RNA id: XM_022672290.1


Basic Information

Item Value
RNA id XM_022672290.1
length 3843
RNA type mRNA
GC content 0.41
exon number 9
gene id prr5l
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 20014235 ~ 20024227 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCAGAGCCCGAAAGCTGCTAATGAATCAGCAGTAGTGGGAGTAAGTTCTGTTGCCCATCTTGACAGTCATATATGCCCATAATTGACAGATGGCGAGCAGATCTGTATGACGTTTTTGTTCGTACTCATTATGCAGtcgaaaaagaaaatcaaagttTATGTATCCGTAGCCATCCAGTGCCTAGTTTTCTAATTTAGCTGATCTAGAAATAGAATGTGATTCATTAAAGCATAAATATACTGCCTTTTTTTACCCAAATTAATATTCCAGTATTTTCAACCTCCTCTAAATAGCAGTGATGATAATTAGAAGTAATTTTCACATGAGTCCCTTGGGAATGTAACAGTTCAACATATCACGTTGCAATTTGGAATAATGCAGCTGTATTTTATGATGTGCTGTTGTATCATGAGCACAGGCTGGTTGGTGGCTAGAGCTTGAGGTTGGGGCACAGTTATGAAATTTGTGTATTATCAAACCAGTAGTGTCACTGTGAGTGTAAGTACAGAACAGAAAACCAACTTGTTCAGCACCTTTTATTAGAACCCTGTGGGGAGCTAGCTTCTATCATAAGCGTGTTTTGAGTCAGCAGGTGTTTTACAGTAGGAGGAAGTTGTTGTCTGTGGTGACTGgagataaagtaaaaaaatagatagatagaatttgcatatttttgtacaattttatatctttattaggacatcaattttaaaatgtgtttgtgtgtgtttttaaaaaagtatataaaaaacatatataaaattgtTACGCAGGTTGGTGAACCTTTTATTTTTGGGGCTCATAGGCTGGTGTCAGATGTGTGTGGGACTGAGCTGCAATGTGTCAGGGTGAGGCACAGCCTGGTTATGTGTGAGCAGTATGGCCTGAGTCAGAGATCTACAGCACACTCAATGACCATGCATGCATGTGTTAAGGAGACAGCTGTTGTCATCTTCACAAGCATCAGTAGCATCAGATGTTCTTAACTGACTCTAATTCAGCTGGTGTATTGAATCGGTCAGATCGGACAGACAATTATAGATACTCCATATGCGCAAATGTTTGTGGACGACCCTTCAAATTGATGCATTCAGCTACTATATTGCACCCATTGTTTTCACACATCTGCAAAAACACATCTGTCCCTGTGGTGAAGTAGAACAAGAGTAGGACCCAATACTGAGATGTGAAGCAGTTCTATCCAGTACTTGTGGGAGGAGCAGGGGTGAAAATGCAGTCAGAATCCTCACAGGAATGCTCCACGATTTTGTAGAAAACCTTCTCTGGACAGAAGAGAGTTTctccaacaaaagtaggataaactctttattaaaaaacaatgttttcagAAGAAACTAAGAAACAAATGCGATATTCAGGCAGTGTTGCAGGTGCTATAGACGTCAgtagttttctttttctttcttttttaatatgacAGCACTGCATGTTTTTGTCATGCTGCTCAGGAACACGGTTTTGCAGAGGTTAGGCAGGAAGCTTGAAGACTACAGACCAAAGGAATTTTTCTGTTATCTGGTGGGCTTCACTTTCACTGAATGATGGGATCTTTTCGGCGGCCCAGGCCTCGCTTCATGAGCTCAccagtgctttcagacctggCACGCTTCCATGCCAGCTCTCCAACCCTGCAGCTCTCTAATGCAAGTGTGTGGAACAGTGTCCAAACCGCTGTCATCAAAGTGTTCCAAGGAGGAGGACTTCAGAGCAATGAGCTGTACAGCCTGAATGAAAGCATTAGGTGGCTTCAAAGGACAGAGTTGGGTTCCTTCATCACAGAGTACTTTCAGGATCAGCTCCTGACCAAAGGACTGGCACATATACTGGAAAAGATTCAGCATCATGATGATGAAAACTGCCTCCAAGCTTTGTCTGAGATGTGGGTAGCATTTTTCACTGAGATCCTGCCAACGCTTCAAGCCATATTCTATCCTGTACAGGGCCAAGAGCTGACGGTGAGGCAGATGGCTTTGCTCGGTTTTAGGGACCTGGTCTTGATGAAGCTTCCTTTGGAGAACATGCTGCAAACAGCCCCTTACCCTCCTGCTATAATACAGATGCTGCTCATACTACAGggtATTCATGAGCCTAGTGGGCCAAGAAAAGAGTACTACCAACTGGAGAGACTGGTGGATATGGTGATTTCACCGTACCTCTACATAAGCCACCAGGACTCGTCTTCGGAGTGTCATTTGGAACAGTCCTCCTCAGTGCACTTTGGCCAGCCAGAGATCACAGTCACACCTTTTGGTCCGGAGTCGTTGCTGGCGCCTCTCTTCGAGCACGAAGGTGAGGCCTATTTGGAGAGGACCGGAGGCGTGCGGCGGCACACAGTTGCTAACATTCACTCAGACATCCAGCTTCTCTCCATCACAAACAGAATTCAAAcatctgatgatgatgatgatgatgatgatgatgatcatgaCAGTGGGAGCATCCAAGGAATAAAATCAGGGAGATGTGGGTCTCCTAGACCGTTTTCCAGTGAACCAGTAATACTGGACTTGCGATCAGCTGCATCATCATCGTTAAGACGTCCGAATCCTGCTCACCTGAGCTGTGAATTGGCAAGCTGAAGTGTCTTAATGGACCAGGGAGTACCCTGAAGATGCCTACCAAGCGTGCTTTTGATCCAGAGTGGTCTGCTTATTACATACACTGTGATCTGCAGTAAAATTGGGTAAGAAACGAGTCATCTTACACAAAGCCTAACAATGATTTCAGGTATTTTCACTAGCAATGGAATTGTATAGGGCATCAAAAGCAGTTGCAGTGTAAAATAGGCCAAACTGACCACTGAAACACTTTCTGCAAAACTTCCTATGGAATTATATTTGGCATAAGTTGTGTAGAAGTGGACCATACAGGTGCTTCAAGTGTACATTTTTGGACAAATTTGCACAATTAACTAATTTAATCATAAAAGAGCAAACTAAAAGTGGGCAGTGgaacatttcacccaaataaacttctCCTCTCAAGTTCCTGTAACAGTTTTCAATGTGCAGTAGGTTTAACATACATTAATAGTAATTCTTTGGTACAGTTTATCCAGGGAACTGCTTAAAGAGCTAAATAGAACATGGAATTAGCACAGTCACCTTCTTTGTAGCTCTCTAAAAAGGCTGCGACTTTCCCTCTGTGGAAACGGCAAAGCTGTGTGGAATTTCAGCCCTGCTGAGATACAAGAGTTTACATAGCTGCAGAAAGGCAGGGGTTCACAACTTGTACTTGGCTGGCCAGGGTGCAGGACAGTTTGCTGACATTTTTCCTTTTGTTCCCCACTGTGACACAACTACtgaactttttatatttataggaATGGTTCAGATAGTAATACTAAATCTACTAACCACCagtaaatgcaaaaatacaacTGTTAGCATTGGAAAACTGACATTTGTCTTAATTGTTGGATCTTGGCCTGCTTTCACTGTAAGCAATGTTAACTTGTTTGGATAAGACGTTCATGTAACTGACAAGTTAATTCAAATGCTTTTGAGCTGGAAAATTGGCAAACTGGACTCTGAACTGTTACTGAAGTTGCGCACCAGTGCTACAGTGAGGTATTATTTCTGACTGAGCTTTCAGCTGTATGGGATTATTGACTTAAGGTCACTGCCTTACACTTTTCTTGGTTTGAGACATTTATGCTCTTTCATAGTTTATAGTGTCTTGAGGGAAACTGTTATTTTATGTAAAGAATATGTTCTATGTTTGactaattatgtttattttattttgtgacattgtgttcagtaatgtgtacagtagtgtcaatttactgtaaaataaacaaagacaaaataaagcatttt

Function

GO: NA

KEGG:

id description
K20411 PRR5; proline-rich protein 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101114 lncRNA upstream 211923 19804766 ~ 19804976 (+) True G75034
TU101113 lncRNA upstream 217250 19799385 ~ 19799649 (+) True G75033
TU101106 lncRNA upstream 251134 19761774 ~ 19765765 (+) True G75026
TU101087 lncRNA upstream 283861 19732016 ~ 19733038 (+) True G75017
TU101058 lncRNA upstream 367515 19624659 ~ 19649384 (+) True G74995
TU101257 lncRNA downstream 36143 20060370 ~ 20122740 (+) True G75131
XR_002650258.1 lncRNA downstream 260450 20284677 ~ 20287412 (+) False LOC111193104
TU101308 lncRNA downstream 260937 20285164 ~ 20288047 (+) True LOC111193104
TU101324 lncRNA downstream 427960 20452187 ~ 20452452 (+) True G75184
TU101332 lncRNA downstream 552051 20576278 ~ 20577245 (+) True G75192
XM_007246614.3 mRNA upstream 144187 19859433 ~ 19872712 (+) True LOC103023471
XM_007246612.3 mRNA upstream 145321 19859434 ~ 19871578 (+) False LOC103023471
XM_007246615.3 mRNA upstream 158064 19854598 ~ 19858835 (+) True LOC103024220
XM_022671921.1 mRNA upstream 172677 19843302 ~ 19844222 (+) True LOC111193059
XM_007246635.2 mRNA upstream 230794 19772487 ~ 19786105 (+) True LOC103030754
XM_022672291.1 mRNA downstream 2950 20027177 ~ 20034797 (+) True api5
XM_022672296.1 mRNA downstream 124435 20148662 ~ 20160102 (+) False rfwd3
XM_007244255.3 mRNA downstream 124459 20148686 ~ 20160102 (+) True rfwd3
XM_007244256.3 mRNA downstream 136674 20160901 ~ 20191617 (+) True LOC103028218
XM_022672305.1 mRNA downstream 179566 20203793 ~ 20207955 (+) False LOC103028745
TU101007 other upstream 483826 19527991 ~ 19533073 (+) False LOC103044129
TU100801 other upstream 931343 19082816 ~ 19085556 (+) True G74832
TU100573 other upstream 1561702 18454851 ~ 18455197 (+) True G74649
TU99974 other upstream 3728570 16286676 ~ 16288329 (+) True G74169
XR_002650242.1 other upstream 5095896 14891534 ~ 14921003 (+) False rpgrip1l
TU101298 other downstream 179392 20203619 ~ 20207922 (+) True LOC103028745
TU101630 other downstream 999029 21023256 ~ 21025128 (+) True G75383
TU101641 other downstream 1064395 21088622 ~ 21096906 (+) True G75391
XR_002650259.1 other downstream 1226240 21250467 ~ 21264776 (+) True mov10l1
TU102047 other downstream 2730925 22755152 ~ 22772561 (+) False LOC103028957

Expression Profile