RNA id: XM_022672312.1


Basic Information

Item Value
RNA id XM_022672312.1
length 2352
RNA type mRNA
GC content 0.41
exon number 5
gene id LOC103034349
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 20917506 ~ 20923676 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tggatgtGGGTGGATGAATAGGAAGATATGGGAAGGGGGGCCTTATACGTCGCTACACCCTCATAGTCATAGCTTATTACAAACACAGTGAAACCCTTCGCTGGACCTGAGGAGATGCAGTGGTGCAAGTGGGCAGGAAACTGGAAATCTCGCCTACCAGGACAGTTTACAGGAGCACAGGAAGAGGATGCCTGCGATTTCCTCTTTAAAATTATCTTCATTGGAGACAGTGATGTGGGAAAGACGTGCGTTATCCACAGCTTCAAATCTGGAGAGTTCAGAGATAAACACCAAAACACTATTGGTGTAGATTTCACTGTGCATTCCATGGACATAGATGGAAAGAGAGTGAAGATGCAGATATGGGACACGGCTGGGCAGGAGCGTTTCCGCACCATCACGCAGAGTTACTACCGCAGTGCTCATGGGGCCATGATTGCTTATGACCTGACACGTCGCTCTACCTTTGATTCACTACCTCACTGGATACATGCTGTAGAGCAGTATGGAGCTGCCAATGTAGTGTTTGTTCTTATAGGTAATAAGTGTGACCTGGCTCACCAGCGGCAGGTGCTGTTTGAAGATGCCTGTACACTGGCAGAGCAGACTGGGTCCCTGGCAGCCCTGGAGACATCTGCTAAAGAAAATCACAATGTACAAGAAGCATTTGAGCTAATGGCAAGGGAACTCATTGTAAGAAGTGGAGGCTTAATCAATCCAGATGACCAGTTTGACTCTCCAAATATTCTCTACTCTGACTCTCActcaatagaagaagaagagccTTTAAAGAAGCCATGTGGttgttaaaatatgtttctttgaGAACAACGACCCTTCCTGGACCTTTTATCACTTCTGGGATTGGTATTCTTCTAGTGTGAGGTTTAACCACATTAATACAGAATGCACTGGGCTAAGATCAGCACCTAGGACAAGAAACACCtaggctatgttcagactgccagctcaaatctgattcagcctatctagattgtatccaaattCATATTTGATAGACTGTACAGCGAATCGTTTTCAAACATTTGAAATGCAATTGCATTCAGATTCAGAATTGCATTCAGATTCCTCAGTCGGaatgctcaaatcagatttaattGTGTCTTTTGCATCAGTCACAACAAAGAACAACCTCAACAAATCCATAGTGACAAAAGTGAGAGGGGGTCTAAGAAATGAGTCAAAGATTAGTTACTGATGCTGACCTTGTAACCACAGCAGCCCATgcagatatgtttttttatgtccaGACATGCAAAACTGATCTTTTTGCTTCTAAATAACAGTGCAGACAGTCATCTCAACCGTTTTttatttgaggaaaaaaaatccagtttgCCTGCAGTCTTAACATCGCCCTAAAAATCACTCTACTCACTAACACTAACATTTAAAGTGTATATAGAAAGAATTCAGTGTTTCAAATTTCCACACTTTATTTTACAGCCAAAATGGATTCAATTCATGTTTCCCCTCAAAATTCTACATGAAAaggttttaatttattattaacttCTTTACAGAAGTTTTACACCTTTGCCATGATGCTCAAAATTGAACACAGGTGCATCCTGTTTCCACTGATCATCCATCATTTGTACGTTTCGTTAGAAGGGCATTTGTCAAAATGGTGACCAAGAACCCAAGGGCCATTCTGACAAGAGCTTCAGCATTGCTCTGTGAAGAGAGGAGAACCTTCCAGGTCTACCATATCTGCTGCATGCCACCAATTAGGACTGTATGGTAGAGTGACCAGATGTAAGCCACTCTTTAGTAAAGACAAAAACAGACACAGGTACCTGAAGGACTAAAGAAAACCAAATTCTCTGGTTAAAAGCTTTGGCCTATATGCCAAGCATCATGTCTGAAGAAAACCAGGCACTGTTCATCTCCTGGCCAATCCCATCCCTacagtaaagcatggtggttGCATGTCCTGCGAAGTAGAATGGGAGACACTGCCCAAATATAGGCGCACCAAGCATGTATTACATACTCAAAAAGACTTGAGGCTGTAATTTCTGCCAAAGGTGCTTCAACATTACGCAAAAGATGTTAAAACTTGTGTACATATTTGTGATTTTTCTGATGttgatttttaataaattattataggGTATTGTGAGTAGAATTGTGatggaaaacaaattaaatctaTCTTGGAATTAGGCTGTAAcataaaatgtggaaaaagtaaAGCGCTGTGAACACTTTCCAGATGCACTCTAAAAGGAGGCAGGCTATGACATGTTACAGTAAGTGTACAGGGaatcatgtttgtgtttttaatgtattaactTATGAATTAAAGTAACTACAACttgtaaaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101511 lncRNA upstream 7262 20887155 ~ 20910244 (+) True G75313
TU101513 lncRNA upstream 7262 20903076 ~ 20910244 (+) False G75313
TU101501 lncRNA upstream 43625 20869710 ~ 20873881 (+) True G75309
TU101490 lncRNA upstream 76525 20840533 ~ 20840981 (+) True G75300
TU101332 lncRNA upstream 340261 20576278 ~ 20577245 (+) True G75192
TU101507 lncRNA downstream 15675 20939351 ~ 20941050 (+) True G75310
TU101527 lncRNA downstream 21937 20945613 ~ 20947024 (+) True G75323
TU101557 lncRNA downstream 52291 20975967 ~ 20976313 (+) True G75342
TU101628 lncRNA downstream 123139 21046815 ~ 21047280 (+) True G75381
TU101654 lncRNA downstream 224132 21147808 ~ 21148349 (+) True G75403
XM_015604493.2 mRNA upstream 1606 20912781 ~ 20915900 (+) False ccdc34
XM_007244274.3 mRNA upstream 1606 20912807 ~ 20915900 (+) True ccdc34
XM_007244271.3 mRNA upstream 22408 20881830 ~ 20895098 (+) True LOC103033048
XM_015604555.2 mRNA upstream 36940 20877417 ~ 20880566 (+) True faap24
XM_007244266.3 mRNA upstream 284963 20289830 ~ 20632543 (+) True wwox
XM_007244279.3 mRNA downstream 4614 20928290 ~ 20936087 (+) True ccdc77
XM_022672313.1 mRNA downstream 51114 20974790 ~ 20990577 (+) True LOC103037268
XM_007244289.3 mRNA downstream 68082 20991758 ~ 20998066 (+) True LOC103038014
XM_007244405.3 mRNA downstream 93778 21017454 ~ 21021871 (+) True LOC103046250
XM_022672316.1 mRNA downstream 124220 21047896 ~ 21057840 (+) True thoc5
TU101298 other upstream 709584 20203619 ~ 20207922 (+) True LOC103028745
TU101007 other upstream 1384433 19527991 ~ 19533073 (+) False LOC103044129
TU100801 other upstream 1831950 19082816 ~ 19085556 (+) True G74832
TU100573 other upstream 2462309 18454851 ~ 18455197 (+) True G74649
TU99974 other upstream 4629177 16286676 ~ 16288329 (+) True G74169
TU101630 other downstream 99580 21023256 ~ 21025128 (+) True G75383
TU101641 other downstream 164946 21088622 ~ 21096906 (+) True G75391
XR_002650259.1 other downstream 326791 21250467 ~ 21264776 (+) True mov10l1
TU102047 other downstream 1831476 22755152 ~ 22772561 (+) False LOC103028957
TU102309 other downstream 2563854 23487530 ~ 23487870 (+) True G75938

Expression Profile