RNA id: XM_007244277.3


Basic Information

Item Value
RNA id XM_007244277.3
length 2256
RNA type mRNA
GC content 0.43
exon number 8
gene id LOC103034889
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 20923738 ~ 20928274 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCAACGTATGCGCAGCGTGGCTGGGGCTGAATCAGTTAGCCGGCCGGCGGAAgactattttttgttatttatcgctgtatattttaaatattgtcgGGTTTCCTCAGGTTGcagatttattaaatatatatatatttgtcgtTATACATTCTTAATACGTCTGTCAGGGCCGTCGCCTGCCTTCTATAAACATTAGCTGCCGTGTTATTGTTTTAGaggactttattattatttcattagcAATGCTCTGTAGCTAACGCTGGTTAGCCTAACCAGCAGCCTGCTAGTAAGCTAGCTCCTGCGCTGTGTTGATTAAATCATATCACCAACACGAAGTGATGGCCGAGCTCTTTCCTCGGTTTAATCTGCTGAAACTGGGCTGGAGAGCTCTGAAATTCAGAAAAACATCTCCATTACCGTGCTCAGCTCAGACCAGccgaagcagcagcagcagcagtTGTGGACCCAGCTCATTTGGGTTGCTCTTCGACATTGATGGGGTCCTGGTCCGTGGAAGAACTCCCATTCCTGCAGCTAAGCAGTGCTTTAGGAAACTGGTGGATGGAAATGGAAAGTATAAAGTCCCTGTGGTGTTTGTGACCAATGCAGGCAACTCTATGCGCCAGACCAAAGCTGAACAGTTATCTCATCTTCTAGAAGTAGAGGTGTCACCAGATCAGGTCATGTTGTCCCACAGTCCTTTGCGGGTCTTCACTCAGTTCCATGAGATGTGTGTGCTAGTATCTGGACAGGGGCCGATTTTGGAAGTTGCACAAAATTTGGGTTTTCAAAATGTTGTCACTATAGATATGCTGAGAAAGGCATACCCTCTGCTGGATGTGGTGGATCACAACCGTAGACCCAAAAACGTGGTTCCATCTCCCAAAGAGTTACCACAAATTGAAGCTGTTGTTCTCTTTGGTGAGCCAATCAGGTGGGAGACTAATCTACAGCTAATTATGGATGTTCTGTTGACTAATGGAAGACCAGGAAACCCTGTAACATCCTTGCATTACCCACATATCCCTGTGTTGGCTTGCAATATGGATCTGTTGTGGATGGCAGAAGCAAAGAACCCTCGatttggTCATGGGATGTTCCTAGTTTGTCTGGAGAGTctctataaaaaaattacaggtcATGACTTGCAATATGAAGCTCTGATTGGCAAGCCCAGTGTGGTAACTTACAACTATGCTGAGCTGCTGATCAGACAGCAGGCAGAGAGTCTGGGTTGGACAGAACCAGTTCGGAGACTTTATGCCATTGGGGACAACCCAATGGCTGACATTTATGGCGCAAACCTCTATAACCGCTACCTACAGTCAACACGCTGTGCGAGGGCTCAGGTGCAGGCCCAGGGAGGCATCGCTGGTCAGGTAGCAGGTGATGTTCAGTATGAAACAGTTGATGATGCTAAAAACTCTGGTAAGGTGATGGTGGGGGGCTCATATGAGCATTGTTTGCCAGAGGGATGCAGCTCCATCCTGGTTTGCACAGGCGTCTACAGCCGAGACCAGGAGGACCTGGCCCCTGATCAGACAGTCACAGAGCAGCGTATTTTCCACGGGCATCGGGATTTCCGCTTTGACCCGAGCCTGATCCAGCCCAGGTTTGTGGTTCATGATGTACTAGAGGCTGTGGAGCTGGTCTTCCAGCAAGAGTCCTGTCCCCTTGAGTGAACCAAAGGCTCATCAGACCTACCAAGATTTATTACCTCACACACTGGAGGGTTGGGCAGGTCAAACAGTTGAACAGTTTTGACTGTAACAGCTTATATATGATAAAGGACattgattaatgtaaaaaaaaacatttttataatccaCCACAAAGAAGCCATATAAGCATTAAGACGAAAAGGAAAACAATGTtcaatgtttaaatgttgtgcAACATTGTGCAATCTTTCTTGTTTTAGTCTGTATAATATTATGCCACACttttatattgtgtatttttaaatagacATCAGGTTTACCATCATTTGTCAACACTGTCATCATGCAAATTGTTTTTATCAGATATGCAGGTTgtggagttttattttttattttttaagcttttaaaattgtatgcaaaatgttatattttttgcTCAGCCATACAATGCAATTTTTATttgtagatttaaaaaaagggaTAAATCTTGCCAGATGAATATTGTTTGCCTTGCTATTTGTCAGTTGCTGTTTTAAATTTGATATTGTTCTTTGCTTGTTCTCagccaaaataaatgaaattttgAGAATTCGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101597 lncRNA downstream 9652 20912831 ~ 20914086 (-) True G75357
TU101483 lncRNA downstream 128779 20794484 ~ 20794959 (-) True G75295
TU101478 lncRNA downstream 175659 20747698 ~ 20748079 (-) False LOC103032014
TU101461 lncRNA downstream 178027 20622641 ~ 20745711 (-) True LOC103032014
TU101612 lncRNA upstream 51128 20979402 ~ 20985652 (-) True G75366
TU101613 lncRNA upstream 57920 20986194 ~ 20986762 (-) True G75367
TU101673 lncRNA upstream 113833 21042107 ~ 21066403 (-) True G75419
TU101682 lncRNA upstream 133184 21061458 ~ 21063620 (-) True G75426
TU101678 lncRNA upstream 136074 21064348 ~ 21065147 (-) True G75424
XM_007244273.3 mRNA downstream 12880 20908879 ~ 20910858 (-) True LOC103033709
XM_007244272.3 mRNA downstream 18218 20903078 ~ 20905520 (-) True LOC103033388
XM_022672311.1 mRNA downstream 46359 20869687 ~ 20877379 (-) True LOC103032734
XM_022672310.1 mRNA downstream 60423 20840504 ~ 20863315 (-) True ankrd27
XM_007244268.3 mRNA downstream 175530 20743913 ~ 20748208 (-) False LOC103032014
XM_022671922.1 mRNA upstream 11644 20939918 ~ 20974749 (-) True LOC103036040
XM_007244290.3 mRNA upstream 75779 21004053 ~ 21007646 (-) True LOC103038341
XM_022672314.1 mRNA upstream 93692 21021966 ~ 21042030 (-) True morc2
XM_007244292.3 mRNA upstream 93692 21021966 ~ 21042029 (-) False morc2
XM_022672315.1 mRNA upstream 115207 21043481 ~ 21047306 (-) True LOC103039177
trnat-agu_2 other downstream 27562 20896103 ~ 20896176 (-) True trnat-agu_2
TU101364 other downstream 823488 20087418 ~ 20100250 (-) False hsd17b12
TU101358 other downstream 891711 20027162 ~ 20032027 (-) True G75207
TU101215 other downstream 1057756 19859694 ~ 19865982 (-) True G75100
TU100809 other downstream 1850850 19070938 ~ 19072888 (-) True G74838
TU101746 other upstream 341855 21270129 ~ 21273017 (-) True LOC111193105
XR_002650263.1 other upstream 1528057 22456331 ~ 22513724 (-) False LOC103024007
XR_002650267.1 other upstream 3256295 24184569 ~ 24188202 (-) True LOC111193112
TU102973 other upstream 3986024 24914298 ~ 24920365 (-) True G76377
XR_002650272.1 other upstream 4020770 24949044 ~ 24950022 (-) True LOC107197705

Expression Profile