGACTTcagtttttttactttcttctttctttccctccttaAGTGATCAGATGCTCTGTTTTTTGCTGTGCCTCCGTTTTAATGTTGTAAGATGTTGCTCCAGTTTGTATCACCGTGATTGACTAGTACACATTCTCTCCAGTCATGACCAAGTAGGGAGAAGCTCATTATGCAGAGAAACACCTTTTCCCTgtgatattttctattttctttaccTATAGTAGCAACTGCTTagtaaatgccttttgcacactTTGCACCTCTTCACTTTTACATTGCTTTCAGTAGAGCAAGGAATCACCAGCCCTCCTCCTGGAGATCTTCTGTCCCACAGGTTTCATCTCCAACGCAAAGATTCAtttaaaagtttgggcacacctgaTCGTTTTCactattttcctttataaatcattggttgtttggatcagctaatatatc

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0051260 protein homooligomerization biological_process
GO:0008076 voltage-gated potassium channel complex cellular_component
GO:0005251 delayed rectifier potassium channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102384 lncRNA downstream 60558 23679205 ~ 23687390 (-) True G75989
TU102310 lncRNA downstream 260090 23487531 ~ 23487858 (-) True G75939
TU102308 lncRNA downstream 260988 23486621 ~ 23486960 (-) True G75937
TU102297 lncRNA downstream 322603 23418711 ~ 23425345 (-) True G75928
TU102264 lncRNA downstream 422824 23324610 ~ 23325124 (-) False LOC103033738
TU102416 lncRNA upstream 28876 23801545 ~ 23860428 (-) True G76015
TU102417 lncRNA upstream 54576 23827245 ~ 23833034 (-) False LOC103042310
TU102422 lncRNA upstream 64942 23837611 ~ 23839200 (-) True G76020
TU102425 lncRNA upstream 70386 23843055 ~ 23844408 (-) True G76023
TU102439 lncRNA upstream 109145 23881814 ~ 23886172 (-) True G76035
XM_007231194.3 mRNA downstream 329803 23370623 ~ 23418145 (-) True spg11
XM_007231195.3 mRNA downstream 381732 23324577 ~ 23366216 (-) True LOC103033738
XM_022672365.1 mRNA downstream 601418 23025246 ~ 23146530 (-) False LOC103035716
XM_022672366.1 mRNA downstream 601419 23025246 ~ 23146529 (-) True LOC103035716
XM_022672367.1 mRNA downstream 668152 23025246 ~ 23079796 (-) False LOC103035716
XM_007235170.3 mRNA upstream 54545 23827214 ~ 23833068 (-) True LOC103042310
XM_007235162.3 mRNA upstream 143122 23915791 ~ 23922222 (-) True LOC103039841
XM_022672376.1 mRNA upstream 152599 23925268 ~ 23974335 (-) False LOC103036104
XM_022672375.1 mRNA upstream 152599 23925268 ~ 23974285 (-) False LOC103036104
XM_007235150.3 mRNA upstream 152599 23925268 ~ 23965069 (-) False LOC103036104
XR_002650263.1 other downstream 1234224 22456331 ~ 22513724 (-) False LOC103024007
TU101746 other downstream 2474931 21270129 ~ 21273017 (-) True LOC111193105
trnat-agu_2 other downstream 2851772 20896103 ~ 20896176 (-) True trnat-agu_2
TU101364 other downstream 3647698 20087418 ~ 20100250 (-) False hsd17b12
TU101358 other downstream 3715921 20027162 ~ 20032027 (-) True G75207
XR_002650267.1 other upstream 411900 24184569 ~ 24188202 (-) True LOC111193112
TU102973 other upstream 1141629 24914298 ~ 24920365 (-) True G76377
XR_002650272.1 other upstream 1176375 24949044 ~ 24950022 (-) True LOC107197705
TU103036 other upstream 1411540 25184209 ~ 25184469 (-) True G76424
XR_002650273.1 other upstream 1516181 25288850 ~ 25301768 (-) False rab3il1

Expression Profile