RNA id: XM_007244321.3


Basic Information

Item Value
RNA id XM_007244321.3
length 1918
RNA type mRNA
GC content 0.46
exon number 11
gene id irak4
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 21578912 ~ 21591254 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AACACCATCGATATCTCACTTTAAAAGTTACCTACATGGTGACGCTCATAAACCCGAGCAGCCAGTCTGCAGTGCTGTGACTGAGCGGAGGAGCTGGAGATACATTAGAAATGTGTCAGAGATAAAGGACTGCTGAAGCTCTGTCTCCTGAGctgagtgaggagagagagcgagctgGTTTCCGTGTTGAAGAGGTTCAGATGTAGCTAAAGGGGAAATGACTTCAAACTGAGGAAGTGTCTCAATATGGGAAAaacccacactcacacacttaaacacacacacactctgatatCATAAACTCGCTCCTcggtgaatgtgtgtgtggctttaGTCCGCGTATTGTTAAAGAAGCTGGTTTTAATTAGAGGTTGAGGGAGTCCTGAGGTCCAGTATGAGCAGCAGCGCTGTAACAGCTGATACCTTCATCAGGAAGCTCAGTCGCTCCACTCTCAGGACCCTCTCAGACTTCCTGGACCCTCAGGACGCGTGGAGAACTGTTCTGATGGACATACAGAAACCGACAGGAGAACCTAGATACACTCAGCTGCACCTCAGGAGGTTTGAAAGGCTGTTGGCTCAGGGTAAAAGTCCCACAGTAGAGCTGTTGTATGACTGGGGGACCACAAACAGCACAGTTGGAGAACTGGTTGATATTCTTGTCAGAAACAAGCTGTTTGCTCCTGCTAGAGTCCTTCTGCCAGATATAGCTGCAACACCTGCTCCAACACCTGTCACAAATCAGAGGGCAGAGAGAGATCCTCCCATTCAGTACCACCGGGAGGAGACTAAGCTCCTCAGACTCGCAGCAGAAGAAGCACATCACACCCCACCTGACAGCACCACACAACCAGAGGAGAACCAGGAGCCTGATGAAGAAGGATTCTACACTTTTACATATCAAGAGCTGACGGTGATCACAGAAAGCTGGGATGAAAGGCCAGTTTCGGATGGAGGCAGGAGACTCGGGGAGGGAGGCTTTGGAGTTGTGTTCAAAGGCATCCTCAGCACCACACCTGTAGCAGTGAAGAAACTCAATTTAGAAgatgaattagagctgaaagcTCAGTTCAAACAAGAGATTCAGACACTGAAGAGGTTAAAACATGTAAATCTGGTGAATATGGTGGGTTATTCCAGTGACGGCCAGCACCCATGTTTAGTCTATGCTTACATGTCAAATGGTTCATTGCTGGATCGACTAGCATGTGAGGGGGGAAGTGATCCTCTCTTCTGGAAGTTGAGGTGTTCAATAGCATTGGGCACAGCAAGAGGACTGGAATACCTTCACCAACACAACCACATACATCGAGATGTGAAAAGTggcaatattttgttggacGATTCCTTCGTTTCGAAGATTTCAGATTTTGGGTTAACCCGAGCCTCAGCTAAACATTCCTGCACAACAGTAATTACAGAGAGGATTGTGGGTACGACAGCTTACATGGCACCTGAGGCACTGCGAGGAGAGATCACTCCCAAATCAGATGTGTTCAGCTTTGGAGTGGTGCTGCTGGAAATATTATCTGGACTTCCGCCAGTTGATGAAAACCGGGACCCAAAGCTTCTGATAGATATGAAGGATGAAATTGAGGATGAAGAGATCATGCTGCAGGAGTTTGTAGATAAGAAAATGGAAGACTGGGACATGGAGTCTATAGAGAAGATGTACGGGGTGGCAAGTCAGTGCCTAAATGAAAGGAAGAACAGGAGGCCTCTGCTGAAGGAGGTGACTGCTGAGCTGGAGGATCTCTCTCATTGAGACCTGATGAGCTAAACTAAGACAAACATTTGTAAAAATGAATGCTTGAAtagattttaaatgtaaacttttaatactgtaaatatttatgtatattaaaatagcttatatCTGTAGTAAAATTCTGCAACATATTAAAGAATTTTATAGCAA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0007165 signal transduction biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K04733 IRAK4; interleukin-1 receptor-associated kinase 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101816 lncRNA downstream 3257 21566322 ~ 21575655 (-) True G75542
XR_002650260.1 lncRNA downstream 307350 21269504 ~ 21271562 (-) False LOC111193105
TU101713 lncRNA downstream 333382 21245264 ~ 21245530 (-) True G75451
TU101709 lncRNA downstream 391167 21184875 ~ 21187745 (-) True G75447
TU101705 lncRNA downstream 403844 21172622 ~ 21175068 (-) True G75444
TU101828 lncRNA upstream 34815 21626069 ~ 21626282 (-) True G75554
XR_002650261.1 lncRNA upstream 130391 21721645 ~ 21724907 (-) True LOC111193107
TU101861 lncRNA upstream 219286 21810540 ~ 21810761 (-) True G75584
TU101894 lncRNA upstream 350316 21941570 ~ 22001415 (-) True G75611
TU101901 lncRNA upstream 377451 21968705 ~ 21971088 (-) True G75618
XM_007244317.3 mRNA downstream 19420 21475745 ~ 21559492 (-) True tmem117
XM_007244316.3 mRNA downstream 279230 21293359 ~ 21299682 (-) True LOC103045028
XM_007244313.3 mRNA downstream 340718 21236632 ~ 21238194 (-) True pclaf
XM_007244310.3 mRNA downstream 343794 21199250 ~ 21235118 (-) False LOC103043194
XM_015604495.2 mRNA upstream 321270 21912524 ~ 21946943 (-) True LOC103022647
XM_007244331.3 mRNA upstream 459984 22051238 ~ 22145393 (-) True pdzrn4
XM_022672333.1 mRNA upstream 698819 22290073 ~ 22421277 (-) True cntn1
XM_007244332.3 mRNA upstream 698819 22290073 ~ 22380101 (-) False cntn1
XM_022672335.1 mRNA upstream 851482 22442736 ~ 22574013 (-) False LOC103024007
TU101746 other downstream 305895 21270129 ~ 21273017 (-) True LOC111193105
trnat-agu_2 other downstream 682736 20896103 ~ 20896176 (-) True trnat-agu_2
TU101364 other downstream 1478662 20087418 ~ 20100250 (-) False hsd17b12
TU101358 other downstream 1546885 20027162 ~ 20032027 (-) True G75207
TU101215 other downstream 1712930 19859694 ~ 19865982 (-) True G75100
XR_002650263.1 other upstream 865077 22456331 ~ 22513724 (-) False LOC103024007
XR_002650267.1 other upstream 2593315 24184569 ~ 24188202 (-) True LOC111193112
TU102973 other upstream 3323044 24914298 ~ 24920365 (-) True G76377
XR_002650272.1 other upstream 3357790 24949044 ~ 24950022 (-) True LOC107197705
TU103036 other upstream 3592955 25184209 ~ 25184469 (-) True G76424

Expression Profile