RNA id: XM_007235198.3


Basic Information

Item Value
RNA id XM_007235198.3
length 4030
RNA type mRNA
GC content 0.42
exon number 15
gene id LOC103025218
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 24157139 ~ 24180647 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCTCAAAGGTTGGGTCTGAAGCatgctgttttctctctcttatccgCAGCACTGTGAATGTGTTATATGAACAAGAAGCTGATAGAGCAGAGAACCGCTGATGCTCCATATCATATCATTTCATTAGCACTGACCCATCAAACAGAGAACAATGGATCTAAAACATCTCAACTTAACACTCAGAACAGCTTTCTGTCTCCTGGTCGTGTTCTCCATCAACGCTTCTGGGCAACTGTGTACAACTGAAACCAACTCCCCAGTGTTCAAGGAGAACAACACTATTGGGCAAGTTGTTGCTGAAATAACTGTTCAGGATGGGGTGACCATGAATATCATAACTAACCCTGAAGAAGCTTTTGGCCTAAATGGCACTAACCTTGTGGCAGTCAAAGTTCTGGACTATGAGACCCTTGATAACAACATACTGCTAGTTGAAATACAATGCACCAGACCAGGGGAGACTTCGCCTCTTCTACGCATTATTGTTACGGTGGAAGACATCAATGACAATCCTCCAGTGTTCGCACAGAGCCACTACCAGCTGGAAGTACCCGAGcTGTCACCAATTGGCACAAGTGTTGAAAAAATTGAGGCTACTGACCTTGATAAATTCCCACTGAACTACACCCTTCACTCCCCCATGggTGAATTTAGGCTGCAGTCATATTTAAACCCATTAATCCTGGTAAACAAAAATCTGGATTATGACACCACTCCAGAAGTCAGTCTTATGCTGTATGTTGAGGATTCTCCACCACCTGTTCATACCGCCTCAGCTACAATTACAGTGACAATCATTGACATCAATAACCGACCGCCATGGTTCCAGCCTTGTACAGAAACCCTTATTGGCATCTCCAAAATCTGCCTCAATACTGGATACCAAGGGACAGTCAATCTAACAGAGCAAGCGACTGAAGCTTTGACTCTGGAACCTGGTCCAGTTCATGCCATTGATGGAGACAAAGGCAGGAATGATCCAATCAATTACAGACTTCTTTCAGGAAATGAGGATGGTATATTCAGCATTGATCCAAACAGTGGGGACATCACAATGCTGAAGGCAGTGGATGTAGCAGGACCAATTGTACTGACTGTCATGGCCTATGAGCAACTCACTCCGGACATGTTCGCCACCACCACCGTCACACTACAGGTGGTCATCAAGAGCTTGCATCCCCCAAAGTTCGTTAAATCCAGTTATGAGGGCTTTATCTCTGAAGATGCAGATGTGGGCAGTATGGTGCTGGAAAGCAAGAACAGCAACAAACCTTTACAAGTTCTGGCCACAGATGATGACTTTGCTGATGGAAAAAATCCAAGCATTGCTTATGAAGTTGTAGGTAGCAATGATTTCAGAATCACAACAGAAGGCTTCATACTTATAGTACGATCACTTGCTCCAGGTACAGCTGACTTACAGATGCGTGTAGCTGATACAACCAATGGTGAATTCAGCACAGCCTCCTTGTCTGTGGAAGTAACTCCAgGGGTCCCTACAACCACTATGGATATGCCTACCACAGCCAAAGACACGATTACAAGCCCTGAAATCACAGAAATGGTTACAGGTTCTCCCATAACTACAGAAATGGCCACAGTCACTCCTGTTACTACAGAAACGGTTACAGAACTAACAAAGACCTCCTTTGATCCAGTTACAATGACATCATCTTCAGGCAATACTAACAGTCTTCAAACAGATGGATTGCCTGGTCCAGGAGGTGAATTTGGGTCAGAAGACATGGCAGCTCTGGGGGCCACACTGGCTGTCGTGCTGCTCATCTGCTTGGTGATCATTGGCGTTCTGGTCTACCGTGTCAAAAGAAACAGTTCAGACTGGAAGAAGTTGTCTGAGGCCAGCATCTTCCGCAGCACGCTAAACGGTGGTTCAGCTGGGCCTAAAGACGGTGTGCAGTACATCAATGACGGCTTCCAGGGCGATGAGGACAAAGGCAGCTTGAACTCCAAGGAGGCAGCGGAGTTGCCCCTTCCTCAGGGGCCAGGGCTGAAGCGCAGTGTGCCGGAAGAACTGGAGAAACAGAGCAGTGCCCCTGTCCCTCTGGGCCTAAGCAGCAGTGACACCAGCTCACCTCCTGAAGACTCCAGCAGCCTGAGCCCCTCAGACACCACAGACAGTGAGAAGGAGGTGAAGCCCATTCTCACCAAAGAACGACGGATGGAGGATGGCTACAAAGCAGTGTGGTTTAAACAGGACATTGATCCCAGTGTCAAGGAGGAAGTGGTCATCATTCCTGACAGTGGAGAGATGGATGTAGGACAAGAAGACGATgacaatgatgatgatgaggaggaggaggaggaggaaggtgtTACAGGTATGAATAGGTTTGCACGGCGATCAGGCTCAGACTCAGAGGATGAAGAAACCATGACTTCAGACTTGTAACCTATGAACTGGAGGTTAAACTGTCAACCAGCAGTCATCAAACCAATGTTGTATCTTACTTATGACACATCCTTGTTTGTAGAATTTCAGATACTATAGAAAGTCAAATATGTAGGGATGCTGTGGAATGGAATTTTTTGGTCGAAATTGAAACTGAATGTCCGAAGGCCGAATACCAAACACTGTTTTTCCCAAATTTCCataaaatgttacaatttttaatacattttatgacagaaaaaatgattacaaaatgaaaatttaacaATAAGTATTAAACACAGATCATTTTAATATCCATGCAGACAAACCagcaaagcacaatacatttacctcagcagtgctactctactCACATCTCACATCTAGCCATCTTATTAGTATCATTTGACTAATGGTGAATGCACTTAAGCAGTGCAAATTTAATCATAAACTACCCCAGCAATGCTACTTAAGTGAATTAGGAAActtacacagagaaaaaaacagatgttAAAATAAGTTTAGTTAGCTGGGTGCAGCTTGTATTAATCAGCTGGAAAAGCTATGACCGCTGAACAAATCCTAACATAGTGAAAAGGCTgcaatatgacttaaaataaacaagtcattgtttggtataaaatattctctttttcttatttacctattttttctattttttacctATTGCATTCACAACATTCTACATTGTTTTTCATACAACTCTGATCAAGGTTTGTTAAGTACTATGTACAATTGTATAGTTTtagaatataaaattaaattcaaaTGTAAATAGAATAGCTGCCTAGTAATAAAAGACTTTGTGATGGAGTTTGGGATGAGACACAAACACACGTTGGTGAATTATTATAGCCACAGGTCTGTGCCATaaaaagagagacagtaagGGGGTAATAAATGCCTTATGACTTATGAATCTGTACTTGGACCTGACACGGGTGTAACGGCGGTTGCTCTAGCAACCTTTCATTGTGGctctttgtttatattttttatggccTTGTGGGGCATGTGAGCTTTGCTGAGCAGCAAACAAGCACCCTTTGACCTCTTAATTATGAAATCAATGCCTAATAATCATACATGCCCTATCTCAGAGAATATGAGCTTTGACCGTTGACTTGTAATAAAGCACCTGCATTAAGATTCATAGCTTTTCATAGCAGGAAGCAATTCAGCACTATGAGTAGGTTTCCATATTTCATAATAAGATGTTGCATCCAGTAATTTaagaagccattttaaattGTCCATATGGATGAAAAAACTAATACCTACTTGACTATAAATGCCatttatatataactatatgttGATGCTCTATATTGTTATCATGATTATTTTGGAGGCACTTGCTGTTCTGAAGCATGATAGTTTGGGCAGGAAGAGCAGAGatatgctctctctcttagaCACTAGCAGACACCGTTCAGGCACAGAGGAAATATAATAAACGTTTGTCAAGAGTAAATCTAAAGAGTTGGTGAAATCAAAATCATTCATGAACAGCATGTAAAAAAacgttaaatatattatttttgtaattttgtaatctTTGTACATACGTTTAAataatgatgaatggaccaataaaaacattaaatctatAAAATC

Function

GO: NA

KEGG:

id description
K16505 CDHR5, MUCDHL; cadherin-related family member 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102542 lncRNA downstream 23494 24127647 ~ 24133645 (-) True G76095
TU102587 lncRNA downstream 47279 24105501 ~ 24109860 (-) True G76125
TU102586 lncRNA downstream 50017 24105501 ~ 24107122 (-) False G76125
TU102555 lncRNA downstream 85463 24070698 ~ 24071676 (-) True G76104
TU102517 lncRNA downstream 106621 24048576 ~ 24050518 (-) True G76080
TU102626 lncRNA upstream 7697 24188344 ~ 24190304 (-) False LOC111193111
XR_002650265.1 lncRNA upstream 7736 24188383 ~ 24190313 (-) False LOC111193111
XR_002650266.1 lncRNA upstream 7736 24188383 ~ 24190077 (-) True LOC111193111
TU102752 lncRNA upstream 60265 24240912 ~ 24243842 (-) False deaf1
TU102763 lncRNA upstream 98193 24278840 ~ 24279088 (-) True G76247
XM_022672398.1 mRNA downstream 1118 24150425 ~ 24156021 (-) True LOC103033668
XM_007235161.3 mRNA downstream 113986 24037257 ~ 24043153 (-) True LOC103039440
XM_022672375.1 mRNA downstream 182854 23925268 ~ 23974285 (-) False LOC103036104
XM_007235133.3 mRNA upstream 60251 24240898 ~ 24260530 (-) False deaf1
XM_015601842.2 mRNA upstream 60251 24240898 ~ 24260529 (-) True deaf1
XM_007235136.3 mRNA upstream 60251 24240898 ~ 24259181 (-) False deaf1
XM_007235131.3 mRNA upstream 82100 24262747 ~ 24274199 (-) True pgghg
XM_007235132.3 mRNA upstream 82100 24262747 ~ 24272334 (-) False pgghg
XR_002650263.1 other downstream 1643415 22456331 ~ 22513724 (-) False LOC103024007
TU101746 other downstream 2884122 21270129 ~ 21273017 (-) True LOC111193105
trnat-agu_2 other downstream 3260963 20896103 ~ 20896176 (-) True trnat-agu_2
TU101364 other downstream 4056889 20087418 ~ 20100250 (-) False hsd17b12
TU101358 other downstream 4125112 20027162 ~ 20032027 (-) True G75207
XR_002650267.1 other upstream 3922 24184569 ~ 24188202 (-) True LOC111193112
TU102973 other upstream 733651 24914298 ~ 24920365 (-) True G76377
XR_002650272.1 other upstream 768397 24949044 ~ 24950022 (-) True LOC107197705
TU103036 other upstream 1003562 25184209 ~ 25184469 (-) True G76424
XR_002650273.1 other upstream 1108203 25288850 ~ 25301768 (-) False rab3il1

Expression Profile