RNA id: XM_022672295.1


Basic Information

Item Value
RNA id XM_022672295.1
length 1135
RNA type mRNA
GC content 0.49
exon number 11
gene id alkbh3
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 20073506 ~ 20081335 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCATTCAAAGAGGTTAAGGGGGTTTGAAACCAATAGCTTAAGTAAAAAAACGTGACTTTGTtacttcagcttctacagaagtattttaaaccttaGTATATTTAactctacctgagtaatgaatgtgaatacttttaacACTTTACAGTTACAGTGTTTTTGTAGCATGGTGAATTTGTAGGAACTAGGAACTATTGTACAGGTGGTGGACTGAGGAAAGTCGGACGGAGAGGGGGAAAACACTGTGAAAGCGAGTCTCAGCgTTAATTTGACCTCTATGGGTGACAAACGTCAGAGAGCAAGAGTGCAGGGCTCTTGGGCAAAACCTGCAGGGAAACCCTCTCACTCAGTTGCAGGTCGGCAGCAGCCAGTGCCCGGGTCATGGAACACTGGGAACGTACCAAGAACATATGAGTTCCATCAACCAGCTGATCCGGTCAGAGTGATACCTGTGGAAAAGGTGCTAGAAGAGGCTGGGGACTATGAGATTAGCCAAGGTCCCACTGGAGTGTCCAGACTGCGGCTCCTTCCAGGGTTTCTACCCGTGGAAGAGGCTGACTGGATGTTCGCTAGACTGATGGCCGAGCTGCCATGGTCACAGAAGACCAATTATAGGATGATGGGTGAGGCATATGAAGAACCCAGGCTGACCTGCTGGTATGGAGAACTGCCTTACACTTACTCCCACTCCACAATGGAAGCTAACCCTCAGTGGCATCCTGTCCTCACAACCCTGCGCCAGGCCATTGAGCGGGAGACCTGTCACACATTTAACTCATTACTCTGTAACTTGTACCGTGATGGAAAGGATAGCATTGCGTGGCACAGTGACGACGAACCCTCTTTAGGCCCTCAACCCACCATCGCCTCTCTCAGTCTAGGGGACACTCGAGCCTTTAGCCTCCGGAAGAAACCACCTCCAGAGGAGAAAGGGGATTATACATATACAGAGAAACTAAGGGTACCGCTGAGTCATGGTACACTCCTCATTATGGAAGGCTGCACGCAAGAAGACTGGCAGAAACAGTGATCTAGAAAGAAGTAAGAGCATCAGGTGGCAAAGGAGTACCATGACCGAGGCCCTAGAATAAACCTGACCTTTCGTACAATCTACCCAGAACATCCCTCCAAGAGA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016706 2-oxoglutarate-dependent dioxygenase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101362 lncRNA downstream 39364 20032610 ~ 20034759 (-) True G75208
TU101227 lncRNA downstream 201442 19871142 ~ 19872681 (-) True G75106
TU101228 lncRNA downstream 201442 19871142 ~ 19872681 (-) False G75106
TU101207 lncRNA downstream 269153 19804766 ~ 19804970 (-) True G75093
TU101206 lncRNA downstream 274498 19799385 ~ 19799625 (-) True G75092
TU101365 lncRNA upstream 3094 20084429 ~ 20086739 (-) False hsd17b12
TU101368 lncRNA upstream 20377 20101712 ~ 20124437 (-) True LOC107197502
XR_001518595.2 lncRNA upstream 20546 20101881 ~ 20129570 (-) False LOC107197502
XR_001518596.2 lncRNA upstream 20546 20101881 ~ 20126506 (-) False LOC107197502
XR_002650257.1 lncRNA upstream 20546 20101881 ~ 20122742 (-) False LOC107197502
XM_007244247.3 mRNA downstream 12048 20060386 ~ 20062075 (-) True c8h11orf96
XM_022672292.1 mRNA downstream 22838 20037455 ~ 20051285 (-) False ticrr
XM_007244246.3 mRNA downstream 24851 20037455 ~ 20049272 (-) True ticrr
XM_007246616.3 mRNA downstream 101465 19939635 ~ 19972658 (-) True LOC103024527
XM_022672285.1 mRNA downstream 301798 19762795 ~ 19772325 (-) True LOC103030439
XM_007244252.3 mRNA upstream 3093 20084428 ~ 20100249 (-) True hsd17b12
XM_022672304.1 mRNA upstream 111190 20192525 ~ 20206698 (-) False LOC103045029
XM_015604527.2 mRNA upstream 111190 20192525 ~ 20200987 (-) False LOC103045029
XM_015604526.2 mRNA upstream 111190 20192525 ~ 20200984 (-) True LOC103045029
XM_022672308.1 mRNA upstream 162031 20243366 ~ 20253823 (-) False LOC103029688
TU101358 other downstream 42096 20027162 ~ 20032027 (-) True G75207
TU101215 other downstream 208141 19859694 ~ 19865982 (-) True G75100
TU100809 other downstream 1001235 19070938 ~ 19072888 (-) True G74838
TU100745 other downstream 1133659 18939174 ~ 18940464 (-) True G74791
TU100498 other downstream 2044376 17982747 ~ 18029747 (-) True G74591
TU101364 other upstream 6083 20087418 ~ 20100250 (-) False hsd17b12
trnat-agu_2 other upstream 814768 20896103 ~ 20896176 (-) True trnat-agu_2
TU101746 other upstream 1188794 21270129 ~ 21273017 (-) True LOC111193105
XR_002650263.1 other upstream 2374996 22456331 ~ 22513724 (-) False LOC103024007
XR_002650267.1 other upstream 4103234 24184569 ~ 24188202 (-) True LOC111193112

Expression Profile