RNA id: XM_007244289.3


Basic Information

Item Value
RNA id XM_007244289.3
length 4522
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC103038014
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 20991758 ~ 20998066 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTCAAATGGAAAACTCTACGTCATTCCGTCAGTGTACGGCGTTGTCTTGGCGACCcgttatatatttaattttcagtGCAGGGAAACGGACGTCCAGTCAGTAGATTTTTAAGTCTTTTAATCATTATTGGACTTATATAGTTTATTTGTGGTGTGCAGATTATAATGTAGAGTATTATATAGGCAGTAATTCACCTGTTCTTAGCGGATACGTGACTGATATAAAGGCTTTTTGTCCAATCACTGCACTGAGCCGAGGGGAGCGCCAGTTCAGCCGGACTTGTTTAGTTCAGAACGTCATTCGTCAGGGGAGAGCTGGTGGTCGGGGAAATACAACCCAGCTATTTAACCCACAGCGCTGAACAGAGaTGACTCGTCTTGCGGTGGTATGGCTGTGCCTGGCTTTGGTGGCTTCAGCCATGGCAAAACGAGGAGGTGGTGGCTTTAAAGGGGGTTTAAGCTGGGGCAAAGGAGGAAGCTCAAGTAATAAAGGAACCAATACTAAAGGATCATCATCAAGTGGAACACGCTCACAGCCAGCAAATTATCCTCGTCAGCCTCAAGTTCCTAACCAAAATCCACCACCATACCCCGGCACTGGTGGTTCCTCCCCAGGACGAGGGGGTGCTGGAGGATACCCCAATCAAGGGGGATACCCTAATCCTGGACAAGGAGGATACCCAAGGCAGGGAGGATACCCAGCGCAGGGAGGATACCCAGCACAGGGAGGATACCCAGCACAGGGAGGATACCCAGCTCAAGGGGGATACCCAGCTCAGGGAGGTTACCCAGGGCAGGGAAGGTACCCAGCACAGGGAGGATACCCAGCGCAAGGAGGATACCCTGCGCAAGGAGGATACCCAGCTCAGGGAGGTTACCCAGGGCAAGGAAGATACCCAGCACAGGGAGGATACCCAGCACAGGGAGGATACCCAGCGCAAGGAGGATACCCTAACCAGGGAAGGGGTGGAGGGTATCCTTATCCTCAAGGAGGCTCTTACCCTGGCTACCCAGTACGAGGTGCAGCTCAGCCCGGTTCTTATCCCAACCAATATGGTGGTGCAGCAGGTGCAGGAGCATACCCTGGAGCAGCACAGTACCCTTACTGGAACCCCAACAATAAAATTATCAGCCCTCGTTATGGTGGGAACTATGGGCATGGTGGTTATGGATATGCTGGAGCTGGAGGATCTCCTTTTGCCCAGTCTGTTCATAATATGGGAATGGGGCCCTCTATTAAGTCAAAGGGGTTTGGTAGGCAAGCAGTAATGGCCGCTGGAGTTGGTGCAGTGGCAGGCATGGCATTAGGTTATGGCCTGGGCAGTTTCCCACGTCCACGTTTTATGTTTCACAGCCCACAGGAAGAATACTATTATAACCACTACATGTACAGGCGATATGGCACTAGACCAGCTGATGCTAACACAAACCCCAACTCTCCAGGTAGTGAGCCAGGTGATTCTGGATCAAATCCTGCTGGATCAGAAGCAGTTAATCCTTACAATATATTCCAAAATCCTCCACCACAGTCCTATGATAGGTACATGGACACCTGTATGAACAGAACAGACTTGTTGCGAGGGGAGCAGAGTGGCAGAAACAAGAGAGCTGCTGAAGAATCACAGGCTCCGAATCCATCAGACACTGAGCAAGTTCAAGGAGATAATCAAAACAGTCCACAAGAAGACAAGACGTCAGCCAAAGAATCTGAAGAGGTTCAGGTGTCAGATAGCAATGTTCAGAGTAGAGGCACAGAAGTAGAAACCAAGACAAACAACAATACAGAAGTACCTCCACCTTTTGCCGAAAAGCTTACTGGTGCTACGATGTCTCCTCAATCTCAGCAGGACATGGAAGAAGATGATACAGTAAGCATAATGGAGATTGGCTATCCCGCACTGATTGAGCAAATGAAAGCACGTCGCTGTATTGACCTTTACATGGCTTATGCAGAGCACCATGCTGCTCAGCAGCAGACCCAGGAACGTAGCGGTGGTGAGGGTACACCTGCAGGGGGCGGAGAGCAACAAAGACCCCTTAACCATGGGGTCATACTAGTTCTGAGCAGCATCATATCCCTTCTCGTCAGCTCTCTGCTGTTACACTGATCGTAGTAAGACACTATGTTTATAGAACCTACTCTACATCTTCTTTGCAAGTTGATACAATGTTCAGTTAACTTTAGGAAAATAATCAGTTCCCTAAGAGGCAGACAGGCAGTCATTTGAAAAGTTCTAACACTGAGCCATTAGAAGATGTGAATTCCTAGTGTTGTTTATACAAAAATAACTGGGGAATTGGGTTATAAGGCCATTTTTAAGAATATGTTATGCTGTCCACTGCAGTCAATGCTGGACATAATTGCTATGGGATAAATGCATGAGACAAGGCAATCCCAATGCTTTTATATAACAACTTCTGAAACCATTCTGATGGCCACTGTCTAAATGACTACTTTTCAAAGCTGAAGGTGTAACATAGTTACATTTGTCAGCATGACATACACTTTGTAAGATGCTAAATCTTCATCACTGCCATGTCATTATGATCATCACAACCTCACTGCATGAGATTGTATGTGGGCTACTGCACCCCTTATTTAAACCCCTCTGCATGGCATCTTTATTtctgcaaacacaaatatactTGGCAAAGGGATTGAATTGTGTAACTACTGAAAGAGGCATACATTTTCTACAGAATACGTTTTCTTTGTTTGATGAatgtatttagttatttaaactCACAGCGGTAGTGATTTTAGCTGATATTTATAACCCAGgctcatatatttatttatttatttattgttagcACATATCATAGTATactttttcttttgtgttttaagCACATTTGTGTGTTATGACATGAATTCTCCTTGTATTAAGGATACATGGTTGAATCTGGGACTGCTGAGCTATTGTCTTAGTAGGGCATAAAATAGTTCAACCTTatactgtttaatataaaatgtatgtcaAGATTATTctgggggctctgagtggtccagcatgctaggtgctgccactatgatcaggagatcactggtttgaatcctgttcatgtagcttgccatcagctaccggagccttGAGGGAGCAcaactggtcttgctctctctgggtgggtagatgccgCTCTCTCCCCACAAGTAACCATAAAGGGtaatgtcaatcagcacaaggcgtctgtgagctgatgtatcagaaccgagtcgcttggctttcctccgagtgcgctggaggctactcggcaatgcttcattagcagcagttcaaaaagaggcggtggctgacgaCGTGTCAGAGGAGGTATttgctagttttcaccctcctggtgttggtgtattactagtgatggggggagtgctgatgagtgggttgggtaattggccttgtaaattgggggaaaatgggggaaaaaaatttaaatagaatGATTAATAAGATTATACTAAGCTGTATGCAGTAAACAGTATGAATGTACATACATCGATCCGCCATAACATGAATACCACCCCTAATTTCCTTAATATAGTGTAGATCTGGCTCATTCTATTAAAACAGCTCTGTCGAGGTATGGACTCCACAGGACCTCCACAAGGTGTCCTGTGGTATTTGGCACCAAGGCTGTTCATGCCGACCCTTTAACGTCCTCACTAAGAAACAtcattgaaatatttttataaagtgtATATTGTTTACCATTTCATATTTCCATTACCTAACCCTCTGAAACTAATATGCATACCTTCAAAAATAAAGTCCACCCGAACAATTCACAAATGTGGAGGAATTTATCTATGAGTTTTGAAAAGGATAAAAAGAATTATCGAAAGACACAGTGACcccttttttgtatttcttaagCTGTACATGCATCCGCTGATTGGTAGAGATGGCACAGTCAGGTTAAATTAAGTTCAACacttttttggaaaatattgtgaattaaaatgttttctatCAAAAGGTTAGCAGAACATTAAAGGGTTAAGTTCTGTTAGTTGAATCTCTTCAGTAAACTTTGAGTACCCATGACCCTGATGCTGGTTTGCATTGTTATTCCAATGTTATTCACTTCACATGTCAGTGGTTTTATTGTTATGGCAGGTCAGTGTATAAATACTGTGTGAACTCCaggtttgatttatttttgaaagatgtttaattttttttattattcactttattcacactgtttgtttattatttaattttcctgTATGTGCTATAACCTGCTGTTAATGCACTTAGGAATTTTGTGTCATGTGATTTTGAATGGTGTGCTTTGTCTGTGGAAGCATAAAAATTAGCTTACTACTCTTTGATGCCTTGTAACAAATTTGGAATTGTACTGTGTTGCTGTGTTTAAATGTCTGCGATAACTGCAATACTAGCAGTATCAAAAGGTAATGTCCCCTGTAATCAGTGTACAGtacaatttcacctgctgtaaTTGGCACTGTTCCTCTGTCTATGCTAAAGTTTCAATTAAACTTTTGACTAAtctacattca

Function

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process
GO:0048854 brain morphogenesis biological_process
GO:2000310 regulation of NMDA receptor activity biological_process
GO:0021731 trigeminal motor nucleus development biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101557 lncRNA upstream 15445 20975967 ~ 20976313 (+) True G75342
TU101527 lncRNA upstream 44734 20945613 ~ 20947024 (+) True G75323
TU101507 lncRNA upstream 50708 20939351 ~ 20941050 (+) True G75310
TU101511 lncRNA upstream 81514 20887155 ~ 20910244 (+) True G75313
TU101513 lncRNA upstream 81514 20903076 ~ 20910244 (+) False G75313
TU101628 lncRNA downstream 48749 21046815 ~ 21047280 (+) True G75381
TU101654 lncRNA downstream 149742 21147808 ~ 21148349 (+) True G75403
TU101639 lncRNA downstream 192700 21190766 ~ 21195771 (+) False G75390
TU101637 lncRNA downstream 194597 21192663 ~ 21195771 (+) True G75390
TU101656 lncRNA downstream 201221 21199287 ~ 21204023 (+) True G75405
XM_022672313.1 mRNA upstream 1181 20974790 ~ 20990577 (+) True LOC103037268
XM_007244279.3 mRNA upstream 55671 20928290 ~ 20936087 (+) True ccdc77
XM_007244275.3 mRNA upstream 68082 20917506 ~ 20923676 (+) True LOC103034349
XM_022672312.1 mRNA upstream 68082 20917506 ~ 20923676 (+) False LOC103034349
XM_015604493.2 mRNA upstream 75858 20912781 ~ 20915900 (+) False ccdc34
XM_007244405.3 mRNA downstream 19388 21017454 ~ 21021871 (+) True LOC103046250
XM_022672316.1 mRNA downstream 49830 21047896 ~ 21057840 (+) True thoc5
XM_007244297.3 mRNA downstream 49830 21047896 ~ 21057840 (+) False thoc5
XM_022672318.1 mRNA downstream 61366 21059432 ~ 21064841 (+) False chid1
XM_007244298.2 mRNA downstream 61367 21059433 ~ 21064841 (+) True chid1
TU101298 other upstream 783836 20203619 ~ 20207922 (+) True LOC103028745
TU101007 other upstream 1458685 19527991 ~ 19533073 (+) False LOC103044129
TU100801 other upstream 1906202 19082816 ~ 19085556 (+) True G74832
TU100573 other upstream 2536561 18454851 ~ 18455197 (+) True G74649
TU99974 other upstream 4703429 16286676 ~ 16288329 (+) True G74169
TU101630 other downstream 25190 21023256 ~ 21025128 (+) True G75383
TU101641 other downstream 90556 21088622 ~ 21096906 (+) True G75391
XR_002650259.1 other downstream 252401 21250467 ~ 21264776 (+) True mov10l1
TU102047 other downstream 1757086 22755152 ~ 22772561 (+) False LOC103028957
TU102309 other downstream 2489464 23487530 ~ 23487870 (+) True G75938

Expression Profile