RNA id: XM_007239845.3


Basic Information

Item Value
RNA id XM_007239845.3
length 3106
RNA type mRNA
GC content 0.49
exon number 11
gene id hnrnpr
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 4929177 ~ 4935065 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctctctgtgtgtctgtgtgtgcgcgtgcctgtgtgtgtgtgtgagagcgcgCGCACGTCTGTCTGTCTCGTGGACAGAGCCCTCAGCAGCTCCCCTCGCTCCGCTCTTCTAACCGCCGCTTCCAGCgcccacagcagcagcagcacggcCGCGGGTTGGAGGAGCCGCCCTCGCAGGAGAACCCACACCAGAACCGAACCGAACGAATGGCTGCTGAAGTGAATGGCAGCTCTGCTCCAGCAAAGGAGGAAGAAGAACCCATGGATGTCTCAGCCGGACACTCAGAGAACTACCAGACGCTCATAGATGCTGGGCTGCCCCAGAAAGTTGCAGAGAGTCTGGACAACATCTTTCAGACTGGTTTGGTGGCTTATGCTGACCTAGATGAGAGGGCAATCGATGCCCTGCGGGAGTTTAATGAAGAAGGAGCGCTGTCTGTACTGCAGCAGTTTAAGGAAAGCGACTTGTCCCATGTGCAGaataaaAGTGCTTTCCTGTGTGGAGTCATGAAAACATACAGACAGAGGGAAAAGCAAGGCAGCAAAGTACAGGAATCCACAAAAGGCCCAGACGAGTCAAAAATTAAGGCACTGCTGGAGAGGACAGGCTATACCCTTGATGTTACTACAGGCCAGAGGAAGTATGGTGGCCCACCACCAGAGGAGGTGTTCTCTGGCACTCAGCCTGGCATCGGCACAGAGGTGTTTGTGGGAAAGATCCCTCGGGACTTATATGAAGACGAGTTGGTTCCACTTTTTGAGAAGGCTGGGCCAATATGGGACCTGAGGTTAATGATGGACCCGCTGTCTGGGCAAAACCGCGGTTATGCGTTTATCACCTTCTGCAGCAAGGAGGCTGCACAGGAAGCTGTGAAACTGTGTGATAATTATGAGATCAGGCCAGGCAAGTATCTGGGTGTCTGCATCTCTGTAGCCAACAACCGCCTGTTTGTCGGCTCAATCCCAAAGAACAAGACCAGGGAGAGCATCCTGGAAGACTTTGGAAAAGTGACAGAGGGTCTGCAGGAAGTGATTCTGTACACGCAGGCTGATGATAAGAAGAAGAATCGGGGGTTCTGTTTCCTGGAGTACGAGGATCATAAGTCGGCAGCTCAGGCCCGTCGGCGGCTCATGAGCGGCAAGGTTAAGGTTTGGGGGAATCCTGTTACCGTTGAGTGGGCTGACCCAGTTGCTGAGCCTGATCCTGAAGTCATGGCCAAGGTGAAAGTGTTGTTTGTTCGTAAACTAGCCACTCCAGTTACAGAGGAattgctggagaagactttctCCCAGTTTGGAAAGCTTGAGCGTGTTAAGAAGCTGAAAGACTATGCTTTCGTGCACTTTGAGGAGCGAGATGCTGCTGTCAAGGCTATGGAGGAGATGAATGGTAAAGAATTGGGGGGAGAGGAGATTGAGATTGTCCTGGCTAAGCCCCCAGACAAGAAGAGGAAAGAGCGACAGGCTGCCAGGCAGACCAGCAGAAATACAGGGTATGACGACTATTACTATTACCCTCCTCCCCGCATGCCACCTCCAGGGCGTGGGCGTGGCCGAGGGGGGAGGGGAGGCTATGCGTACCCTCCTGACTACTATGGCTATGAAGAGTATTATGACGACTACTATGGCTATGATTACCACGACTATCGTGGCGGCTATGATGACCCTTACTATGGTTATGACGACATGTATACCATGAGGGGGCGTGGCAGTCGTGGTAGCCGTGGTGCTCCACCCCCTCCTAGAGCACGTGGTGTACCTCCAGCCCGTGGTGGAAGAGGTGGCTACGCGCCAAGAGGAGGTGCTCCCATGGGAGCAGGCCGAGGAGGGCGTGGTGGGGGACGTGGCGGACCCTTCCAGCCTCCTAGGGGGCGTGGCACCAGGGGGGCCCGCGGAAACCGCGGCGGAAATGTTGGCGGGAAAAGGAAGGCTGACGTGTTCAACCAACCCGACTCGAAGCGCCGCCAGACGACCAACCAGCAGAACTGGGGGTCACAGCCTATCGCTCAGCAGCCGTTACAGCAAGGTGGCGACTACGCTGGCAACTACGGTTACAGCAACGACACTCTGGAGTTCTCCCAGGATTCCTATGGCCAGCAGTGGAAGTAGAAGACACAAACAGCAACACAAAAAGGTATTTGGCTACAAtaagaaaatgacaaaaaaaataatcacaacaGAACACCCACCCTCCCCCTTcctgtgagaaaaaaaagacattgatTGGCACGCAGTGTTTAACTGACTTCTATTCTCCATCTCCCTCTGTAGAATATGTCAGTGACACAAAAAGGACACGCCCCCCCAGAATTGGCATCACAAatcctgattggctgaaagTACGTTTTGGCTGAAGACAAGAATGTATCCGATCCTCCTCCTGCCCCTGATTGGTTTGCTTACACACAGGCCTGACCGGGACATTTGTCTTAAATCATACTCCACTTTTATCCCTTccatttgttctttgttttaaagCCAGCAAcgaacattttaaagaaacaagGACTTTTTgacgtctaaaaaaaaaaaagaaaaagtaataaaataaacaagcaTAACAGTCTGAGAGAACATTAAAATCATGAAATGGTCTTGCAGAAAGCTCATGTCCAAACATTCAACTCACCCAACCACCCACCTGTCCCCCCATACTGGACACCTTCTTATGTCCCCCTTACCCCGTCGCttgctctatctctctatttctctctatttctctgtgaTTTCTGCTAGTGGCATAGGGACTTGCTTGTAAATAATGGCTGTCAGCtttagcttcattttcatttttttcttttttcagaagTGGAGAAAAGAATCCACTGGAAGGAAAAAAGTTTTGTAGCTGGAAGTACCATTAAACGTGTATGTTTAGCATTTCTAGAAGTAGTtcaattgtgttttttaaaaactgatataACAACTTCAaacgttttttttctctcctttttttttgaaATTTGCTCGTTAGGACTTGGTTTGGCTCACCTTAAGAGCCGTGACAGTTTGTTCTCTGATGTTTGtatttataacttttattttttgtttgttccgTTTCAATAAAAACTCATCCGAGCAACATCAATTGGTCAAGTAACTTGAAA

Function

GO:

id name namespace
GO:0048846 axon extension involved in axon guidance biological_process
GO:0000166 nucleotide binding molecular_function
GO:0003729 mRNA binding molecular_function

KEGG:

id description
K13161 HNRNPR; heterogeneous nuclear ribonucleoprotein R

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96100 lncRNA upstream 7357 4915813 ~ 4921820 (+) True atpif1
TU96070 lncRNA upstream 84964 4744153 ~ 4844213 (+) True G71215
TU96062 lncRNA upstream 250455 4678331 ~ 4678722 (+) True G71209
TU96054 lncRNA upstream 306937 4621818 ~ 4622240 (+) True G71201
TU96047 lncRNA upstream 417780 4510801 ~ 4511397 (+) True G71194
TU96107 lncRNA downstream 6344 4941409 ~ 4942117 (+) True G71244
TU96119 lncRNA downstream 23091 4958156 ~ 5006225 (+) True G71248
TU96110 lncRNA downstream 28906 4963971 ~ 4968919 (+) True G71246
TU96132 lncRNA downstream 55787 4990852 ~ 4993179 (+) True G71256
TU96138 lncRNA downstream 66026 5001091 ~ 5043758 (+) True G71260
XM_007239844.3 mRNA upstream 7358 4915821 ~ 4921819 (+) False atpif1
XM_015603237.2 mRNA upstream 44689 4857848 ~ 4884488 (+) True LOC103029142
XM_022671986.1 mRNA upstream 490421 4357065 ~ 4438756 (+) False LOC103028288
XM_022671984.1 mRNA upstream 590095 4306665 ~ 4339082 (+) True dpy19l4
XM_022671985.1 mRNA upstream 590095 4309594 ~ 4339082 (+) False dpy19l4
XM_007239848.3 mRNA downstream 8141 4943206 ~ 4954889 (+) True dnajc8
XM_022671992.1 mRNA downstream 113441 5048506 ~ 5067507 (+) True cfap69
XM_022671993.1 mRNA downstream 133836 5068901 ~ 5082606 (+) True LOC103041177
XM_007253633.2 mRNA downstream 156813 5091878 ~ 5117839 (+) True LOC103040455
XM_007253634.2 mRNA downstream 156816 5091881 ~ 5112015 (+) False LOC103040455
TU95569 other upstream 1354419 3412451 ~ 3574758 (+) False LOC111193071
TU95561 other upstream 1550567 3377684 ~ 3378610 (+) True G70846
TU95246 other upstream 2569948 2358883 ~ 2359229 (+) True G70604
TU95147 other upstream 3659773 1268767 ~ 1269404 (+) True G70522
TU94981 other upstream 3923339 1005483 ~ 1005838 (+) True G70385
LOC111193076 other downstream 21214 4956279 ~ 4957026 (+) True LOC111193076
TU96113 other downstream 21233 4956298 ~ 4980011 (+) True G71247
TU96114 other downstream 21233 4956298 ~ 4980011 (+) False G71247
TU96122 other downstream 28637 4963702 ~ 4967907 (+) True G71249
LOC111193046 other downstream 44402 4979467 ~ 4980022 (+) True LOC111193046

Expression Profile