RNA id: XM_007244349.3


Basic Information

Item Value
RNA id XM_007244349.3
length 1897
RNA type mRNA
GC content 0.42
exon number 6
gene id LOC103027797
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 22695409 ~ 22702841 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AATGTATTGAAAAcataatgtttgtgtttgtgtaccaCAGTATTAGTCCTCAAAGAGTAGTTAACAGTGTTTGGATCTGGTCCCATTGCTCTTCCATTCAATAGAATGAGATGAGGCAGCTCTAACAGATCGATGACCCGTGCTGGGACAGCTCAGTCATGGCGGGGTGGAGCGTGTTAATGTGGCTGAGCTTAAACCTAGTCAGACAATTTGTATTTGACCTGAGAAGAGTGTGCCTGCACGTTCCTGTGAGAAGGAAGGGAAAGAGCCAGAGAGAACCATGAAGCAGCACTGTGCTCTGAAACATGGCATTTTTAAAGAGTTCTTGGCGGAATTTCTTGGAACGTTCGTGTTGGTGTTATTTGGCTGTGGATCGGTTGCTCAGACAGTCCTGAGCAGGAATACACTGGGGGAGCCTCTCACTATTCACCTTGGTTTCACTACCGGCCTCATGATGGGTGTCTACGTGGCTGGTGGagtttcagGAGGTCATTTGAACCCAGCCGTGTCACTGGCCATGGTCATACTGGGAAAACTGAAGATCTGGAAGTTCCCTATTTATGTTATCGCTCAGTTCCTGGGTGCCtttgctggagctgctggagtttttgggCTGTATTATGATGCCTTCATGGATTTTACCAGTGGGATACTGTCAGTGACTGGCATCAATGCTACAGGTCACATTTTTGCCTCCTATCCTGGAAGACATCTTACTGTACTTGGAGGATTCATTGACCAGGTGTTTGGAACAGGAATGCTGGTGCTGTGCATCCTGGCCATAACCGATGGCAAGAATATAGGAGCCCCTAAAGGTGTGGAGCCTCTAGCCATTGGTCTCATCATCCTGGGCATTAGTGTCTCAATGGGGATGAACTGTGGATACCCACTGAACCCTGCCAGGGATTTGGGGCCTAGACTCTTTACCGCTGTGGCTGGCTGGGGCATGGAGGTGTTCAGCACTGCAGATTACTGGTGGTGGATCCCAGTGGCCGGACCATTGATAGGGGGAATCACAGGAGCTGTTGTCTACTTTCTCCTGATAGAGCTCCATCACTCTGACCACTCAGAGAAAGCCCACGAGGAgcctgaggaagaggaggaagacgatgaagaggaagaggacAGCAGCCTGAAGGACAAATATGAAATGATCACCATGAGCtaaaaagatagaaaattaCTTTGGACTGATAAAAAGTATAAAGAGCATTTTGCATTATTGTGCATAGGAAACAGGCCGTCAGTATGGGTTTCGCGCCACTTGCTTCAActgtctttcgctctctctctctcagacattTGTTTGTTGTCAGGAAATAAACTATGACAGGGATTACAATTAAGTAGCCTGTTATTAAATAGATCATGAATTTTTCCTGGgcagaaaacatgaaacaaatCCCCTTTTGGCGTTACATTTATGAGCTTGGCTGGAGCAAagcatcatgaaaaaaaaacaaaatcttccTTATGCCTGGATTGTGCTCTTCCATTTGAAAAAATTCAACAAGTATGCAAGGCTACAATGTATAAATCCTACAAAGATAATGTGCCAACAGAGCAATATTTTAGTGGGAAACTTAGGctgtttacttattattaataCAATGTTGTGTATTTGACCTTAATGTgatgtttttatgtattgtatttttaatagagCACTTTGTAGAATAATTcttgttttaaaaagttaatacaTAAGtgtttataacaaaaaaagaaaagaatattgAGGATATTTAATAATGGTTTAGGATGTGTCGCAGTGACAAGAGGTAAAGGCTCATTACAGtttgtatttctgtttatatagAGAATACATACTTTTGTAATGAAGCTTCtcctgtttaaatatttatgtaattttactgaaataaacatcAGAACTTTT

Function

GO:

id name namespace
GO:0015793 glycerol transport biological_process
GO:0034219 carbohydrate transmembrane transport biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0071918 urea transmembrane transport biological_process
GO:0015698 inorganic anion transport biological_process
GO:0006833 water transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015168 glycerol transmembrane transporter activity molecular_function
GO:0015204 urea transmembrane transporter activity molecular_function
GO:0015105 arsenite transmembrane transporter activity molecular_function
GO:0005372 water transmembrane transporter activity molecular_function

KEGG:

id description
K02440 GLPF; glycerol uptake facilitator protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102008 lncRNA downstream 78382 22585926 ~ 22617027 (-) True G75686
TU101908 lncRNA downstream 687994 22005429 ~ 22007415 (-) True G75623
TU101909 lncRNA downstream 687994 22006015 ~ 22007415 (-) False G75623
XR_002650262.1 lncRNA downstream 693125 22001490 ~ 22002284 (-) True LOC111193108
TU101901 lncRNA downstream 724321 21968705 ~ 21971088 (-) True G75618
TU102106 lncRNA upstream 36663 22739504 ~ 22739793 (-) True G75771
TU102109 lncRNA upstream 48479 22751320 ~ 22751545 (-) True G75774
TU102113 lncRNA upstream 62084 22764925 ~ 22824298 (-) True G75777
TU102120 lncRNA upstream 71328 22774169 ~ 22780962 (-) True G75780
TU102148 lncRNA upstream 258441 22961282 ~ 22961566 (-) True G75796
XM_022672350.1 mRNA downstream 7940 22667158 ~ 22687469 (-) False LOC103027474
XM_007244348.3 mRNA downstream 7941 22666823 ~ 22687468 (-) True LOC103027474
XM_022672351.1 mRNA downstream 58284 22630187 ~ 22637125 (-) False LOC103026897
XM_007244346.3 mRNA downstream 61966 22630187 ~ 22633443 (-) True LOC103026897
XM_007244345.2 mRNA downstream 67428 22591620 ~ 22627981 (-) True LOC103026605
XM_015604574.2 mRNA upstream 69 22702910 ~ 22719280 (-) False LOC103028124
XM_007244350.3 mRNA upstream 69 22702910 ~ 22719279 (-) True LOC103028124
XM_007244352.3 mRNA upstream 17671 22720512 ~ 22734099 (-) False LOC103028433
XM_007244351.3 mRNA upstream 17671 22720512 ~ 22734099 (-) True LOC103028433
XM_022672353.1 mRNA upstream 121732 22824573 ~ 22830793 (-) True LOC103030430
XR_002650263.1 other downstream 181685 22456331 ~ 22513724 (-) False LOC103024007
TU101746 other downstream 1422392 21270129 ~ 21273017 (-) True LOC111193105
trnat-agu_2 other downstream 1799233 20896103 ~ 20896176 (-) True trnat-agu_2
TU101364 other downstream 2595159 20087418 ~ 20100250 (-) False hsd17b12
TU101358 other downstream 2663382 20027162 ~ 20032027 (-) True G75207
XR_002650267.1 other upstream 1481728 24184569 ~ 24188202 (-) True LOC111193112
TU102973 other upstream 2211457 24914298 ~ 24920365 (-) True G76377
XR_002650272.1 other upstream 2246203 24949044 ~ 24950022 (-) True LOC107197705
TU103036 other upstream 2481368 25184209 ~ 25184469 (-) True G76424
XR_002650273.1 other upstream 2586009 25288850 ~ 25301768 (-) False rab3il1

Expression Profile