RNA id: XM_007244279.3


Basic Information

Item Value
RNA id XM_007244279.3
length 1854
RNA type mRNA
GC content 0.47
exon number 12
gene id ccdc77
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 20928290 ~ 20936087 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGTTGAGGCGCCGGTAATACATAGTGACACCTTCCGGATTCAAGCAAACAAAAGCACGACTTTCGGCTGTTTTAAAGGCAGTAAATAAAGTGAGAGATGGAATCTTCTCCACAGCATGGTAGAGAGAGCTGCGAGGACAAGGAGGAGGTGGACTCTCCACTACCCCCCATCTCTGAGCGCTTGGCCTATCTGCGTCCATCTCGTGAGCTGCTGGAATTCTATAGGCAGAAAGTGGCCCAGTTTGATGAAGAACACGATGACCTGCTGCAGCTGCTAGAGAAGTACAGGAGCACTACAGAGGACCAGCACAAGCTGCAGTGGGAGGTGCGTCAGCGAGAGGAGGAGATAGCGGAGTTGCAGAAGGCTCTGAGTGACATGCAGGTCTACCTCTTCCAGGAGCGAGAGCAGGCCCTCCGCCTATACGCAGAAAACGACCGCCTTAAGATCAAGGAGCTTGAAGATCGGAAGAAGATACAACACCTTTTAGCTCTTGTGGGTCCAGATGTAGGCGAAATCACCTATTTTCACAGAGAACCTCCACACAAGgtTGCCATACCTCAAAAGAAGCTTCAACCCAGAACCCAGGAGtttgcaaaaacagcaaagccAAAGCTTGGATCAGTTCAAGAGGGAAGTAAGAGGCTGTCTAAAAATGGAGACACTAAATCAGAGCAGTACAAGAAAGATAACCAGACACTGTTGCTTCAGGTGGAGGCACTGCAGGCACAGCTAGAAGAGCAAACGCGGCTGTCTAAAGAGCAGGTGGAGGCCTTGCTGGAGGACAGGCGAATTCATGCAGAGGAGAGACAAGTCCAGCATCAGAGAGACCAAGAGCGAATCACTGCTCTCACTgagaaACTCCAGCGCACACAGAACCTGCTTTATGAGAGCACCAGGGACTACCTGCAACTCAAGTTTGAAAGTCGTGGGCATGAGAAGAGCTGGATGGGAGAGAAGGACAAACTGCTGCGAGAGCTGGACTCTTGTCAGGAAAGGCTAAAGGATTTCGCAGATCGTCCAGGACCCTCTGCAGCACCGCTGCTTCTTAGCCAGCCCACCACAGAGAGCAGCCATATGCACCGAGAAGAAATCAGAGCACTACAAGAGGAGCTAAAGCAAGCCCATAAGCTGGCAGACATGTACAGAGAGCAGTGTGTTGGTCTAGAGACAGACGTGGCACAAATCCGAGAGGAAGGAGATGTAGGCCGAGAAATCTTCAAGGAGCGCTCAGACAAAATAGCCAAGCGTCTTCAGCTAATGACCCAGCGTTACGAGGCTCTTGAAAAGAGGCGAGCTATGGAGGTGGAAGGCTTCAAAAATGACATCAAACACCTGCGGCAGAAACTCAAAGACGTAGAGAAACAGCTCTTTAAgGTGACTCTTAATGTGGGACCAGATCAAGACTTGGCCATCCTGCAGGAAGTTCGACAGTCGAATGCCCGCACTAAGAAAATCCAGGGGGAACTAAAAACTCTAAAAGCAAAGATATATGGGCTGGAAAATGAACTGAGAATCTGCTGATTTCTACAGTCACTTCTACTTTGAACTCTTAACTTGTTTGGGCTGTTTAACAATcattcattttagtttttatcagCAATGACAGTTCCATTAGTGGTAGCTGAGGTCCTCAGGCAGTCAATTATTGAACAATGTCTACATTTCTCGCTCTAGACTGGAGCCAGGCAGGAGTTTTCAGCAGTCTGGGGACCTTTGTTAATTGTTAATGTCGATGATGCAGTGTTTGCATTGGTGGAATATTTTGTGGCTTGTAATTTTTTCATTTGTATGTGGttgtatataataattttgatggatgaatttaaataaaagtgacTTTAGTTTTTACTGGAA

Function

GO: NA

KEGG:

id description
K16757 CCDC77; coiled-coil domain-containing protein 77

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101511 lncRNA upstream 18046 20887155 ~ 20910244 (+) True G75313
TU101513 lncRNA upstream 18046 20903076 ~ 20910244 (+) False G75313
TU101501 lncRNA upstream 54409 20869710 ~ 20873881 (+) True G75309
TU101490 lncRNA upstream 87309 20840533 ~ 20840981 (+) True G75300
TU101332 lncRNA upstream 351045 20576278 ~ 20577245 (+) True G75192
TU101507 lncRNA downstream 3264 20939351 ~ 20941050 (+) True G75310
TU101527 lncRNA downstream 9526 20945613 ~ 20947024 (+) True G75323
TU101557 lncRNA downstream 39880 20975967 ~ 20976313 (+) True G75342
TU101628 lncRNA downstream 110728 21046815 ~ 21047280 (+) True G75381
TU101654 lncRNA downstream 211721 21147808 ~ 21148349 (+) True G75403
XM_007244275.3 mRNA upstream 4614 20917506 ~ 20923676 (+) True LOC103034349
XM_022672312.1 mRNA upstream 4614 20917506 ~ 20923676 (+) False LOC103034349
XM_015604493.2 mRNA upstream 12390 20912781 ~ 20915900 (+) False ccdc34
XM_007244274.3 mRNA upstream 12390 20912807 ~ 20915900 (+) True ccdc34
XM_007244271.3 mRNA upstream 33192 20881830 ~ 20895098 (+) True LOC103033048
XM_022672313.1 mRNA downstream 38703 20974790 ~ 20990577 (+) True LOC103037268
XM_007244289.3 mRNA downstream 55671 20991758 ~ 20998066 (+) True LOC103038014
XM_007244405.3 mRNA downstream 81367 21017454 ~ 21021871 (+) True LOC103046250
XM_022672316.1 mRNA downstream 111809 21047896 ~ 21057840 (+) True thoc5
XM_007244297.3 mRNA downstream 111809 21047896 ~ 21057840 (+) False thoc5
TU101298 other upstream 720368 20203619 ~ 20207922 (+) True LOC103028745
TU101007 other upstream 1395217 19527991 ~ 19533073 (+) False LOC103044129
TU100801 other upstream 1842734 19082816 ~ 19085556 (+) True G74832
TU100573 other upstream 2473093 18454851 ~ 18455197 (+) True G74649
TU99974 other upstream 4639961 16286676 ~ 16288329 (+) True G74169
TU101630 other downstream 87169 21023256 ~ 21025128 (+) True G75383
TU101641 other downstream 152535 21088622 ~ 21096906 (+) True G75391
XR_002650259.1 other downstream 314380 21250467 ~ 21264776 (+) True mov10l1
TU102047 other downstream 1819065 22755152 ~ 22772561 (+) False LOC103028957
TU102309 other downstream 2551443 23487530 ~ 23487870 (+) True G75938

Expression Profile