RNA id: XM_007244345.2


Basic Information

Item Value
RNA id XM_007244345.2
length 3590
RNA type mRNA
GC content 0.49
exon number 10
gene id LOC103026605
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 22591620 ~ 22627981 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACGTGATCTTTGTTTTCCAGGGCAGCTGTATTTTTGTCCGGAGCGCTGTCAGGTCGACCGACCTCAAAAACACAGATGTGAAGATTTGTgagaatttaaatgatttaaacgCATCGCCGGGTCCGCGGGGCTGCTGCTCACAGACTGAGCTGTGAGATCAGAGACTGTAgatattttaatgtgtgttttaaagccCGGTAAAGGAGTACAAGAGACGCGGCTGTGTTAGCCACATCGCTAACCTAAATGAACGGTGTGTGTTTCAGAGCTGGAGCCTCACCGGTGGAAGAAGTGAGATTACCCGCAGCGGCGGATGATTTAATACATTCTTAGAAACAGTTACTCTGATTTTCTGGCGGTAGTCTGGAGAACACTGGTGAACTTGTGTAGGCTGATGGTGAACCTAGCTACTAACTGAGCCTATCAGTACCCACAATCCAGCTAGCCCAGCTCTCCTCTCCAAGAGACTTCATGGCAAATCTATGCAAATAAGAAAAAGGATGCACCATCCTCCAAGAACCATTGGACCAAATGTTGACCTCAATAAACTAAAGGAAGCATGACTTTCAGATGGGTCCCAGATTCATATGTGCAGTCACTGAACAGGGCTGTGTACTTATGGCACACACAAGGCCAGAGGGTTATGAACATCTCCTTCCATCCGTTGTGTAATCCAACTTACCGACTTTACGCCAAAAGGCCTTTTAGCTACAGAGACAGTCATCATATCTGGAAGCACGTCCACGGCCAAAAGAGTAGAATTCGGAGAGTGTGCCCCTGTAGGGATGGTTCCCGCAGGCACAAGATTTTGCTCTACACCAGCATTTCCAGTTTCAATACCTCAACCTCCCTTGGGTCCACAGACCTGAGCCATCGCATGTTACGACTAAAGAGCACTTTGGAGTCGGTCTCAAAGGTTGTGAGTGGAACACAAGCTGAGATTATCTCTAAGATAGCTCGTCTCAAATCGAGTGCCAGacaggagaagagagagggcGAATCAAGGCCTGAGACGACACCACTTAAAGATCAAAGCACTGGATCTGGAGATTTGGCAGCTTCACCTACACTTGTACCTCATCCTCCATCCGCTACTGTAACCTCACATCCAGACACAACCCCAAGACTACCTACTGAAGCACAGTCAGTCCCACCTCAGCTTGTCCAGGAACAAAGGGaagtgaaaaagaaaagatcTGTGGGCCAAACCTCTAAAGTGAGTGGAGTAGCCACAAGCAAGTCTTCCCAAGCTCAGGCAGGAGACCTTGCAGCTCAACCCGAGAGCCCCACTGCATCCAAATCGACTTCAAATCAACTCTTCCACCCTGGTTCTTTTAGTGTCAACCTAGGCGAAACCTACAACTACCTATCCCATCATATCAATGCTTATTTTCGCAGCTCCACTAAAGCGCAAGAGAATCAAGAGGCCAAAGACGCCACTGATCAGCCATCCTCTTCCATACCTGATCAGTGCCACCAGAACAGTGACCACACACCCACCACTGTGCCTGCAAAGGTCCAGACAACACCTGCACCGCTCCCAGCGCCAAGTCCTACTTCCCCTTCCAAAAAGAGCATTGGCCATTATCTGGGGTACTCTACACCTACAGTCCAGGCCTTTGTAGGGAGCTACATTGCTCCCCTTGTTCCTAGGTTTAGAGCAGAGCCAAAAACTGCACTGCCCGTGGCAGATAACCCTCCTTCCCCTGAGGACCCCACTTCAAAACAGAAGGAAACGCCAGAGATTAAAGAGCAGAAAGCGGCAGATGAAAAGGCACGGAGACTGCTGATTCAAAGAGAGAAGATCATTGCTCGGGTCAGTGTGGATAATCGGACACGAGCACTGGTGCAGGCCTTACACAGAGCATCAGATGTCAGGCTTTATATCAGCAGAGTGGAGGATCTGAGCTACCACCTCCTGGAGTTCCCTGAGACCAGACTAGTGGCTGTAAAGGAGATGGTGATTCCGTGTCTCCTGCGCCTGAGGCAGGCCAGTGATCCGTCTCTAAAGGAAGCGGTCAGAGAGGCCCTTACCCTGGTGGGCTACATTGACCCTGTAAAGAACAGAGGAATACGCATATTATCTATCGATGGAGGGGGCACCAGGGGTCTGGTGGCACTTCAGACTTTACAAAAGCTGGAGGAGCTGTCAGGAAAACCCATTTACCAGCTTTTTGATTACATCTGTGGGGTGAGCACAGGTTCTATTTTAGGTGTCATGCTTGGCGTGCTCAATATCCCtctgagtgagtgtgaggaGCTGTACAAGAAGCTGAGCTCTGATGTCTTTAAGCAGAATGTTATTGTGGGAACAGTGAAAATGGGCTGGAGTCACGCCTTCTATGACAGCGAGGTCTGGGAGAAAGTACTAAAGGAAAAGATGGGATCTGATCTTATGTTTGAAACGTCAAGAAACCCTGATTGTCCAAAGGTGGCAGCAGTGAGCACAGTGGTAAATAAGGGCACTCCATTAAAAGCGTACGTCTTCAGGAACTACAATTTGCCACCTGGAGTGCGCTCCCATTATCGAGGTGGCTGCCAGCACAAGATGTGGGAGGCCATTAGAGCATCCTCAGCCGCTCCGGGGTACTTCCAGGAGTTTGCTCTGGGAACCGACCTCCACCAGgatgGCGGTTTGCTAATAAACAATCCGACTGCTCTGGCGATCCACGAATGCCAGTGTCTGTGGCCAAACACTCGTCTGCAGTGCGTGGTGTCTCTCGGTACAGGGCGCTTTGAGGCTCCCAGCAAGAACGCCGCCACCTACACCAGCCTGAAGACCAAGCTGACCAACGTCATCAGCAGTGCTACAGATACAGAGGagGTGCACACTATGCTGGACGCCCTGCTGCCTCCCCACACGTATTTCCGCTTCAACCCGTACATGAGTGAGGAAGTGGCGCTGGACGAGAGCCGCAGCGAGAAGCTGAACCTGCTGCAGGTGGAGGGAATGCGTTACCTGGAGCGCAATGAGGAGAAGCTGAAGCGAGCCATCAGCACCCTCGCACAGGAGAAGAGCTCAGCTCAGAGGCTGGTCGAGTGGGTCCAGCTCAAAGCGCACATGTACGACGGCCTGACAGGCTTCTCAAAACCGTAGCGGTGCATGGGCGCTGTTTCCACTATCACAGCATATTGTAGCCtgcagtaaaatatttattgataaAGCACGTTCTGATAATGCCTCCTCTAAGGGCTTGCGTTACTGTGTTTGAGGATTATAGCAGCATCCTGGACACAGGCTGAAATTCCCAGCTGAATAAATGACCTCTGAAATGCTGAGGGACTAGCTGTAGGACTAGCTGTAAGAATAGCTGTTCCTTATGGAGCTGATAATGTTTATCAGTCCTCAAACATATGACAGAATCCCCCAGACTGCTAAAACCACACAACAGTACTTTAGTCTTCTTTAAACAAACGCTGTATAGAGTAGATTGGTGTTTTGCTAGAAGAAGTCATGGGAAAATATCTGAAATTGCTTCTAgatttcattatatttatacttatttCACAATAATCACTACAGGGGAAAACGTGTGTGAAGCTGCATTGGAACCAAGAGGAATTGTGATTAAACCGAGACTGTAATATTA

Function

GO: NA

KEGG:

id description
K16815 PNPLA8; calcium-independent phospholipase A2-gamma

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101908 lncRNA downstream 584205 22005429 ~ 22007415 (-) True G75623
TU101909 lncRNA downstream 584205 22006015 ~ 22007415 (-) False G75623
XR_002650262.1 lncRNA downstream 589336 22001490 ~ 22002284 (-) True LOC111193108
TU101894 lncRNA downstream 590205 21941570 ~ 22001415 (-) True G75611
TU102106 lncRNA upstream 111523 22739504 ~ 22739793 (-) True G75771
TU102109 lncRNA upstream 123339 22751320 ~ 22751545 (-) True G75774
TU102113 lncRNA upstream 136944 22764925 ~ 22824298 (-) True G75777
TU102120 lncRNA upstream 146188 22774169 ~ 22780962 (-) True G75780
TU102148 lncRNA upstream 333301 22961282 ~ 22961566 (-) True G75796
XM_022672335.1 mRNA downstream 17607 22442736 ~ 22574013 (-) False LOC103024007
XM_022672340.1 mRNA downstream 77896 22442736 ~ 22513724 (-) False LOC103024007
XM_022672337.1 mRNA downstream 77896 22442736 ~ 22513724 (-) False LOC103024007
XM_022672344.1 mRNA downstream 77896 22442736 ~ 22513724 (-) False LOC103024007
XM_022672341.1 mRNA downstream 77896 22442736 ~ 22513724 (-) False LOC103024007
XM_022672351.1 mRNA upstream 2206 22630187 ~ 22637125 (-) False LOC103026897
XM_007244346.3 mRNA upstream 2206 22630187 ~ 22633443 (-) True LOC103026897
XM_007244348.3 mRNA upstream 38842 22666823 ~ 22687468 (-) True LOC103027474
XM_022672350.1 mRNA upstream 39177 22667158 ~ 22687469 (-) False LOC103027474
XM_007244349.3 mRNA upstream 67428 22695409 ~ 22702841 (-) True LOC103027797
XR_002650263.1 other downstream 77896 22456331 ~ 22513724 (-) False LOC103024007
TU101746 other downstream 1318603 21270129 ~ 21273017 (-) True LOC111193105
trnat-agu_2 other downstream 1695444 20896103 ~ 20896176 (-) True trnat-agu_2
TU101364 other downstream 2491370 20087418 ~ 20100250 (-) False hsd17b12
TU101358 other downstream 2559593 20027162 ~ 20032027 (-) True G75207
XR_002650267.1 other upstream 1556588 24184569 ~ 24188202 (-) True LOC111193112
TU102973 other upstream 2286317 24914298 ~ 24920365 (-) True G76377
XR_002650272.1 other upstream 2321063 24949044 ~ 24950022 (-) True LOC107197705
TU103036 other upstream 2556228 25184209 ~ 25184469 (-) True G76424
XR_002650273.1 other upstream 2660869 25288850 ~ 25301768 (-) False rab3il1

Expression Profile