RNA id: XM_007235179.3



Basic Information


Item Value
RNA id XM_007235179.3
length 1939
RNA type mRNA
GC content 0.48
exon number 13
gene id saal1
representative True

Chromosome Information


Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 23679217 ~ 23687396 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


GGTGGTGTGCGGTGAGCTGTGTAAACACTGAGCTGtagagcagaagaagaagaagaagaaggcgtTAGAAACAGAATCGGAGCCGGTTTAAACCCACAAATCCCGCTGGTTCTGTAGTTTGGTTGTAGTTCTTCAGTCTTCATGGATCATAAAGATAACTGCACTGAGGAAGGAGACGATGATCAGTCCAGTTCGTCATCATGCCCAGACTCACCGGAGATGGACCGTAACCCATCACCACCTCCTGAGGGAGATGAAGAAATAGTGGAAGAGGCTGATGCCATTGGAGAAACAGTGTACAGCAAACACTGGCTCTTTAGCACTTTAACCCAACTTATTCAGATGGTGACAGATCAGGAGTCCAAAGAGGGAGAGCAGGAACTGTCTGAGGAGCATGAGGATGAGCTGTGTAAAGTGTGGGACATGGCCATGAATAAGgaTGTGGCTGGTTTTCTTCAAGAGTTTAAGGCTCCAGACATCTTACTGGGTGTGATTGCAAAGTCTCGTAATCCACGCCTGACTGAAATCTgtgtgggaattctgggaaatATGGCTTGTTTCCATGATACCTGTGTCTCTTTGAGCCAGAATGTTGACCTAGGTGATGTGCTTCTGTTACTGCTGGGTGACAGTGATCCTCCCACACTGTTGGAGACCTGCAGGCTTCTGGTGACTTGTTTGTCTCAACCCGATGTTGCCCCCTTGTGGCTGCAGAGAATACAGCAGCAGGCTGCCACATGCAACAACCTCTGTTTTATAATGTGCAGTTCTACTAATGTGGAATTGTTGATGAAGGTGGGGGAACTGGTTGATAAGCTATTTGACGAGGACGAGGACCTGATGAAAAGCTGGCTGTCTGGACTGCCGGGGGAGAGTGACCCGGACAAGGACACACACCAGGACATCTCGTCTTCTCTGCTGGAGGCCGCAGTGCAGCTTAGgaaGGAGAGTCCAGAAGCCCTTGAGGTGTATCTGCATGCTCTTCAACTCCTAACTACAGTAGATGAAGGAGTGCAGAATCTTGTGTCAGAAGGAGGGTGTGGAGAGGCACTGTGGACATTTGTGTGTGAAGTTGTGTGTGAAGACTTGTGCCAGCCAGGGGACCCCTCTATTGTCCTGCAGGAGCAGAAGGCTCTCCTGGCTCCTGCACTTGCTCTGCTTTCTACTTTATACAGTAGCCTTCAGAGAGACATCAGTCTGTCACTGGTGGGCAGTCTTTTCCGAATCTTGTACTTCCATACTGAAAATCAGCAAGCTGGGCATAAACGAAAGCAGGAGTCAggggatggacagacagatgaaGTGCGAGATCAGGAAGACACAGATGTACAGCTCCAGGCCCTGGTCGAGATAGCAGCGGAGCTACTTTGCACTGTTCTCCCCGATTTACCCAAGGACACTGTGTCACAGCTGGTGAGACAAGATGACTTCAGTGAGAAGATCTGTGTGTCTGCTTTAAAGACACTCCTGCCCCAGAACATCACATCTGTGCAGTTCTTGGTTTCCATGTTATCTGAGGTAGAGCCCAACCTGGCAGACATTCTCAGGAGGGAGTGTTCCATTCCATCAGAACCAGAATAGACCACGGACACCAGATATAGAATGAACTTGAATCCCTCTAATATAAGGCTCCTCCTGAAATGAAACAACTGTTTATCACACACAGGTACATGTTAGTGTGCGTATCTAAGTTATGTATCAATGAACTTTCACTACAGAGTAGAGATCTgggctctgctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagactgtgtaGAGGTCTGCATCCACCTCCCACACCCCACCCCCAAACAGACACCGGAGGTATTATGTTAATActgatgtatattttttatgtggatATGTGTATGTTCATGATTGTTTTgataaaggctttttaataaaCTCAGACTTTGATACA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU102253 lncRNA upstream 386075 23292836 ~ 23293142 (+) True G75889
TU102246 lncRNA upstream 404204 23274570 ~ 23275013 (+) True G75882
TU102245 lncRNA upstream 412898 23265930 ~ 23266319 (+) True G75881
TU102235 lncRNA upstream 464468 23214403 ~ 23214749 (+) True G75874
TU102164 lncRNA upstream 597546 23025275 ~ 23081671 (+) True G75807
TU102336 lncRNA downstream 94636 23782032 ~ 23782993 (+) True G75957
TU102382 lncRNA downstream 289669 23977065 ~ 23977422 (+) True G75988
TU102478 lncRNA downstream 344704 24032100 ~ 24037861 (+) False LOC103038709
TU102480 lncRNA downstream 352978 24040374 ~ 24041616 (+) True G76060
TU102532 lncRNA downstream 378156 24065552 ~ 24067389 (+) False LOC103035272
XM_007231193.3 mRNA upstream 253912 23418666 ~ 23425305 (+) True fam96a
XM_007244354.3 mRNA upstream 854801 22821117 ~ 22824416 (+) True rsl24d1
XM_015604558.2 mRNA upstream 863695 22792282 ~ 22815522 (+) True LOC103047784
XM_007244409.3 mRNA upstream 863695 22792282 ~ 22815522 (+) False LOC103047784
XM_007244353.3 mRNA upstream 898258 22754973 ~ 22780959 (+) True LOC103028957
XM_007235176.3 mRNA downstream 16529 23703925 ~ 23710875 (+) True tph1
XM_007235178.3 mRNA downstream 16529 23703925 ~ 23710875 (+) False tph1
XM_007235177.3 mRNA downstream 17744 23705140 ~ 23710875 (+) False tph1
XM_007235173.3 mRNA downstream 25134 23712530 ~ 23742791 (+) False sergef
XM_007235174.3 mRNA downstream 25134 23712530 ~ 23725042 (+) False sergef
TU102309 other upstream 191347 23487530 ~ 23487870 (+) True G75938
TU102047 other upstream 906656 22755152 ~ 22772561 (+) False LOC103028957
XR_002650259.1 other upstream 2414441 21250467 ~ 21264776 (+) True mov10l1
TU101641 other upstream 2582311 21088622 ~ 21096906 (+) True G75391
TU101630 other upstream 2654089 21023256 ~ 21025128 (+) True G75383
TU102363 other downstream 228395 23915791 ~ 23917603 (+) True G75974
TU102479 other downstream 344704 24032100 ~ 24037861 (+) True LOC103038709
TU102670 other downstream 571113 24258509 ~ 24260506 (+) True G76192
TU102912 other downstream 1186004 24873400 ~ 24880941 (+) True LOC111193110
TU102913 other downstream 1186004 24873400 ~ 24879892 (+) False LOC111193110

Expression Profile